View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18624_low_2 (Length: 547)
Name: NF18624_low_2
Description: NF18624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18624_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 509; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 1 - 513
Target Start/End: Complemental strand, 40063315 - 40062803
Alignment:
| Q |
1 |
gcaacacttacaatgtctgtgatggttttccacaattcatgtgacatttggtttgagtaaaaggtcctctgtagttgcatgagtctgtgcaatcggcatt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40063315 |
gcaacacttacaatgtctgtgatggttttccacaattcatgtgacatttggtttgagtaaaaggtcctctgtagttgcatgagtctgtgcaatcggcatt |
40063216 |
T |
|
| Q |
101 |
tgaagcaacatatgtaggccagtatcgcccaatgctttgtccatttacccaagcctcgccttttcccatccccgtgaagtcaatcgcaactggattactg |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
40063215 |
tgaagcaacatatgtaggccagtatcgcccaatgctttgtccatttacccaagcctcaccttttcccatccccgtgaagtcaatcgcaactggattactg |
40063116 |
T |
|
| Q |
201 |
ccggatggagcatcaaagtttgtctaatgcaacatgtatgacattggttagtaccaaaaaacatttttcatatagtggcattcttttaatttgaaattcc |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40063115 |
ccggatggagcatcaaagtttgtctaatgcaacatgtatgacattggttagtaccaaaaaacatttttcatatagtggcattcttttaatttgaaattcc |
40063016 |
T |
|
| Q |
301 |
ataacttatataaagggaaacaataaattgaaaataaaattaccttgtaccaaatcaatggttgattcttagggaaagtagactgtgagttccaaccttc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40063015 |
ataacttatataaagggaaacaataaattgaaaataaaattaccttgtaccaaatcaatggttgattcttagggaaagtagactgtgagttccaaccttc |
40062916 |
T |
|
| Q |
401 |
ggaacttccactggacagacctaaatcttcaccttttaggccaacctgtatcaatagaattaactccattaacaatcaatctccattaagactaataaat |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40062915 |
ggaacttccactggacagacctaaatcttcaccttttaggccaacctgtatcaatagaattaactccattaacaatcaatctccattaagactaataaat |
40062816 |
T |
|
| Q |
501 |
agtctttgatcaa |
513 |
Q |
| |
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||||||||||||| |
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| T |
40062815 |
agtctttgatcaa |
40062803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 532
Target Start/End: Complemental strand, 40093946 - 40093424
Alignment:
| Q |
1 |
gcaacacttacaatgtctgtgatggttttccacaattcatgtgacatttggtttgagtaaaaggtcctctgtagttgcatgagtctgtgcaatcggcatt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40093946 |
gcaacacttacaatgtctgtgatggttttccacaattcatgtgacatttggtttgagtaaaaggtcctctgtagttgcatgagtctgtgcaatcgacatt |
40093847 |
T |
|
| Q |
101 |
tgaagcaacatatgtaggccagtatcgcccaatgctttgtccatttacccaagcctcgccttttcccatccccgtgaagtcaatcgcaactggattactg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
40093846 |
tgaagcaacatatgtaggccagtatcgcccaatgctttgtccatttacccaagcctcgccttttcccatccctgtgaagtcaatcacaactggattactg |
40093747 |
T |
|
| Q |
201 |
ccggatggagcatcaaagtttgtctaatgcaacatgtatgacattggttagtaccaaaaaacatttttcatatagtggcattcttttaatttgaaattcc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
40093746 |
ccggatggagcatcaaagtttgtctaatgcaacatgcatgacattggttagtagcaaaaaacatttttcatatagtggcgttcttttaatttgaaattcc |
40093647 |
T |
|
| Q |
301 |
ataacttatataaagggaaacaataaattgaaaataaaattaccttgtaccaaatcaatggttgattcttagggaaagtagactgtgagttccaaccttc |
400 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| || ||| ||||| || | |
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| T |
40093646 |
ataacttatatcaagggaaacaataaattgaaaattaaattaccttgtaccaaatcaatggttgtttcttagggaaagtagtctttgaattccacgctcc |
40093547 |
T |
|
| Q |
401 |
ggaacttccactggacagacctaaatcttcaccttttaggccaacctgtatcaatagaattaactccattaacaatcaatctccattaagactaataaat |
500 |
Q |
| |
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|||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||| |||| |
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| T |
40093546 |
ggaacttccactagagagacctaaatcttcaccttttaggccaacctgtatcaaaagaattaactccattaactat---------gtaagactaacaaat |
40093456 |
T |
|
| Q |
501 |
agtctttgatcaaaagttaagactgacctgat |
532 |
Q |
| |
|
|||||| |||||||||| |||||||||||||| |
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| T |
40093455 |
agtcttcgatcaaaagtgaagactgacctgat |
40093424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Complemental strand, 40081666 - 40081190
Alignment:
| Q |
1 |
gcaacacttacaatgtctgtgatggttttccacaattcatgtgacatttggtttgagtaaaaggtcctctgtagttgcatgagtctgtgcaatcggcatt |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||| || ||||||| | | |||| |||||||||| ||||||||||||||||||||| ||||||| |
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|
| T |
40081666 |
gcaacacttacaatgtctgtgacggttttccacagttcttgcgacatttagatgaagtataaggtcctctatagttgcatgagtctgtgcaaccggcatt |
40081567 |
T |
|
| Q |
101 |
tgaagcaacatatgtaggccagtatcgcccaatgctttgtccatttacccaagcctcgccttttcccatccccgtgaagtcaatcgcaactggattactg |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
40081566 |
tgaagcgacatatgtaggccagtatcgcccaatgctttgtccatttacccaagcctcaccttttcccatccccgtgaagtcaatcgcaactggattactg |
40081467 |
T |
|
| Q |
201 |
ccggatggagcatcaaagtttgtctaatgcaacatgtatgacattggttagta-ccaaaaaacatttttcatatagtggcattcttttaatttgaaattc |
299 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| ||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
40081466 |
ccggatggagcatcaaagtttgtctagtgcaacatgtattacattggttagtagcaaaaaaacatttttcatatagtggcatttccttaatttgaaattc |
40081367 |
T |
|
| Q |
300 |
cataacttatataaagggaaacaataaattgaaaataaaattaccttgtaccaaatcaatggttgattcttagggaaagtagactgtgagttccaacctt |
399 |
Q |
| |
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| | |||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||| ||||||||||||| ||||| ||| |
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| T |
40081366 |
ccttacttatatcaagggaaacaataaattgaaaataaaactaccttgtaccaaaccaatggttggttcttagggtaagtagactgtgaattccaccctc |
40081267 |
T |
|
| Q |
400 |
cggaacttccactggacagacctaaatcttcaccttttaggccaacctgtatcaatagaattaactccattaacaat |
476 |
Q |
| |
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| ||||||||||| ||||||||||||||||| ||||||||||||| ||||||| | | ||||||||||||||||||| |
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| T |
40081266 |
cagaacttccactagacagacctaaatcttcgccttttaggccaatctgtatcgaaaaaattaactccattaacaat |
40081190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 7e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 8 - 226
Target Start/End: Original strand, 22012538 - 22012756
Alignment:
| Q |
8 |
ttacaatgtctgtgatggttttccacaattcatgtgacatttggtttgagtaaaaggtcctctgtagttgcatgagtctgtgcaatcggcatttgaagca |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||| || | ||||||| | || | | | |||||| || ||||||||||| || || | | ||| | || |
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| T |
22012538 |
ttacaatgtctgtgatggttttccacaattcttgaggcatttggatgcagaatatgttcctctataattgcatgagtcagtacagccagaattcggagag |
22012637 |
T |
|
| Q |
108 |
acatatgtaggccagtatcgcccaatgctttgtccatttacccaagcctcgccttttcccatccccgtgaagtcaatcgcaactggattactgccggatg |
207 |
Q |
| |
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| ||||| |||||||||||||||||||| ||||| || |||||||| |||||||||||||||||||||||||| || ||||| || ||||| ||||| | |
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| T |
22012638 |
atgtatgttggccagtatcgcccaatgctctgtccgttcacccaagcttcgccttttcccatccccgtgaagtcgattgcaaccgggttacttccggagg |
22012737 |
T |
|
| Q |
208 |
gagcatcaaagtttgtcta |
226 |
Q |
| |
|
||||| ||||||| ||||| |
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|
| T |
22012738 |
gagcaacaaagttcgtcta |
22012756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 44356174 - 44356214
Alignment:
| Q |
129 |
ccaatgctttgtccatttacccaagcctcgccttttcccat |
169 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||| |||| |
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|
| T |
44356174 |
ccaatgctttgtccatttacccaagcttcaccttttgccat |
44356214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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