View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18624_low_22 (Length: 238)

Name: NF18624_low_22
Description: NF18624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18624_low_22
NF18624_low_22
[»] chr2 (12 HSPs)
chr2 (1-227)||(7160718-7160944)
chr2 (138-208)||(7156175-7156245)
chr2 (138-208)||(7168673-7168743)
chr2 (130-208)||(7174356-7174434)
chr2 (149-208)||(6538843-6538902)
chr2 (140-207)||(11237693-11237760)
chr2 (140-208)||(7199961-7200029)
chr2 (140-208)||(33026657-33026725)
chr2 (141-215)||(33020314-33020388)
chr2 (130-215)||(13924638-13924723)
chr2 (140-192)||(36577366-36577418)
chr2 (1-35)||(7200131-7200165)
[»] chr3 (31 HSPs)
chr3 (140-193)||(2442039-2442092)
chr3 (140-215)||(4142110-4142185)
chr3 (140-193)||(4157942-4157995)
chr3 (140-209)||(2456249-2456318)
chr3 (140-192)||(3754600-3754652)
chr3 (140-216)||(9561960-9562036)
chr3 (141-208)||(2631358-2631425)
chr3 (140-191)||(2644362-2644413)
chr3 (140-191)||(2659152-2659203)
chr3 (140-215)||(7324407-7324482)
chr3 (140-215)||(7942485-7942560)
chr3 (141-215)||(2492083-2492157)
chr3 (141-215)||(9594600-9594674)
chr3 (142-212)||(23197014-23197084)
chr3 (141-202)||(768318-768379)
chr3 (140-209)||(771481-771550)
chr3 (140-193)||(2696730-2696783)
chr3 (140-189)||(9608346-9608395)
chr3 (140-189)||(13498224-13498273)
chr3 (140-191)||(754609-754660)
chr3 (140-191)||(1891064-1891115)
chr3 (140-215)||(2476634-2476709)
chr3 (140-187)||(2502148-2502195)
chr3 (142-192)||(2459277-2459327)
chr3 (140-193)||(803216-803269)
chr3 (140-193)||(989396-989449)
chr3 (140-193)||(1007461-1007514)
chr3 (140-193)||(1022489-1022542)
chr3 (140-193)||(7432052-7432105)
chr3 (140-193)||(12133097-12133150)
chr3 (140-216)||(9565804-9565880)
[»] chr5 (7 HSPs)
chr5 (140-192)||(11081813-11081865)
chr5 (140-193)||(23766860-23766913)
chr5 (140-193)||(23816708-23816761)
chr5 (140-195)||(3181717-3181772)
chr5 (140-189)||(20292995-20293044)
chr5 (140-193)||(23769644-23769697)
chr5 (140-193)||(23819492-23819545)
[»] chr7 (6 HSPs)
chr7 (138-201)||(24723352-24723415)
chr7 (1-42)||(24723215-24723256)
chr7 (140-193)||(1078158-1078211)
chr7 (144-193)||(3927063-3927112)
chr7 (140-190)||(1421170-1421220)
chr7 (140-216)||(39298977-39299053)
[»] chr6 (11 HSPs)
chr6 (144-201)||(7564741-7564798)
chr6 (143-193)||(370783-370833)
chr6 (144-193)||(176338-176387)
chr6 (150-193)||(1442106-1442149)
chr6 (142-213)||(19119065-19119136)
chr6 (142-213)||(19126359-19126430)
chr6 (139-189)||(9703888-9703938)
chr6 (140-202)||(17368366-17368428)
chr6 (141-191)||(24417486-24417536)
chr6 (144-189)||(9819831-9819876)
chr6 (144-192)||(1470922-1470970)
[»] chr1 (4 HSPs)
chr1 (133-189)||(24629213-24629269)
chr1 (140-181)||(23896147-23896188)
chr1 (144-208)||(51381438-51381502)
chr1 (140-204)||(51858606-51858670)
[»] scaffold0044 (1 HSPs)
scaffold0044 (144-215)||(89147-89218)
[»] scaffold0015 (2 HSPs)
scaffold0015 (140-190)||(32330-32380)
scaffold0015 (132-190)||(40382-40440)
[»] chr4 (3 HSPs)
chr4 (146-192)||(55419788-55419834)
chr4 (132-190)||(11032902-11032960)
chr4 (143-193)||(22672125-22672175)


Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 7160944 - 7160718
Alignment:
Q  1 tgtttctcttgatttggagaaggagtcttatcgagagctattgccaccgcctgatcatagagtgataaccgtggttaattttatgctaggagtgttaagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7160944 tgtttctcttgatttggagaaggagtcttatcgagagctattgccaccgcctgatcatagagtgataaccgtggttaattttatgctaggagtgttaagg 7160845  T
Q  101 gattgcttgtgcctattttctaatgatcctacttttacagatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  7160844 gattgcttgtgcctattttctaatgatcctacttttacagatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtcttc 7160745  T
Q  201 ctcacatgaaagatcatcctcgttctt 227  Q
    |||||||||||||||||||||||||||    
T  7160744 ctcacatgaaagatcatcctcgttctt 7160718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 7156245 - 7156175
Alignment:
Q  138 cagatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatg 208  Q
    |||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||| |||||    
T  7156245 cagatgtttggcttatgaaggagtatggaaatgaagattcttgggctaaattgttccgtgttccttacatg 7156175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 7168743 - 7168673
Alignment:
Q  138 cagatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatg 208  Q
    |||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| |||||    
T  7168743 cagacgtttggcttatgaaggaatatggaaataacgattcttggactaaattgttccgagttccttacatg 7168673  T

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Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 130 - 208
Target Start/End: Complemental strand, 7174434 - 7174356
Alignment:
Q  130 tacttttacagatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatg 208  Q
    ||||||| ||||||| |||||||||||||| ||||||||| | ||||||||||||| |||||||||||||||| |||||    
T  7174434 tactttttcagatgtctggcttatgaaggaatatggaaatcaagattcttggactagattgttccgtgttccttacatg 7174356  T

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Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 208
Target Start/End: Original strand, 6538843 - 6538902
Alignment:
Q  149 cttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatg 208  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||| || |||||    
T  6538843 cttatgaaggagtatggaaataaagattcttggactaaattgttcagtgtttctaacatg 6538902  T

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Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 140 - 207
Target Start/End: Original strand, 11237693 - 11237760
Alignment:
Q  140 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacat 207  Q
    ||||||||||||||| |||||||||||||||  ||  |||||||||||||||||||||||||| ||||    
T  11237693 gatgtttggcttatggaggagtatggaaatagagaaacttggactaaattgttccgtgttccttacat 11237760  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 208
Target Start/End: Complemental strand, 7200029 - 7199961
Alignment:
Q  140 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatg 208  Q
    ||||||||| |||||||||||| ||||||| |  |||||||| ||| |||||||||||||||| |||||    
T  7200029 gatgtttgggttatgaaggagtttggaaatgaaaattcttgggctagattgttccgtgttccttacatg 7199961  T

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Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 208
Target Start/End: Original strand, 33026657 - 33026725
Alignment:
Q  140 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatg 208  Q
    ||||||||| |||||||| | |||||||||||  | |||||||||| ||||| ||||||||||||||||    
T  33026657 gatgtttgggttatgaagcaatatggaaataaaaagtcttggactagattgtaccgtgttcctcacatg 33026725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 141 - 215
Target Start/End: Original strand, 33020314 - 33020388
Alignment:
Q  141 atgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaagatc 215  Q
    |||| ||| |||||||||| |||||||||||  | |||||||||| ||||| |||||||||| ||||| ||||||    
T  33020314 atgtgtggattatgaaggaatatggaaataaaaagtcttggactagattgtaccgtgttccttacatggaagatc 33020388  T

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Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 215
Target Start/End: Complemental strand, 13924723 - 13924638
Alignment:
Q  130 tacttttacagatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaagatc 215  Q
    ||||||| | |||||||||||| ||||||||| ||||||| |||| |  |||| ||||||||||||| |||||  |||| ||||||    
T  13924723 tactttttcggatgtttggcttttgaaggagtttggaaatgatgaattctggattaaattgttccgtcttcctagcatggaagatc 13924638  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 36577366 - 36577418
Alignment:
Q  140 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgtt 192  Q
    ||||||||| |||||||||| ||||||||||| || ||||||| |||||||||    
T  36577366 gatgtttggattatgaaggaatatggaaataaagagtcttggattaaattgtt 36577418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 7200165 - 7200131
Alignment:
Q  1 tgtttctcttgatttggagaaggagtcttatcgag 35  Q
    ||||||||||||||||||||| |||||||||||||    
T  7200165 tgtttctcttgatttggagaatgagtcttatcgag 7200131  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 2442039 - 2442092
Alignment:
Q  140 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 193  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  2442039 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttc 2442092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 140 - 215
Target Start/End: Complemental strand, 4142185 - 4142110
Alignment:
Q  140 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaagatc 215  Q
    |||||||||||||||||||| ||||||||||| || ||||||||||||||||||  | ||||| |||||| |||||    
T  4142185 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatgagagatc 4142110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 4157995 - 4157942
Alignment:
Q  140 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 193  Q
    |||||||||||||||||||| ||||||||||| || ||||||||||||||||||    
T  4157995 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttc 4157942  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 209
Target Start/End: Original strand, 2456249 - 2456318
Alignment:
Q  140 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatga 209  Q
    ||||||||| |||||||||| ||||||||||| || |||||||||||||||| || | ||||| ||||||    
T  2456249 gatgtttgggttatgaaggaatatggaaataaagactcttggactaaattgtaccatattccttacatga 2456318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 3754600 - 3754652
Alignment:
Q  140 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgtt 192  Q
    ||||||||| |||||||||| ||||||||||| || |||||||||||||||||    
T  3754600 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaattgtt 3754652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 216
Target Start/End: Complemental strand, 9562036 - 9561960
Alignment:
Q  140 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaagatca 216  Q
    ||||||||| ||||||| |||||||||||| | || |||||||||||||| | | |||||||| ||||| |||||||    
T  9562036 gatgtttggattatgaatgagtatggaaatcaagagtcttggactaaattatacagtgttcctaacatgcaagatca 9561960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 208
Target Start/End: Original strand, 2631358 - 2631425
Alignment:
Q  141 atgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatg 208  Q
    |||||||| |||||||||| ||||||||| | || |||||||||||||||| | |||||||| |||||    
T  2631358 atgtttggattatgaaggaatatggaaatcaagagtcttggactaaattgtgcagtgttcctgacatg 2631425  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 191
Target Start/End: Complemental strand, 2644413 - 2644362
Alignment:
Q  140 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgt 191  Q
    ||||||||| |||||||||||||||||||| | || ||||||||||||||||    
T  2644413 gatgtttggattatgaaggagtatggaaatcaagagtcttggactaaattgt 2644362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 191
Target Start/End: Complemental strand, 2659203 - 2659152
Alignment:
Q  140 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgt 191  Q
    ||||||||| |||||||||||||||||||| | || ||||||||||||||||    
T  2659203 gatgtttggattatgaaggagtatggaaatcaagagtcttggactaaattgt 2659152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 215
Target Start/End: Complemental strand, 7324482 - 7324407
Alignment:
Q  140 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaagatc 215  Q
    ||||||||| |||||||||| || |||||||| || ||||||||||||||||   |||||||| ||||| ||||||    
T  7324482 gatgtttggattatgaaggactacggaaataaagagtcttggactaaattgtatagtgttcctaacatgcaagatc 7324407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 215
Target Start/End: Original strand, 7942485 - 7942560
Alignment:
Q  140 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaagatc 215  Q
    ||||||||| |||||||||||||||| ||||| || ||||||| |||||||| |  ||||||| ||||| ||||||    
T  7942485 gatgtttggattatgaaggagtatggtaataaagagtcttggattaaattgtacaatgttccttacatggaagatc 7942560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 141 - 215
Target Start/End: Original strand, 2492083 - 2492157
Alignment:
Q  141 atgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaagatc 215  Q
    |||||||| ||||||||||||||||||||   || ||||||||||||||||   |||||||| ||||| ||||||    
T  2492083 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgtatagtgttcctaacatgcaagatc 2492157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 9594674 - 9594600
Alignment:
Q  141 atgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaagatc 215  Q
    |||||||| |||||||  |||| |||||| | || ||||||||||||||||||| ||||||| ||||| ||||||    
T  9594674 atgtttggattatgaataagtacggaaatgaagagtcttggactaaattgttccatgttcctaacatgcaagatc 9594600  T

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Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 23197014 - 23197084
Alignment:
Q  142 tgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaag 212  Q
    ||||||||| |||||||| ||||||||| | || ||||||||||||||||| ||| ||||| |||| ||||    
T  23197014 tgtttggctgatgaaggaatatggaaatgaagaatcttggactaaattgtttcgtattccttacataaaag 23197084  T

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Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 202
Target Start/End: Complemental strand, 768379 - 768318
Alignment:
Q  141 atgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcct 202  Q
    |||||||| ||||||| ||||| |||||| | || ||||||||||||||||||| |||||||    
T  768379 atgtttggattatgaatgagtacggaaatgaagagtcttggactaaattgttccatgttcct 768318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 209
Target Start/End: Complemental strand, 771550 - 771481
Alignment:
Q  140 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatga 209  Q
    ||||||||| |||||||||| ||||||||||  || |||||||||||||||| ||  |||||| ||||||    
T  771550 gatgtttgggttatgaaggaatatggaaatacagactcttggactaaattgtaccacgttccttacatga 771481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 2696783 - 2696730
Alignment:
Q  140 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 193  Q
    ||||||||| |||||||||| ||||||||||| || ||||||| ||||||||||    
T  2696783 gatgtttggattatgaaggaatatggaaataaagagtcttggattaaattgttc 2696730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 189
Target Start/End: Complemental strand, 9608395 - 9608346
Alignment:
Q  140 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaatt 189  Q
    ||||||||| |||||||||| ||||||||||  |||||||||||||||||    
T  9608395 gatgtttgggttatgaaggaatatggaaatatagattcttggactaaatt 9608346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 189
Target Start/End: Original strand, 13498224 - 13498273
Alignment:
Q  140 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaatt 189  Q
    ||||||||| |||||||||| ||||||||||| || ||||||||||||||    
T  13498224 gatgtttggattatgaaggaatatggaaataaagagtcttggactaaatt 13498273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 191
Target Start/End: Complemental strand, 754660 - 754609
Alignment:
Q  140 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgt 191  Q
    ||||||||| ||||||||||||||||| || | || ||||||||||||||||    
T  754660 gatgtttggattatgaaggagtatggagatcaagagtcttggactaaattgt 754609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 191
Target Start/End: Complemental strand, 1891115 - 1891064
Alignment:
Q  140 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgt 191  Q
    ||||||||| ||||||||||  |||||||||| || ||||||||||||||||    
T  1891115 gatgtttggattatgaaggaacatggaaataaagactcttggactaaattgt 1891064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 215
Target Start/End: Original strand, 2476634 - 2476709
Alignment:
Q  140 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaagatc 215  Q
    ||||||||| |||||||  | ||||||||||| || |||||||||||||||| |  ||||||| ||||| ||||||    
T  2476634 gatgtttggattatgaaacactatggaaataaagagtcttggactaaattgtacactgttcctaacatgcaagatc 2476709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 187
Target Start/End: Original strand, 2502148 - 2502195
Alignment:
Q  140 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaa 187  Q
    ||||||||| |||||||||||||||||||||| || | ||||||||||    
T  2502148 gatgtttggattatgaaggagtatggaaataaggagttttggactaaa 2502195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 2459277 - 2459327
Alignment:
Q  142 tgtttggcttatgaaggagtatggaaataatgattcttggactaaattgtt 192  Q
    ||||||| |||||||||| ||||||||||| || |||||||| ||||||||    
T  2459277 tgtttggattatgaaggaatatggaaataaagagtcttggacaaaattgtt 2459327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 803269 - 803216
Alignment:
Q  140 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 193  Q
    ||||||||| ||||||| || ||||||||||| || ||||||||||| ||||||    
T  803269 gatgtttgggttatgaaagaatatggaaataaagagtcttggactaagttgttc 803216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 989396 - 989449
Alignment:
Q  140 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 193  Q
    ||||||||| | ||||| ||||| |||||||| || ||||||||||||||||||    
T  989396 gatgtttgggtaatgaaagagtacggaaataaagagtcttggactaaattgttc 989449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 1007461 - 1007514
Alignment:
Q  140 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 193  Q
    ||||||||| | |||||||| ||||||||||| || || |||||||||||||||    
T  1007461 gatgtttgggtaatgaaggaatatggaaataacgagtcctggactaaattgttc 1007514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 1022489 - 1022542
Alignment:
Q  140 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 193  Q
    ||||||||| | |||||||| ||||||||||| || || |||||||||||||||    
T  1022489 gatgtttgggtaatgaaggaatatggaaataacgagtcatggactaaattgttc 1022542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 7432105 - 7432052
Alignment:
Q  140 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 193  Q
    |||||||||  ||||||||| ||||||||||| || || |||||||||||||||    
T  7432105 gatgtttggagtatgaaggaatatggaaataaagaatcgtggactaaattgttc 7432052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 12133097 - 12133150
Alignment:
Q  140 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 193  Q
    ||||||||| |||||| ||||||||||||||  || || |||||||||||||||    
T  12133097 gatgtttgggttatgagggagtatggaaatagagagtcgtggactaaattgttc 12133150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 216
Target Start/End: Complemental strand, 9565880 - 9565804
Alignment:
Q  140 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaagatca 216  Q
    ||||||||| ||||||||||||| ||| || | || |||||||||||||||| |  ||||||| ||||  |||||||    
T  9565880 gatgtttggattatgaaggagtacggagatcaagagtcttggactaaattgtacattgttcctaacatacaagatca 9565804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 11081813 - 11081865
Alignment:
Q  140 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgtt 192  Q
    ||||||||| |||||||||||||||||||||| || |||||||||||||||||    
T  11081813 gatgtttgggttatgaaggagtatggaaataaagagtcttggactaaattgtt 11081865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 23766913 - 23766860
Alignment:
Q  140 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 193  Q
    ||||||||| ||||||| || ||||||||||| || ||||||||||||||||||    
T  23766913 gatgtttggattatgaaagaatatggaaataaagagtcttggactaaattgttc 23766860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 23816761 - 23816708
Alignment:
Q  140 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 193  Q
    ||||||||| ||||||| || ||||||||||| || ||||||||||||||||||    
T  23816761 gatgtttggattatgaaagaatatggaaataaagagtcttggactaaattgttc 23816708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 195
Target Start/End: Original strand, 3181717 - 3181772
Alignment:
Q  140 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccg 195  Q
    |||||||||||||||||||| ||||||||| | || ||||||| ||||||| ||||    
T  3181717 gatgtttggcttatgaaggaatatggaaatgaagagtcttggattaaattgatccg 3181772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 189
Target Start/End: Original strand, 20292995 - 20293044
Alignment:
Q  140 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaatt 189  Q
    ||||||||| |||||||||| ||||||| ||| || ||||||||||||||    
T  20292995 gatgtttggattatgaaggaatatggaattaaagagtcttggactaaatt 20293044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 23769697 - 23769644
Alignment:
Q  140 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 193  Q
    ||||||||| |||||||||| ||||| ||||| |  ||||||||||||||||||    
T  23769697 gatgtttggattatgaaggaatatgggaataaagcgtcttggactaaattgttc 23769644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 23819545 - 23819492
Alignment:
Q  140 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 193  Q
    ||||||||| |||||||||| ||||| ||||| |  ||||||||||||||||||    
T  23819545 gatgtttggattatgaaggaatatgggaataaagcgtcttggactaaattgttc 23819492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 201
Target Start/End: Original strand, 24723352 - 24723415
Alignment:
Q  138 cagatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcc 201  Q
    |||| |||||||||||||||||||||  ||||| ||| ||||||||||||||||||| ||||||    
T  24723352 cagaggtttggcttatgaaggagtatataaatagtgaatcttggactaaattgttccatgttcc 24723415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 24723215 - 24723256
Alignment:
Q  1 tgtttctcttgatttggagaaggagtcttatcgagagctatt 42  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  24723215 tgtttctcttgatttggagaaggagtcttatcaagagctatt 24723256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 1078211 - 1078158
Alignment:
Q  140 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 193  Q
    ||||||||| |||||||||||||||||||||  || || |||||||||||||||    
T  1078211 gatgtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttc 1078158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 3927063 - 3927112
Alignment:
Q  144 tttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 193  Q
    ||||| |||||||||| |||||||||||  ||||||||||||||||||||    
T  3927063 tttgggttatgaaggattatggaaataaaaattcttggactaaattgttc 3927112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 190
Target Start/End: Complemental strand, 1421220 - 1421170
Alignment:
Q  140 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattg 190  Q
    |||||||||||||||||||| || |||||||| || ||||||| |||||||    
T  1421220 gatgtttggcttatgaaggaatacggaaataaagagtcttggattaaattg 1421170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 216
Target Start/End: Original strand, 39298977 - 39299053
Alignment:
Q  140 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaagatca 216  Q
    ||||||||| || ||||||| | ||||||||| || || ||||||||||| | | |||||||| ||||| |||||||    
T  39298977 gatgtttgggttttgaaggaatgtggaaataaagagtcctggactaaattttacagtgttccttacatggaagatca 39299053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 7564798 - 7564741
Alignment:
Q  144 tttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcc 201  Q
    ||||| |||||||||| |||||||| || ||||||||||||||||||||| |||||||    
T  7564798 tttgggttatgaaggattatggaaacaaggattcttggactaaattgttcagtgttcc 7564741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 370833 - 370783
Alignment:
Q  143 gtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 193  Q
    |||||| |||||||| | ||||||||||| |||||||||||||||||||||    
T  370833 gtttgggttatgaagaattatggaaataaagattcttggactaaattgttc 370783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 176338 - 176387
Alignment:
Q  144 tttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 193  Q
    |||||| |||||| || ||||||||||| |||||||||||||||||||||    
T  176338 tttggcgtatgaatgattatggaaataaagattcttggactaaattgttc 176387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 193
Target Start/End: Complemental strand, 1442149 - 1442106
Alignment:
Q  150 ttatgaaggagtatggaaataatgattcttggactaaattgttc 193  Q
    |||||||||| ||||||| ||| |||||||||||||||||||||    
T  1442149 ttatgaaggattatggaattaaagattcttggactaaattgttc 1442106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 213
Target Start/End: Original strand, 19119065 - 19119136
Alignment:
Q  142 tgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaaga 213  Q
    ||||||| | |||||||| ||||||||| | || ||||||||||||||||| | ||||||| ||||| ||||    
T  19119065 tgtttggttgatgaaggaatatggaaatgaagagtcttggactaaattgtttcatgttccttacatggaaga 19119136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 213
Target Start/End: Original strand, 19126359 - 19126430
Alignment:
Q  142 tgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaaga 213  Q
    ||||||| | |||||||| ||||||||| | || ||||||||||||||||| | ||||||| ||||| ||||    
T  19126359 tgtttggttgatgaaggaatatggaaatgaagagtcttggactaaattgtttcatgttccttacatggaaga 19126430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 189
Target Start/End: Complemental strand, 9703938 - 9703888
Alignment:
Q  139 agatgtttggcttatgaaggagtatggaaataatgattcttggactaaatt 189  Q
    |||| |||||||||||||||| ||||||||||  |||| ||||||||||||    
T  9703938 agatatttggcttatgaaggaatatggaaatagagatttttggactaaatt 9703888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 202
Target Start/End: Original strand, 17368366 - 17368428
Alignment:
Q  140 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcct 202  Q
    ||||||||||| ||||| |||||||||||| | |  ||||||||||||||||| | |||||||    
T  17368366 gatgtttggctgatgaaagagtatggaaatgaagggtcttggactaaattgtttcatgttcct 17368428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 191
Target Start/End: Complemental strand, 24417536 - 24417486
Alignment:
Q  141 atgtttggcttatgaaggagtatggaaataatgattcttggactaaattgt 191  Q
    |||||||| ||||||| || ||||||||||| || ||||||||||||||||    
T  24417536 atgtttggattatgaaagaatatggaaataaagaatcttggactaaattgt 24417486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 9819876 - 9819831
Alignment:
Q  144 tttggcttatgaaggagtatggaaataatgattcttggactaaatt 189  Q
    |||||||||||||||| ||||||||||  || ||||||||||||||    
T  9819876 tttggcttatgaaggaatatggaaatagagactcttggactaaatt 9819831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 192
Target Start/End: Complemental strand, 1470970 - 1470922
Alignment:
Q  144 tttggcttatgaaggagtatggaaataatgattcttggactaaattgtt 192  Q
    ||||| ||||||| || ||||||||||| ||||||||| ||||||||||    
T  1470970 tttgggttatgaaagattatggaaataaagattcttggtctaaattgtt 1470922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 24629269 - 24629213
Alignment:
Q  133 ttttacagatgtttggcttatgaaggagtatggaaataatgattcttggactaaatt 189  Q
    ||||||||||||||||||||||||||| || |||||||| || ||||||| ||||||    
T  24629269 ttttacagatgtttggcttatgaaggaatacggaaataaagagtcttggattaaatt 24629213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 181
Target Start/End: Complemental strand, 23896188 - 23896147
Alignment:
Q  140 gatgtttggcttatgaaggagtatggaaataatgattcttgg 181  Q
    |||||||||||||||||||| ||||||||||| || ||||||    
T  23896188 gatgtttggcttatgaaggaatatggaaataaagagtcttgg 23896147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 51381502 - 51381438
Alignment:
Q  144 tttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatg 208  Q
    ||||| ||||||| || ||||||||| | || |||||||||||||||||| || ||||| |||||    
T  51381502 tttggattatgaaagaatatggaaatgaagagtcttggactaaattgttcagtattccttacatg 51381438  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 204
Target Start/End: Original strand, 51858606 - 51858670
Alignment:
Q  140 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctca 204  Q
    ||||||||| | |||||||| |||||||||   || |||||||||||||||||  ||||||||||    
T  51858606 gatgtttggatcatgaaggaatatggaaatgtagaatcttggactaaattgttaagtgttcctca 51858670  T

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Target: scaffold0044 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 215
Target Start/End: Original strand, 89147 - 89218
Alignment:
Q  144 tttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtgttcctcacatgaaagatc 215  Q
    ||||| |||||||||| ||||||||||| || |||||||||||||||| |  ||||||| ||||| ||||||    
T  89147 tttgggttatgaaggaatatggaaataaagagtcttggactaaattgtacaatgttccttacatggaagatc 89218  T

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Target: scaffold0015 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 190
Target Start/End: Complemental strand, 32380 - 32330
Alignment:
Q  140 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattg 190  Q
    |||||||||||||||||||| ||||||||||| || ||||||| |||||||    
T  32380 gatgtttggcttatgaaggaatatggaaataaagactcttggattaaattg 32330  T

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Target: scaffold0015; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 40440 - 40382
Alignment:
Q  132 cttttacagatgtttggcttatgaaggagtatggaaataatgattcttggactaaattg 190  Q
    ||||||| |||||||||||||||||||| |||| |||||| || ||||||| |||||||    
T  40440 cttttactgatgtttggcttatgaaggaatatgaaaataaagactcttggattaaattg 40382  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 192
Target Start/End: Original strand, 55419788 - 55419834
Alignment:
Q  146 tggcttatgaaggagtatggaaataatgattcttggactaaattgtt 192  Q
    |||||||||||||  ||||||||||| ||||||||||||||||||||    
T  55419788 tggcttatgaaggtttatggaaataaagattcttggactaaattgtt 55419834  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 11032902 - 11032960
Alignment:
Q  132 cttttacagatgtttggcttatgaaggagtatggaaataatgattcttggactaaattg 190  Q
    ||||||| ||||||||||| |||||||| || |||||||| || ||||||| |||||||    
T  11032902 cttttaccgatgtttggctcatgaaggaatacggaaataaagagtcttggattaaattg 11032960  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 22672175 - 22672125
Alignment:
Q  143 gtttggcttatgaaggagtatggaaataatgattcttggactaaattgttc 193  Q
    |||||| | |||||||| ||||||||||| || ||||||||||||||||||    
T  22672175 gtttgggtaatgaaggaatatggaaataaggaatcttggactaaattgttc 22672125  T

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