View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18624_low_4 (Length: 481)
Name: NF18624_low_4
Description: NF18624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18624_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 453; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 9 - 473
Target Start/End: Original strand, 182279 - 182743
Alignment:
| Q |
9 |
atcataggtgatgtcaacactggaaaaaccaagcttctgggtggtattcgaggtaacaattttcaagaaggcggtatcaaccaacagagtggcacaacat |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
182279 |
atcataggtgatgtcaacactggaaaaaccaagcttctgggtggtattcgaggtaacaattttcaagaaggcggtatcgaccaacagagtggcacaacat |
182378 |
T |
|
| Q |
109 |
actttcctgtccatggaagtaggcgtctactggttattgataccccaggccaccaatcattcaataactcaatttcttggggttcaagtctatgtgatat |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
182379 |
actttcctgtccatggaagtaggcgtctactggttattgataccccaggccaccaatcattcaataactcaatttcttggggttcaagtctatgtgatat |
182478 |
T |
|
| Q |
209 |
tgcaattttggttgtagatattatgcatggcttagacccagaaactgtagagtcattccgtctactaaaaacgaggaacacacaattcattgttgcattg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
182479 |
tgcaattttggttgtagatattatgcatggcttagacccagaaactgtagagtcattccgtctactaaaaacgaggaacacacaattcattgttgcattg |
182578 |
T |
|
| Q |
309 |
aataaggtgagtcactattccacttttatgacccgctgctttcaaattcctatatttgttctttcaggttactcagttttgtcacatggttcttgcaaca |
408 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
182579 |
aataaggtgagtcactattccacttttatgacccgctgctttcaaattccaatatttgttctttcaggttattcagttttgtcacatggttcttgcaaca |
182678 |
T |
|
| Q |
409 |
ttgcaggtggacaggatttgtgcctggcaaacatgtcgtaatgctccaattcgtgaagcattgat |
473 |
Q |
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| T |
182679 |
ttgcaggtggacaggatttgtgcctggcaaacatgtcgtaatgctccaattcgtgaagcattgat |
182743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 344 - 473
Target Start/End: Complemental strand, 593520 - 593390
Alignment:
| Q |
344 |
ctgctttcaaattcctatatttgttctttc-aggttactcagttttgtcacatggttcttgcaacattgcaggtggacaggatttgtgcctggcaaacat |
442 |
Q |
| |
|
|||||| |||| ||| ||||||||||||| | ||||||||||||||||||| ||| ||||||||||| ||||||| |||||||||||||||||||||| |
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|
| T |
593520 |
ctgcttgcaaaatccaatatttgttctttataagttactcagttttgtcacactgttgttgcaacattgtaggtggataggatttgtgcctggcaaacat |
593421 |
T |
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| Q |
443 |
gtcgtaatgctccaattcgtgaagcattgat |
473 |
Q |
| |
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|||| |||||||||||||||||||||||||| |
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| T |
593420 |
gtcgcaatgctccaattcgtgaagcattgat |
593390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 158 - 240
Target Start/End: Complemental strand, 29220313 - 29220230
Alignment:
| Q |
158 |
ccaccaatcattcaataactcaatttcttggggttcaagtctatg-tgatattgcaattttggttgtagatattatgcatggct |
240 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||| | ||||||| ||||| |
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| T |
29220313 |
ccaccaatcattcaataactcccatttttggggttcaagtctatgttgatattgcaattttggttgttaacattatgcgtggct |
29220230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 190 - 319
Target Start/End: Complemental strand, 593657 - 593528
Alignment:
| Q |
190 |
gttcaagtctatgtgatattgcaattttggttgtagatattatgcatggcttagacccagaaactgtagagtcattccgtctactaaaaacgaggaacac |
289 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||| |||||||||||| || | | | ||||| |||| ||| || |||| |||||| || ||||| |
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| T |
593657 |
gttcaggtctatgtgatatcgcaattttggttgtagacattatgcatggcatacagcaacaaactatagattcactcgatctattaaaaaggaccaacac |
593558 |
T |
|
| Q |
290 |
acaattcattgttgcattgaataaggtgag |
319 |
Q |
| |
|
| | ||||| ||| |||||||||||||| |
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|
| T |
593557 |
agacttcatcattgtcttgaataaggtgag |
593528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 473
Target Start/End: Complemental strand, 29220104 - 29220016
Alignment:
| Q |
385 |
ttttgtcacatggttcttgcaacattgcaggtggacaggatttgtgcctggcaaacatgtcgtaatgctccaattcgtgaagcattgat |
473 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||| | |||| | |||| ||||||||| ||||||||||||| || ||||| |||| |
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| T |
29220104 |
ttttgtcacactgttcttgcaactttgcaggtggatatgattcctcgctggaaaacatgtcctaatgctccaatttgtaaagcagtgat |
29220016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 3013984 - 3014042
Alignment:
| Q |
9 |
atcataggtgatgtcaacactggaaaaaccaagcttctgggtggtattcgaggtaacaa |
67 |
Q |
| |
|
||||||||||||| ||||||| ||||||| |||||| ||| |||||||||||||||| |
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|
| T |
3013984 |
atcataggtgatgcgtacactggcaaaaccacgcttctcggttgtattcgaggtaacaa |
3014042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 3014133 - 3014173
Alignment:
| Q |
197 |
tctatgtgatattgcaattttggttgtagatattatgcatg |
237 |
Q |
| |
|
||||||||||||||| ||||||||||| || |||||||||| |
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|
| T |
3014133 |
tctatgtgatattgctattttggttgttgacattatgcatg |
3014173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 2e-56; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 133 - 320
Target Start/End: Original strand, 44604951 - 44605138
Alignment:
| Q |
133 |
gtctactggttattgataccccaggccaccaatcattcaataactcaatttcttggggttcaagtctatgtgatattgcaattttggttgtagatattat |
232 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| || ||| |||||||| |||||||||||||||||||||||||||| || ||||| |
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| T |
44604951 |
gtctactggttattgataccccaggccacgaatcattcaataacttaaggtctcggggttcaggtctatgtgatattgcaattttggttgttgacattat |
44605050 |
T |
|
| Q |
233 |
gcatggcttagacccagaaactgtagagtcattccgtctactaaaaacgaggaacacacaattcattgttgcattgaataaggtgagt |
320 |
Q |
| |
|
|||||||||||| ||| ||||| |||||||| || |||| |||||| |||||||||| | |||||||||||||| |||||||||||| |
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| T |
44605051 |
gcatggcttagagccacaaactatagagtcactcaatctattaaaaatgaggaacacagagttcattgttgcattaaataaggtgagt |
44605138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 133 - 319
Target Start/End: Original strand, 44626716 - 44626902
Alignment:
| Q |
133 |
gtctactggttattgataccccaggccaccaatcattcaataactcaatttcttggggttcaagtctatgtgatattgcaattttggttgtagatattat |
232 |
Q |
| |
|
||||||||||||||||||||||||| ||| | ||||||||||||| | ||| |||||||| |||||||||||||||||||||||||||| || ||||| |
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| T |
44626716 |
gtctactggttattgataccccaggacacgagtcattcaataacttgaggtctcggggttcaggtctatgtgatattgcaattttggttgtggacattat |
44626815 |
T |
|
| Q |
233 |
gcatggcttagacccagaaactgtagagtcattccgtctactaaaaacgaggaacacacaattcattgttgcattgaataaggtgag |
319 |
Q |
| |
|
|||||||||||| ||| ||||| |||||||| || |||| |||||| ||||||||| ||||||| |||||||||||||||||||| |
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| T |
44626816 |
gcatggcttagagccacaaactatagagtcactcaatctattaaaaatgaggaacactgaattcatcgttgcattgaataaggtgag |
44626902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 374 - 468
Target Start/End: Original strand, 44605171 - 44605265
Alignment:
| Q |
374 |
aggttactcagttttgtcacatggttcttgcaacattgcaggtggacaggatttgtgcctggcaaacatgtcgtaatgctccaattcgtgaagca |
468 |
Q |
| |
|
||||| |||| |||||||||| ||||||||||||||| |||| |||||| ||| || |||| |||||||||| ||||||||||||||| ||||| |
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|
| T |
44605171 |
aggttcctcaattttgtcacactgttcttgcaacattgtaggttgacaggctttatggctggaaaacatgtcgcaatgctccaattcgtaaagca |
44605265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 397 - 468
Target Start/End: Original strand, 44626965 - 44627036
Alignment:
| Q |
397 |
gttcttgcaacattgcaggtggacaggatttgtgcctggcaaacatgtcgtaatgctccaattcgtgaagca |
468 |
Q |
| |
|
|||||||||||||||||||| |||||| ||| || |||| |||||||||| ||||||||||||||| ||||| |
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|
| T |
44626965 |
gttcttgcaacattgcaggttgacaggctttatggctggaaaacatgtcgcaatgctccaattcgtaaagca |
44627036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 44626554 - 44626608
Alignment:
| Q |
25 |
acactggaaaaaccaagcttctgggtggtattcgaggtaacaattttcaagaagg |
79 |
Q |
| |
|
||||||| |||||||||||||||| | | |||||||||| |||| |||||||||| |
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| T |
44626554 |
acactggcaaaaccaagcttctggattgcattcgaggtaccaatgttcaagaagg |
44626608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 237
Target Start/End: Complemental strand, 40672570 - 40672520
Alignment:
| Q |
187 |
ggggttcaagtctatgtgatattgcaattttggttgtagatattatgcatg |
237 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||| || |||||||||| |
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|
| T |
40672570 |
ggggttcatatctatgtgatattgctattttggttgttgacattatgcatg |
40672520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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