View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18624_low_5 (Length: 475)
Name: NF18624_low_5
Description: NF18624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18624_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 19 - 465
Target Start/End: Original strand, 5576993 - 5577427
Alignment:
| Q |
19 |
cctttgtgagtattaatataatcatcaaaaccttgaaatgtgataaggatgaattgggggttataaagaagattgatagagtttgaaaagactaattttc |
118 |
Q |
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| T |
5576993 |
cctttgtgagtattaatataatcatcaacaccttgaaatgtgataaggatgaattgggggttattaagaagattga----------aaagactaattttc |
5577082 |
T |
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| Q |
119 |
taattttatatagtaagacagaaacaagactattgttaaactgtccatccaatgttactgtttgaagcaaaaatccaccaagactacactaccttactaa |
218 |
Q |
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| T |
5577083 |
taattttatatagtaagacagaaacaagactattgttaaactgtccatccaatgttactgtttgaagcaaaaatccaccaagactacactaccttactaa |
5577182 |
T |
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| Q |
219 |
tgaaaagttagaaaagtaaatggaagcatcaataatattatattcacctcaaactcgaagcatatcaatatctagctagcttcttgaaatgttctttaat |
318 |
Q |
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| T |
5577183 |
tgaaaagttagaaaattaaatggaagcatcaataa---tatattcacctcaaacttgaagcatatcaatatctagctagcttcttgaaatgttctttaat |
5577279 |
T |
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| Q |
319 |
aagatggaaagagtttgcaaagactaatatactaacttcatatttgaagaaggtgattgattgtcgataagagttgacgtttcaaga-nnnnnnnnnata |
417 |
Q |
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| T |
5577280 |
aagatggaaagagtttgcaaagactaatatactaacttcatatttgaagaaggtgattgatggtcgataagagttgacgtttgaagatttttttatttta |
5577379 |
T |
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| Q |
418 |
ttttaactatttgaactagttttattaaaggcattttagtccattcat |
465 |
Q |
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| T |
5577380 |
ttttaactatttgaactagttttattaaaggcattttagtccattcat |
5577427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 355
Target Start/End: Original strand, 5574033 - 5574090
Alignment:
| Q |
296 |
agcttcttgaaatgttctttaataagatggaaagagtttgcaaagactaatatactaact |
355 |
Q |
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| T |
5574033 |
agcttcttgaaatgttc-ttaagaagatggaaagagtttgaaaaaact-atatactaact |
5574090 |
T |
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