View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18624_low_7 (Length: 431)
Name: NF18624_low_7
Description: NF18624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18624_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 401
Target Start/End: Complemental strand, 27145111 - 27144726
Alignment:
| Q |
18 |
cttaagtttgtaggcaacgaaaacgggtggcccaaatggttctatccggttcaggtacnnnnnnnnnn-gtaattaacattcaaatccaatgatgttaac |
116 |
Q |
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| T |
27145111 |
cttaagtttgtaggcaacgaaaacgggtggcccaaatggttctatccggttcaggtactttttttttttgtaattaacattcaaatccaatgatgttaac |
27145012 |
T |
|
| Q |
117 |
atatgtataagtataaccatagatgtagtctttgattctttttagaaacagttagtctgctaaataaggtactctaagattgttattgcattcaaagttg |
216 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
27145011 |
atatgtataagtataaccatagatgtagtctttaattctttttagaaacagttagtcttctaaataaggtactctaagattgttattgcattgaaagttg |
27144912 |
T |
|
| Q |
217 |
tctttcttatgccc-tctctataggccataggtgatagtacaaagtaataaaattttgaagttttacttgtcagtatatcttaaatttctgattttactt |
315 |
Q |
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||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27144911 |
tcttttttatgcccctctctataggccataggtgatagtacaaagtaataaaattttgaagttttacttgtcagtatatcttaaatttctgattttactt |
27144812 |
T |
|
| Q |
316 |
gcaatttcttcagaaatgaaaattttccctctttctttgcttgtatgcattatttttgcttaccaataatcataatactttttctg |
401 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27144811 |
gcaatttcttcagaaatgaaaatttttcctctttctttgcttgtatgcattatttttgcttaccaataatcataatactttttctg |
27144726 |
T |
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