View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18625_high_1 (Length: 698)

Name: NF18625_high_1
Description: NF18625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18625_high_1
NF18625_high_1
[»] chr8 (1 HSPs)
chr8 (48-681)||(34426383-34427016)


Alignment Details
Target: chr8 (Bit Score: 562; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 48 - 681
Target Start/End: Original strand, 34426383 - 34427016
Alignment:
Q  48 gggatctgttacccaataaacgacagaaagtgagttaagcaactccataacaagtgagcgcattcattaaaataagacatggattggcagacactaaaag 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34426383 gggatctgttacccaataaacgacagaaagtgagttaagcaactccataacaagtgagcgcattcattaaaataagacatggattggcagacactaaaag 34426482  T
Q  148 aatcaaatatatcccacaaacaataaacagacaaaatttcatccacctcactgtttatagaagactgcataacaatgaaacaaaatagtacctcaaattc 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  34426483 aatcaaatatatcccacaaacaataaacagacaaaatttcatccacctcactgtttatagaagactgcataacaatgaaacaaaataggacctcaaattc 34426582  T
Q  248 aaagcaacnnnnnnnnnnnnnnnngacagtctcagttcccaaataattgagatgatacaaagtggaattgatactgaaactagcactgttgtgaaaattt 347  Q
    ||||||||                |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  34426583 aaagcaacaaaaaaaaaccaaaaagacagtctcagttcccaaattattgagatgatacaaagtggtattgatactgaaactagcactgttgtgaaaattt 34426682  T
Q  348 ctgatcgaaaatatcttgaggcatgtaaactattccaagttctttttatctgtgactatgtatgagagtggcaaaagactcaaatctatgctattaagaa 447  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34426683 ctgatcgaaaatatcttgaggcatgtaaactattccaagttctttttatctgtgactatgtatgagagtggcaaaagactcaaatctatgctattaagaa 34426782  T
Q  448 tctgaaaatatctaaactaataatcgagtctgagaccattggtcaagtcaagaaaggattatctaaaaagctacaatatttaaggttgaggcaacatcaa 547  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  34426783 tctgaaaatatctaaactaataatcgagtctgagaccattggtcaagtcaagaaaggattatctaacaagctacaatatttaaggttgaggcaacatcaa 34426882  T
Q  548 atttcatgctgttcatttgcattgtcaatcacataaagggcacaggatgtttgacatcaggagtacaaagttaatcaagatatgagataatatttcatag 647  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  34426883 atttcatgctgttcatttgcattgtcaatcacataaagggcacaggatgtttgacatcagtagtacaaagttaatcaagatatgagataataattcatag 34426982  T
Q  648 tttatacctctctggtgttttcaggcatggaatc 681  Q
    ||||||||||||||||||||||||||||||||||    
T  34426983 tttatacctctctggtgttttcaggcatggaatc 34427016  T

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