View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18625_high_2 (Length: 516)
Name: NF18625_high_2
Description: NF18625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18625_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 39 - 498
Target Start/End: Complemental strand, 44920306 - 44919851
Alignment:
| Q |
39 |
gttgcatgtggacaatgcctcagccaacaaaacaattagtaaccctctttactactcatcgattcgattccacaatggcagatcaggacaagtaagcctt |
138 |
Q |
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| T |
44920306 |
gttgcatgtggacaatgccttagccaacaaaacaattagtaaccctctttactactcatcgattcgattccacaatggcagatcaggacaagcaagcctt |
44920207 |
T |
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| Q |
139 |
gtatctggtatcgacggtctagattattttgtgcggccttgatttagtggatttagggcaagtccatatcatggtccatgtaagtgcgagtgacttgaga |
238 |
Q |
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| T |
44920206 |
gtatctggtatcgacggtctagattattttgtgcggccttgatttagtggatttagggaaagtccatatcatggtccatgtaagtgcgagtgacttgaga |
44920107 |
T |
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| Q |
239 |
ttacttggaacccataatagccaacgaccgtattgtctctttatttattataatgacacaactgacttagaaatcagatgaaaacaatacaataaaagaa |
338 |
Q |
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| T |
44920106 |
ttactcggaacccataatagccaacgaccgtattgtctctttatttattataatgacacaactgacttacaaatcagatgaaaataatacaataaaagaa |
44920007 |
T |
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| Q |
339 |
actatttattgtgaaagactaaaagttgcattatctatatatagtatgagagactaaccttnnnnnnnnntgtcatggactaaaataggacttgactcgc |
438 |
Q |
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| T |
44920006 |
actatttattatgaaagactaaaagttgcattatc----tatagtatgagagactaaccttaaaaaaaaatgtcattgactaaaataggacttgactcgc |
44919911 |
T |
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| Q |
439 |
aaaaattattaaaagatttataattataaatgagatatttttagaaaaatgtagagaaat |
498 |
Q |
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| T |
44919910 |
aaaaattattaaaagatttataattataaatgagatatttttagaaaaatgtagtgaaat |
44919851 |
T |
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