View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18625_high_3 (Length: 464)
Name: NF18625_high_3
Description: NF18625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18625_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 13 - 370
Target Start/End: Complemental strand, 9500781 - 9500426
Alignment:
| Q |
13 |
aacctgtgggaagtagaatcatattttaattgtcaagcaataaaattgacaagccagtgatacatccaaacacagtatttatcaatgtagcaaataggtt |
112 |
Q |
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| T |
9500781 |
aacctatgggaagtagaatcatattttaattgtcaagcaataaaattgacaagccagtgatacttccaaacatagtatttatcattgtagcaaataggtt |
9500682 |
T |
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| Q |
113 |
ggagaacagaaaattcaactatggtcttccatacaccctagaacctagtcaagtttcactttagctgaagggtggagattggtttaatctccacccaagc |
212 |
Q |
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| T |
9500681 |
ggagaacagaaaattcaactatggtcttccatacaccctagaacctagtcaagtttcactttagctgaagggtggagattggtttaatctccacccaagc |
9500582 |
T |
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| Q |
213 |
agagagcaataatcatagttgtcaatcccaaatagaaatgaggagccttctatcccaaaagcataccagataccaggatgacttcaataccaataaccgg |
312 |
Q |
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| T |
9500581 |
agagagcaataatcatagttgtcaatcccaaatagaaatgaggagccttctatcccaaaagcataccagataccaggatgacttcaataccaataaccgg |
9500482 |
T |
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| Q |
313 |
cttttacttataaactacaagtaatttatatttatattacgttacacacataaatgtt |
370 |
Q |
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| T |
9500481 |
attttacttataa--tacaagtaatttatatttatattacgttatacacataaatgtt |
9500426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 399 - 464
Target Start/End: Complemental strand, 9500397 - 9500332
Alignment:
| Q |
399 |
ttcaggcatagttgataaatcaataggatagggcttaaaattgttacatacacaaatcataaaata |
464 |
Q |
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| T |
9500397 |
ttcaggcatagttgataaatcaataggatagggcttaaaattgttacatacacaaatcataaaata |
9500332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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