View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18625_high_6 (Length: 428)
Name: NF18625_high_6
Description: NF18625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18625_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 35254393 - 35254674
Alignment:
| Q |
1 |
aagaaagaaaatataataagaagataaagaatagaatatgtagaatcacacaaaagctgaattatccatattatataagaccaatgaaataatgcaagga |
100 |
Q |
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||||||||||||||||||||| ||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35254393 |
aagaaagaaaatataataaga---taaagaaaagaaaatgtagaatcacacacaagctgaattatccatattatataagaccaatgaaataatgcaagga |
35254489 |
T |
|
| Q |
101 |
gcatcaaagaaataaagatttttgggtaaaatgaattaagcagaagcatacacaccagggggaaaatgtccggtaacatgagcttcattttttaaaatct |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35254490 |
gcatcaaagaaataaagatttttaggtaaaatgaattaagcagaagcatacacaccagggggaaaatgtccggtaacatgagcttcatttttgaaaatct |
35254589 |
T |
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| Q |
201 |
cagcagtgtttgacaatcccttcttcttgaggtaatcatacagaaagttttgaaaactacaaagaacacacaggattcatattac |
285 |
Q |
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| T |
35254590 |
cagcagtgtttgacaatcccttcttcttgaggtaatcatacagaaagttttgaaaactacaaagaacacacaggattcatattac |
35254674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 154 - 285
Target Start/End: Original strand, 35248045 - 35248176
Alignment:
| Q |
154 |
accagggggaaaatgtccggtaacatgagcttcattttttaaaatctcagcagtgtttgacaatcccttcttcttgaggtaatcatacagaaagttttga |
253 |
Q |
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||||||| ||| |||||||| ||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
35248045 |
accagggagaatatgtccggaaactcgagcttcatttttgaaaatcttagcagtgtttgacaatcccttcttcttgaagtaatcacacagaaagttttga |
35248144 |
T |
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| Q |
254 |
aaactacaaagaacacacaggattcatattac |
285 |
Q |
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| T |
35248145 |
aaactacaaagaacacacaggattcgtattac |
35248176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 35247871 - 35248008
Alignment:
| Q |
1 |
aagaaagaaaatataataagaagataaagaatagaatatgtagaatcacacaaaagctgaattatccatattatataagaccaatgaa----ataatgca |
96 |
Q |
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|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||| || | |||||| |||||||| |
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| T |
35247871 |
aagaaagaaaatataataccaagataaagaaaagaatatgtagaatcacacaaaagctcaattatccatattata--aggcaaatgaatagtataatgca |
35247968 |
T |
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| Q |
97 |
aggagcatcaaagaaataaagatttttgggtaaaatgaat |
136 |
Q |
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||||||||||||||| || |||||||||||||||||| |
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| T |
35247969 |
aggagcatcaaagaagaaacagtttttgggtaaaatgaat |
35248008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 331 - 373
Target Start/End: Original strand, 35248218 - 35248260
Alignment:
| Q |
331 |
catgcatgcatgcagcattgtactctactcacagttcttcttt |
373 |
Q |
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| T |
35248218 |
catgcatgcatgcagcattgtactctactcacagttcttcttt |
35248260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 331 - 373
Target Start/End: Original strand, 35254716 - 35254758
Alignment:
| Q |
331 |
catgcatgcatgcagcattgtactctactcacagttcttcttt |
373 |
Q |
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| T |
35254716 |
catgcatgcatgcagcattgtactctactcacagttcttcttt |
35254758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 174 - 272
Target Start/End: Original strand, 35272626 - 35272724
Alignment:
| Q |
174 |
taacatgagcttcattttttaaaatctcagcagtgtttgacaatcccttcttcttgaggtaatcatacagaaagttttgaaaactacaaagaacacaca |
272 |
Q |
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|||| ||||||||||||| ||||||| ||||| | | ||||| ||||||||||||||||||| ||||||| ||||||||||||| |||||||||| |
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| T |
35272626 |
taacttgagcttcattttggaaaatctgtgcagtttccaagaatcctttcttcttgaggtaatcatgcagaaagatttgaaaactacacagaacacaca |
35272724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 327 - 369
Target Start/End: Original strand, 35279400 - 35279442
Alignment:
| Q |
327 |
catgcatgcatgcatgcagcattgtactctactcacagttctt |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35279400 |
catgcatgcatgcatgcagcattgtactctactcacagttctt |
35279442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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