View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18625_low_10 (Length: 284)
Name: NF18625_low_10
Description: NF18625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18625_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 266
Target Start/End: Original strand, 4081712 - 4081971
Alignment:
| Q |
16 |
atttatccccagccatgtcaaaaagcacaattatactgagaaaaaaggtgggaaaaatatcgcagaaggagtaacatcaagcaacattcaaaagaacagt |
115 |
Q |
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| T |
4081712 |
atttatccccagccatgtcaaaaagcacaattatactgagaaaaaaggtgggaaaaatatcgcagaacgagcaacatcacgcaacattcaaaagaacagt |
4081811 |
T |
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| Q |
116 |
tccgctaagaataaatctgttggaaaatacttcctccat---------taaacatattttgcatttttcacaattttttaaaaaagttgttagaacaatt |
206 |
Q |
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| T |
4081812 |
tccgctaagaataaatctgttggaaaatactccctccatccctgtatgtaaacatattttgcatttttcacaatttttaaaaaaagttgttagaacaatt |
4081911 |
T |
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| Q |
207 |
aatttgtctatattgtatgttcttaagaaaagttattaatgcaattaatgtgtttagttt |
266 |
Q |
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| T |
4081912 |
aatgtgtctatattgtatgttcttaagaaaagttattaatgcaattaatgtgtttagttt |
4081971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 259
Target Start/End: Complemental strand, 4813560 - 4813527
Alignment:
| Q |
226 |
ttcttaagaaaagttattaatgcaattaatgtgt |
259 |
Q |
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| T |
4813560 |
ttcttaagaaaagttgttaatgcaattaatgtgt |
4813527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 34042171 - 34042108
Alignment:
| Q |
164 |
tttgcatttttcacaattttttaaaaaagttgttagaacaattaatttgtctatattgtatgtt |
227 |
Q |
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| T |
34042171 |
tttgcaattttcacatttttttaaaaaaattgttagttcaattaatgtgtctattttgtatgtt |
34042108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 262
Target Start/End: Original strand, 21012859 - 21012895
Alignment:
| Q |
226 |
ttcttaagaaaagttattaatgcaattaatgtgttta |
262 |
Q |
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| T |
21012859 |
ttcttaagaaaagttgttagtgcaattaatgtgttta |
21012895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 227
Target Start/End: Complemental strand, 8644913 - 8644849
Alignment:
| Q |
163 |
ttttgcatttttcacaattttttaaaaaagttgttagaacaattaatttgtctatattgtatgtt |
227 |
Q |
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| T |
8644913 |
ttttacatttttcacatttcttaaaaaaagttgttagcacaattaatatatctattttgtatgtt |
8644849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 262
Target Start/End: Original strand, 22651470 - 22651506
Alignment:
| Q |
226 |
ttcttaagaaaagttattaatgcaattaatgtgttta |
262 |
Q |
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| T |
22651470 |
ttcttaagaaaatttattaatgtaattaatgtgttta |
22651506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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