View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18625_low_5 (Length: 441)

Name: NF18625_low_5
Description: NF18625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18625_low_5
NF18625_low_5
[»] chr1 (34 HSPs)
chr1 (312-436)||(50231647-50231771)
chr1 (153-286)||(50231488-50231622)
chr1 (153-266)||(14494751-14494864)
chr1 (153-265)||(29699187-29699299)
chr1 (17-80)||(50231352-50231415)
chr1 (153-266)||(9041180-9041293)
chr1 (312-430)||(9046187-9046308)
chr1 (155-258)||(49265902-49266005)
chr1 (175-264)||(8528198-8528287)
chr1 (191-266)||(237171-237245)
chr1 (312-430)||(49266059-49266177)
chr1 (372-430)||(237323-237382)
chr1 (373-427)||(43575056-43575111)
chr1 (392-430)||(14494962-14495000)
chr1 (25-79)||(43575389-43575443)
chr1 (312-357)||(237294-237339)
chr1 (153-229)||(9046387-9046463)
chr1 (390-430)||(23997590-23997630)
chr1 (372-430)||(29699012-29699071)
chr1 (25-79)||(8528029-8528083)
chr1 (392-430)||(8528321-8528359)
chr1 (392-430)||(14246052-14246090)
chr1 (21-79)||(14494619-14494677)
chr1 (25-79)||(29699381-29699435)
chr1 (30-79)||(49162453-49162500)
chr1 (30-79)||(4413-4462)
chr1 (312-357)||(14246002-14246047)
chr1 (312-357)||(20132967-20133012)
chr1 (25-80)||(48995741-48995794)
chr1 (372-430)||(9041373-9041432)
chr1 (215-266)||(43575211-43575262)
chr1 (31-80)||(8007207-8007254)
chr1 (400-430)||(20132921-20132951)
chr1 (153-197)||(43575262-43575306)
[»] chr4 (36 HSPs)
chr4 (153-266)||(38001407-38001520)
chr4 (153-266)||(54198301-54198413)
chr4 (312-430)||(38001569-38001687)
chr4 (153-266)||(3729443-3729556)
chr4 (155-266)||(44814470-44814581)
chr4 (153-265)||(9162634-9162746)
chr4 (153-266)||(5524980-5525092)
chr4 (372-429)||(44814660-44814718)
chr4 (201-266)||(11974720-11974785)
chr4 (153-242)||(12216918-12217007)
chr4 (372-430)||(12217110-12217169)
chr4 (319-423)||(44673115-44673219)
chr4 (374-430)||(5094052-5094109)
chr4 (30-79)||(5524848-5524897)
chr4 (312-357)||(5525142-5525187)
chr4 (25-80)||(11974871-11974926)
chr4 (188-266)||(44673275-44673353)
chr4 (393-430)||(5525196-5525233)
chr4 (374-430)||(9162495-9162552)
chr4 (26-70)||(21796054-21796096)
chr4 (25-80)||(11333069-11333122)
chr4 (25-80)||(37144039-37144092)
chr4 (390-430)||(54198137-54198177)
chr4 (372-430)||(3729635-3729694)
chr4 (25-79)||(12214826-12214878)
chr4 (25-80)||(38001265-38001320)
chr4 (25-79)||(3729306-3729360)
chr4 (25-79)||(9162947-9163001)
chr4 (33-79)||(44814346-44814392)
chr4 (312-357)||(10726485-10726529)
chr4 (372-424)||(10726513-10726565)
chr4 (312-357)||(10940254-10940298)
chr4 (372-424)||(10940282-10940334)
chr4 (375-430)||(11974582-11974638)
chr4 (25-80)||(12216663-12216719)
chr4 (317-357)||(12217086-12217126)
[»] chr6 (21 HSPs)
chr6 (153-286)||(10927827-10927960)
chr6 (175-266)||(16316673-16316764)
chr6 (153-266)||(2537016-2537129)
chr6 (153-266)||(27901261-27901374)
chr6 (196-266)||(2438856-2438926)
chr6 (323-430)||(10927997-10928103)
chr6 (153-266)||(32249943-32250056)
chr6 (155-247)||(23915526-23915618)
chr6 (372-430)||(32249805-32249864)
chr6 (21-79)||(10927699-10927757)
chr6 (396-436)||(23915392-23915432)
chr6 (372-430)||(2537202-2537261)
chr6 (392-430)||(2438722-2438760)
chr6 (25-79)||(2536879-2536933)
chr6 (196-266)||(3676377-3676447)
chr6 (392-430)||(3676872-3676910)
chr6 (25-67)||(17590075-17590117)
chr6 (312-357)||(16316591-16316636)
chr6 (392-429)||(27901086-27901123)
chr6 (372-427)||(16316551-16316607)
chr6 (321-357)||(32249848-32249884)
[»] chr5 (20 HSPs)
chr5 (153-286)||(1190358-1190492)
chr5 (312-436)||(1190517-1190643)
chr5 (153-266)||(28263826-28263939)
chr5 (25-79)||(1190217-1190271)
chr5 (372-429)||(28222159-28222217)
chr5 (25-79)||(38938797-38938851)
chr5 (30-80)||(38938934-38938984)
chr5 (312-357)||(38938569-38938614)
chr5 (30-80)||(24007268-24007316)
chr5 (372-430)||(38938526-38938585)
chr5 (30-76)||(3160993-3161039)
chr5 (175-225)||(38938655-38938705)
chr5 (24-80)||(19514333-19514387)
chr5 (320-357)||(28263731-28263768)
chr5 (312-352)||(28222130-28222170)
chr5 (25-79)||(39850657-39850709)
chr5 (221-267)||(3160808-3160854)
chr5 (25-79)||(28221927-28221981)
chr5 (25-79)||(38939058-38939112)
chr5 (201-266)||(3160861-3160926)
[»] chr7 (33 HSPs)
chr7 (153-266)||(11321281-11321394)
chr7 (153-283)||(9306598-9306729)
chr7 (153-283)||(9302160-9302291)
chr7 (317-430)||(11321113-11321228)
chr7 (154-255)||(20621269-20621370)
chr7 (175-258)||(35492157-35492240)
chr7 (155-266)||(47220959-47221070)
chr7 (372-429)||(39677991-39678049)
chr7 (201-266)||(41755439-41755504)
chr7 (312-421)||(9302322-9302432)
chr7 (30-80)||(9302026-9302076)
chr7 (30-80)||(9306464-9306514)
chr7 (25-79)||(11321475-11321529)
chr7 (312-419)||(9306760-9306868)
chr7 (184-265)||(47912086-47912167)
chr7 (372-430)||(20621120-20621179)
chr7 (392-430)||(47912301-47912339)
chr7 (153-266)||(9307731-9307842)
chr7 (312-357)||(9329810-9329855)
chr7 (317-357)||(20621163-20621203)
chr7 (322-354)||(39677972-39678004)
chr7 (25-68)||(25801727-25801770)
chr7 (372-430)||(35492326-35492385)
chr7 (392-430)||(9303157-9303195)
chr7 (25-79)||(9329609-9329663)
chr7 (30-80)||(39675470-39675520)
chr7 (25-79)||(45022655-45022709)
chr7 (312-353)||(9303204-9303245)
chr7 (312-353)||(9307642-9307683)
chr7 (201-266)||(9329697-9329762)
chr7 (312-357)||(35492297-35492342)
chr7 (312-357)||(47221119-47221164)
chr7 (390-430)||(9329858-9329898)
[»] chr3 (38 HSPs)
chr3 (153-266)||(35369035-35369148)
chr3 (153-266)||(3422633-3422746)
chr3 (153-266)||(22101886-22101999)
chr3 (153-266)||(22176833-22176946)
chr3 (155-266)||(34492032-34492143)
chr3 (153-266)||(7115975-7116088)
chr3 (153-265)||(44822178-44822290)
chr3 (158-245)||(22833257-22833344)
chr3 (201-256)||(35863694-35863749)
chr3 (21-80)||(51139785-51139844)
chr3 (312-358)||(26053764-26053810)
chr3 (184-263)||(28096278-28096357)
chr3 (312-362)||(35369197-35369247)
chr3 (184-266)||(53359479-53359561)
chr3 (312-357)||(7115880-7115925)
chr3 (312-357)||(22176996-22177041)
chr3 (372-430)||(3422464-3422523)
chr3 (21-80)||(3424579-3424638)
chr3 (33-80)||(22176407-22176454)
chr3 (25-76)||(28096104-28096155)
chr3 (25-67)||(7116183-7116225)
chr3 (192-258)||(7116577-7116643)
chr3 (201-255)||(22101543-22101597)
chr3 (201-255)||(22176488-22176542)
chr3 (392-430)||(26057520-26057558)
chr3 (25-79)||(42897060-42897114)
chr3 (392-430)||(44822391-44822429)
chr3 (312-357)||(3422539-3422584)
chr3 (392-429)||(35863549-35863586)
chr3 (33-80)||(22101462-22101509)
chr3 (25-79)||(3422835-3422889)
chr3 (392-430)||(22176593-22176631)
chr3 (392-430)||(34492273-34492311)
chr3 (312-357)||(22102049-22102093)
chr3 (312-357)||(44822341-44822386)
chr3 (175-216)||(51139646-51139687)
chr3 (33-80)||(18461569-18461614)
chr3 (372-435)||(22102077-22102141)
[»] chr2 (31 HSPs)
chr2 (153-256)||(7061820-7061923)
chr2 (153-254)||(309805-309906)
chr2 (153-266)||(13594472-13594585)
chr2 (153-266)||(35193441-35193554)
chr2 (372-430)||(35193283-35193341)
chr2 (157-266)||(43528401-43528510)
chr2 (153-266)||(44539532-44539645)
chr2 (372-430)||(309997-310056)
chr2 (372-430)||(7062011-7062070)
chr2 (157-265)||(27339463-27339563)
chr2 (373-430)||(13594664-13594722)
chr2 (153-246)||(25047963-25048056)
chr2 (153-229)||(2222037-2222113)
chr2 (372-430)||(44539394-44539453)
chr2 (392-428)||(25047818-25047854)
chr2 (372-427)||(27339643-27339699)
chr2 (317-357)||(35193325-35193365)
chr2 (37-79)||(2221912-2221954)
chr2 (25-79)||(35193642-35193695)
chr2 (25-79)||(44539722-44539776)
chr2 (21-79)||(44973133-44973191)
chr2 (312-357)||(13594634-13594679)
chr2 (312-357)||(27339614-27339659)
chr2 (312-357)||(43528558-43528603)
chr2 (312-357)||(44539437-44539482)
chr2 (312-357)||(44972944-44972989)
chr2 (25-80)||(7061430-7061485)
chr2 (25-80)||(7061697-7061751)
chr2 (312-357)||(7061982-7062027)
chr2 (25-80)||(629370-629423)
chr2 (393-429)||(43528610-43528646)
[»] scaffold0066 (3 HSPs)
scaffold0066 (157-266)||(56426-56535)
scaffold0066 (375-436)||(56648-56710)
scaffold0066 (312-357)||(56616-56661)
[»] scaffold0025 (3 HSPs)
scaffold0025 (153-266)||(3497-3610)
scaffold0025 (372-436)||(3353-3419)
scaffold0025 (312-357)||(3403-3448)
[»] chr8 (10 HSPs)
chr8 (175-265)||(24432212-24432302)
chr8 (158-245)||(5592720-5592807)
chr8 (25-80)||(32889139-32889194)
chr8 (392-436)||(24432403-24432447)
chr8 (25-79)||(26527947-26527999)
chr8 (312-357)||(24409613-24409658)
chr8 (31-79)||(26528045-26528092)
chr8 (31-79)||(32889026-32889074)
chr8 (372-430)||(24409642-24409701)
chr8 (322-357)||(26528328-26528363)
[»] scaffold0123 (3 HSPs)
scaffold0123 (25-79)||(17415-17469)
scaffold0123 (201-264)||(17240-17303)
scaffold0123 (372-430)||(17100-17159)
[»] scaffold0031 (1 HSPs)
scaffold0031 (31-78)||(47466-47511)
[»] scaffold0990 (1 HSPs)
scaffold0990 (317-350)||(1083-1116)


Alignment Details
Target: chr1 (Bit Score: 86; Significance: 6e-41; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 312 - 436
Target Start/End: Original strand, 50231647 - 50231771
Alignment:
Q  312 tcatattacttttttatcagccgcttttatgttgtacatctgtgtttccctnnnnnnnnntgttgtacatctgtatcgttccctcaatacaaccgacaaa 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||         |||||||||||||||| |||||||||||||||||||||||    
T  50231647 tcatattacttttttatcagccgcttttatgttgtacatctgtgttttcctaaaaaaaaatgttgtacatctgtattgttccctcaatacaaccgacaaa 50231746  T
Q  412 gattgccaagtattttcatctctct 436  Q
    ||||||||||||||||||| |||||    
T  50231747 gattgccaagtattttcatatctct 50231771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 153 - 286
Target Start/End: Original strand, 50231488 - 50231622
Alignment:
Q  153 ggagaaaacttacacatagttacttatgagctgttcttactgttagttaattataaaataacacgtggattactaattcatgtcaataatcgtctccgtt 252  Q
    |||||||||||||||| |||| ||||||| |||||||| |||||||  ||||||||||||||||||||||||||||| |||||||||||||||  |||||    
T  50231488 ggagaaaacttacacacagtttcttatgaactgttcttgctgttagccaattataaaataacacgtggattactaatccatgtcaataatcgttcccgtt 50231587  T
Q  253 aaccctattttacc-ccgtacccgcatatcaatct 286  Q
    |||||| |||| || ||||| ||||||||||||||    
T  50231588 aaccctctttttcctccgtaaccgcatatcaatct 50231622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 153 - 266
Target Start/End: Original strand, 14494751 - 14494864
Alignment:
Q  153 ggagaaaacttacacatagttacttatgagctgttcttactgttagttaattataaaataacacgtggattactaattcatgtcaataatcgtctccgtt 252  Q
    |||||||||||||||| | || ||||||   |||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  14494751 ggagaaaacttacacacaatttcttatggattgttcttactgttagtcaattataaaataacacgtggattactaatccatgtcactaatcgtctccgtt 14494850  T
Q  253 aaccctattttacc 266  Q
    |||||| |||||||    
T  14494851 aaccctcttttacc 14494864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 153 - 265
Target Start/End: Complemental strand, 29699299 - 29699187
Alignment:
Q  153 ggagaaaacttacacatagttacttatgagctgttcttactgttagttaattataaaataacacgtggattactaattcatgtcaataatcgtctccgtt 252  Q
    ||||||||||||| || | || |||||||  |||||||||||||||  ||||||||||||||||||||||||||||| ||||||| | |||||| |||||    
T  29699299 ggagaaaacttacgcacaattccttatgaattgttcttactgttagccaattataaaataacacgtggattactaatccatgtcactgatcgtccccgtt 29699200  T
Q  253 aaccctattttac 265  Q
    |||| | ||||||    
T  29699199 aaccatcttttac 29699187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 50231352 - 50231415
Alignment:
Q  17 agtaatatctatgtataaagaaaactacccctttcagcacatttttgggttgaaattttctttt 80  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  50231352 agtaatatctatgtataaagaaaactacccctttcagcacacctttgggttgaaattttctttt 50231415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 153 - 266
Target Start/End: Original strand, 9041180 - 9041293
Alignment:
Q  153 ggagaaaacttacacatagttacttatgagctgttcttactgttagttaattataaaataacacgtggattactaattcatgtcaataatcgtctccgtt 252  Q
    |||||||||||||| | | || ||||||| |||||||| |||||||  ||||||||||||| ||||| ||| ||||| ||||||| ||||||| ||||||    
T  9041180 ggagaaaacttacatacaattccttatgaactgttcttgctgttagccaattataaaataatacgtgaattgctaatccatgtcattaatcgtttccgtt 9041279  T
Q  253 aaccctattttacc 266  Q
    |||||| |||||||    
T  9041280 aaccctcttttacc 9041293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 312 - 430
Target Start/End: Complemental strand, 9046308 - 9046187
Alignment:
Q  312 tcatattacttttttatcagccgcttttatgttgtacatctgtgtttccctnnnnnnnnntgttgtacatctgtatcg---ttccctcaatacaaccgac 408  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||||         |||||||||||| | | |   | |||||||||||||||      
T  9046308 tcatgttacttttctatcagccgcttttatgttgtacatctgtgtttccctaaaaaaaaatgttgtacatctatgttgtgttcccctcaatacaaccggg 9046209  T
Q  409 aaagattgccaagtattttcat 430  Q
    ||||||||||||||||||||||    
T  9046208 aaagattgccaagtattttcat 9046187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 155 - 258
Target Start/End: Original strand, 49265902 - 49266005
Alignment:
Q  155 agaaaacttacacatagttacttatgagctgttcttactgttagttaattataaaataacacgtggattactaattcatgtcaataatcgtctccgttaa 254  Q
    |||||||||| |||||||| ||||||| ||||||||||| |||| ||||||||||||||| |||| |||||||||   ||||| |||| ||  |||||||    
T  49265902 agaaaacttatacatagttccttatgaactgttcttactattagctaattataaaataacgcgtgaattactaatcagtgtcactaattgttcccgttaa 49266001  T
Q  255 ccct 258  Q
    ||||    
T  49266002 ccct 49266005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 175 - 264
Target Start/End: Original strand, 8528198 - 8528287
Alignment:
Q  175 cttatgagctgttcttactgttagttaattataaaataacacgtggattactaattcatgtcaataatcgtctccgttaaccctatttta 264  Q
    |||||||  ||||||||||  |||  ||||||||||||||||||||||||||||| ||||||||| |||||| | ||||||||| |||||    
T  8528198 cttatgaattgttcttactactagccaattataaaataacacgtggattactaatccatgtcaatgatcgtccctgttaaccctctttta 8528287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 191 - 266
Target Start/End: Original strand, 237171 - 237245
Alignment:
Q  191 actgttagttaattataaaataacacgtggattactaattcatgtcaataatcgtctccgttaaccctattttacc 266  Q
    ||||||||  ||||||||||||||||||| ||||||||| ||||||| ||||||||||| |||||||| |||||||    
T  237171 actgttagccaattataaaataacacgtg-attactaatccatgtcactaatcgtctcctttaaccctcttttacc 237245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 312 - 430
Target Start/End: Original strand, 49266059 - 49266177
Alignment:
Q  312 tcatattacttttttatcagccgcttttatgttgtacatctgtgtttccctnnnnnnnnntgttgtacatctgtatcgttccc-tcaatacaaccgacaa 410  Q
    |||| |||||||||||| || ||||||||| |||||||||||||||| |||         |||||||||||||| | |||||| ||||||||| ||| ||    
T  49266059 tcatgttacttttttatgagtcgcttttatattgtacatctgtgttttcctaaaaaaaa-tgttgtacatctgtgttgttcccctcaatacaatcgataa 49266157  T
Q  411 agattgccaagtattttcat 430  Q
    ||||||||||||||||||||    
T  49266158 agattgccaagtattttcat 49266177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 372 - 430
Target Start/End: Original strand, 237323 - 237382
Alignment:
Q  372 tgttgtacatctgtatcgttccc-tcaatacaaccgacaaagattgccaagtattttcat 430  Q
    |||||||||||||| | |||||| |||||||||||||||||||||||||| |||||||||    
T  237323 tgttgtacatctgtgttgttcccctcaatacaaccgacaaagattgccaaatattttcat 237382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 373 - 427
Target Start/End: Complemental strand, 43575111 - 43575056
Alignment:
Q  373 gttgtacatctgtatcgttc-cctcaatacaaccgacaaagattgccaagtatttt 427  Q
    ||||||||||||| | |||| |||||||||||||||||||||||||||||||||||    
T  43575111 gttgtacatctgtgttgttctcctcaatacaaccgacaaagattgccaagtatttt 43575056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 392 - 430
Target Start/End: Original strand, 14494962 - 14495000
Alignment:
Q  392 ccctcaatacaaccgacaaagattgccaagtattttcat 430  Q
    |||||||||||||||||||||||||||||||||||||||    
T  14494962 ccctcaatacaaccgacaaagattgccaagtattttcat 14495000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 43575443 - 43575389
Alignment:
Q  25 ctatgtataaagaaaactacccctttcagcacatttttgggttgaaattttcttt 79  Q
    |||| ||||||||||| ||||||||||| |||| |||||||||||||||||||||    
T  43575443 ctatatataaagaaaattacccctttcaacacacttttgggttgaaattttcttt 43575389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 312 - 357
Target Start/End: Original strand, 237294 - 237339
Alignment:
Q  312 tcatattacttttttatcagccgcttttatgttgtacatctgtgtt 357  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||    
T  237294 tcatattacttttttataagccgattttatgttgtacatctgtgtt 237339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 153 - 229
Target Start/End: Complemental strand, 9046463 - 9046387
Alignment:
Q  153 ggagaaaacttacacatagttacttatgagctgttcttactgttagttaattataaaataacacgtggattactaat 229  Q
    ||||||||| |||||| |||| |||  ||  |||||||| ||||||  |||||||||||||||||||||||||||||    
T  9046463 ggagaaaacgtacacacagttccttgcgaattgttcttattgttagccaattataaaataacacgtggattactaat 9046387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 390 - 430
Target Start/End: Original strand, 23997590 - 23997630
Alignment:
Q  390 ttccctcaatacaaccgacaaagattgccaagtattttcat 430  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  23997590 ttccctcaatacaaccgacaaagattgccaactattttcat 23997630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 372 - 430
Target Start/End: Complemental strand, 29699071 - 29699012
Alignment:
Q  372 tgttgtacatctgtatcgttccc-tcaatacaaccgacaaagattgccaagtattttcat 430  Q
    ||||| |||||||| | |||||| ||||||||||||||||||||| ||||||||||||||    
T  29699071 tgttggacatctgtgttgttcccctcaatacaaccgacaaagatttccaagtattttcat 29699012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 8528029 - 8528083
Alignment:
Q  25 ctatgtataaagaaaactacccctttcagcacatttttgggttgaaattttcttt 79  Q
    |||| ||| |||||||||||||||||| |||||||||||||||  ||||||||||    
T  8528029 ctatatatcaagaaaactacccctttcggcacatttttgggttagaattttcttt 8528083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 430
Target Start/End: Original strand, 8528321 - 8528359
Alignment:
Q  392 ccctcaatacaaccgacaaagattgccaagtattttcat 430  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  8528321 ccctcaatacaaccgacaaagattgtcaagtattttcat 8528359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 430
Target Start/End: Original strand, 14246052 - 14246090
Alignment:
Q  392 ccctcaatacaaccgacaaagattgccaagtattttcat 430  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  14246052 ccctcaatacaaccaacaaagattgccaagtattttcat 14246090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 14494619 - 14494677
Alignment:
Q  21 atatctatgtataaagaaaactacccctttcagcacatttttgggttgaaattttcttt 79  Q
    |||| ||| |||||||||||||| ||||||||||||| |||||||||| | ||||||||    
T  14494619 atatatatatataaagaaaactaaccctttcagcacacttttgggttggacttttcttt 14494677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 29699435 - 29699381
Alignment:
Q  25 ctatgtataaagaaaactacccctttcagcacatttttgggttgaaattttcttt 79  Q
    |||| ||||||||||||||||| ||||| |||| |||||||||| ||||||||||    
T  29699435 ctatatataaagaaaactacccttttcaacacacttttgggttggaattttcttt 29699381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 49162453 - 49162500
Alignment:
Q  30 tataaagaaaactacccctttcagcacatttttgggttgaaattttcttt 79  Q
    |||||||||||||||||||||||||||  |||||||||||| ||||||||    
T  49162453 tataaagaaaactacccctttcagcac--ttttgggttgaatttttcttt 49162500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 4462 - 4413
Alignment:
Q  30 tataaagaaaactacccctttcagcacatttttgggttgaaattttcttt 79  Q
    |||||||||||||||||||||||||| | |||||||||| | ||||||||    
T  4462 tataaagaaaactacccctttcagcatacttttgggttggacttttcttt 4413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 357
Target Start/End: Original strand, 14246002 - 14246047
Alignment:
Q  312 tcatattacttttttatcagccgcttttatgttgtacatctgtgtt 357  Q
    |||| ||||||||||||||||||||||||| || ||||||||||||    
T  14246002 tcatgttacttttttatcagccgcttttatattatacatctgtgtt 14246047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 357
Target Start/End: Complemental strand, 20133012 - 20132967
Alignment:
Q  312 tcatattacttttttatcagccgcttttatgttgtacatctgtgtt 357  Q
    |||| |||||||||||||||||| ||||||||||||||| ||||||    
T  20133012 tcatgttacttttttatcagccgattttatgttgtacatgtgtgtt 20132967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 48995794 - 48995741
Alignment:
Q  25 ctatgtataaagaaaactacccctttcagcacatttttgggttgaaattttctttt 80  Q
    |||| ||||||||||||||| |||||||  |||||||||||||||| |||||||||    
T  48995794 ctatatataaagaaaactactcctttca--acatttttgggttgaatttttctttt 48995741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 430
Target Start/End: Original strand, 9041373 - 9041432
Alignment:
Q  372 tgttgtacatctgtatcgttccc-tcaatacaaccgacaaagattgccaagtattttcat 430  Q
    |||||||||||| | | |||||| ||||||||| |||||||||||| |||||||||||||    
T  9041373 tgttgtacatctatgttgttcccctcaatacaatcgacaaagattgtcaagtattttcat 9041432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 43575262 - 43575211
Alignment:
Q  215 acgtggattactaattcatgtcaataatcgtctccgttaaccctattttacc 266  Q
    ||||||||||||||| ||||||| |||||||| || |||||||| |||||||    
T  43575262 acgtggattactaatccatgtcagtaatcgtccccattaaccctcttttacc 43575211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 80
Target Start/End: Original strand, 8007207 - 8007254
Alignment:
Q  31 ataaagaaaactacccctttcagcacatttttgggttgaaattttctttt 80  Q
    ||||||||||||| ||||||||||||  |||||||||||| |||||||||    
T  8007207 ataaagaaaactatccctttcagcac--ttttgggttgaatttttctttt 8007254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 430
Target Start/End: Complemental strand, 20132951 - 20132921
Alignment:
Q  400 acaaccgacaaagattgccaagtattttcat 430  Q
    |||||||||||||||||||||||||||||||    
T  20132951 acaaccgacaaagattgccaagtattttcat 20132921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 43575306 - 43575262
Alignment:
Q  153 ggagaaaacttacacatagttacttatgagctgttcttactgtta 197  Q
    ||||||||||||||||||||| ||||||| || |||| |||||||    
T  43575306 ggagaaaacttacacatagttccttatgaacttttctaactgtta 43575262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 153 - 266
Target Start/End: Original strand, 38001407 - 38001520
Alignment:
Q  153 ggagaaaacttacacatagttacttatgagctgttcttactgttagttaattataaaataacacgtggattactaattcatgtcaataatcgtctccgtt 252  Q
    ||||||||||||| || | || ||||||| ||||||||||||||||| |||||||||||||||| |||||||||||| ||||||| ||||| || |||||    
T  38001407 ggagaaaacttacgcacaattccttatgaactgttcttactgttagtcaattataaaataacacatggattactaatccatgtcactaatcatccccgtt 38001506  T
Q  253 aaccctattttacc 266  Q
    ||||||||||||||    
T  38001507 aaccctattttacc 38001520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 153 - 266
Target Start/End: Complemental strand, 54198413 - 54198301
Alignment:
Q  153 ggagaaaacttacacatagttacttatgagctgttcttactgttagttaattataaaataacacgtggattactaattcatgtcaataatcgtctccgtt 252  Q
    |||||||||||||||| |||| |||||||  |||||||| ||||||  ||||||||||||||||||||||||||||| ||||||| ||||| || |||||    
T  54198413 ggagaaaacttacacacagtttcttatgaaatgttcttaatgttagccaattataaaataacacgtggattactaatccatgtcactaatcatc-ccgtt 54198315  T
Q  253 aaccctattttacc 266  Q
    |||||| |||||||    
T  54198314 aaccctcttttacc 54198301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 312 - 430
Target Start/End: Original strand, 38001569 - 38001687
Alignment:
Q  312 tcatattacttttttatcagccgcttttatgttgtacatctgtgtttccctnnnnnnnnntgttgtacatctgtatcgttccc-tcaatacaaccgacaa 410  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||| ||||         |||||||||| ||| | |||||| ||||||||||||||||    
T  38001569 tcatattacttttttatcagccgctttaatgttgtacatttgtgttcccctaaaaaaaa-tgttgtacatgtgtgttgttcccctcaatacaaccgacaa 38001667  T
Q  411 agattgccaagtattttcat 430  Q
    ||||||||||||||||||||    
T  38001668 agattgccaagtattttcat 38001687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 153 - 266
Target Start/End: Original strand, 3729443 - 3729556
Alignment:
Q  153 ggagaaaacttacacatagttacttatgagctgttcttactgttagttaattataaaataacacgtggattactaattcatgtcaataatcgtctccgtt 252  Q
    ||||||||| |||||| | || ||||||| ||||||||||| | ||| ||||||||||||||| ||||||||||||| ||||||| ||||||||   |||    
T  3729443 ggagaaaacatacacacaattccttatgaactgttcttactctaagtcaattataaaataacatgtggattactaatacatgtcactaatcgtccatgtt 3729542  T
Q  253 aaccctattttacc 266  Q
    |||||| |||||||    
T  3729543 aaccctcttttacc 3729556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 155 - 266
Target Start/End: Original strand, 44814470 - 44814581
Alignment:
Q  155 agaaaacttacacatagttacttatgagctgttcttactgttagttaattataaaataacacgtggattactaattcatgtcaataatcgtctccgttaa 254  Q
    ||||||||| |||| | ||  |||||| ||||||||||||||||  |||||||||||||||||| ||||||||||  |||||| |||| ||| |||||||    
T  44814470 agaaaacttccacacaattctttatgaactgttcttactgttagccaattataaaataacacgtagattactaatctatgtcactaattgtccccgttaa 44814569  T
Q  255 ccctattttacc 266  Q
    |||| |||||||    
T  44814570 ccctcttttacc 44814581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 153 - 265
Target Start/End: Complemental strand, 9162746 - 9162634
Alignment:
Q  153 ggagaaaacttacacatagttacttatgagctgttcttactgttagttaattataaaataacacgtggattactaattcatgtcaataatcgtctccgtt 252  Q
    ||||||||||||| || | || |||||||  ||||||||||||| |  |||||||||||||||||||||||| |||| ||||||| ||||| ||  ||||    
T  9162746 ggagaaaacttacgcacaattccttatgaattgttcttactgtttgccaattataaaataacacgtggattaataatccatgtcattaatcttccacgtt 9162647  T
Q  253 aaccctattttac 265  Q
    |||||| ||||||    
T  9162646 aaccctcttttac 9162634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 153 - 266
Target Start/End: Original strand, 5524980 - 5525092
Alignment:
Q  153 ggagaaaacttacacatagttacttatgagctgttcttactgttagtt-aattataaaataacacgtggattactaattcatgtcaataatcgtctccgt 251  Q
    |||||||||||||||| | || |||||||||||||||||||||||    ||||||||||||||| || |||||||||| ||||||| |  ||||| ||||    
T  5524980 ggagaaaacttacacacaattccttatgagctgttcttactgttaacccaattataaaataacaagtagattactaatccatgtcact--tcgtccccgt 5525077  T
Q  252 taaccctattttacc 266  Q
    |||| || |||||||    
T  5525078 taactctcttttacc 5525092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 372 - 429
Target Start/End: Original strand, 44814660 - 44814718
Alignment:
Q  372 tgttgtacatctgtatcgttccc-tcaatacaaccgacaaagattgccaagtattttca 429  Q
    |||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||    
T  44814660 tgttgtacatctgtgttgttcccctcaatacaaccgacaaagattgccaagtattttca 44814718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 201 - 266
Target Start/End: Complemental strand, 11974785 - 11974720
Alignment:
Q  201 aattataaaataacacgtggattactaattcatgtcaataatcgtctccgttaaccctattttacc 266  Q
    |||||||||||||||| ||||||| ||||||||| || ||||||||||||||||| || |||||||    
T  11974785 aattataaaataacacatggattagtaattcatgccactaatcgtctccgttaactctcttttacc 11974720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 153 - 242
Target Start/End: Original strand, 12216918 - 12217007
Alignment:
Q  153 ggagaaaacttacacatagttacttatgagctgttcttactgttagttaattataaaataacacgtggattactaattcatgtcaataat 242  Q
    |||||||||||||||| | || |||| || ||||||||| || |||  ||||||||||||||| ||||||||||||| ||||||| ||||    
T  12216918 ggagaaaacttacacacaattccttaagatctgttcttattgatagccaattataaaataacatgtggattactaatccatgtcagtaat 12217007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 372 - 430
Target Start/End: Original strand, 12217110 - 12217169
Alignment:
Q  372 tgttgtacatctgtatcgttccct-caatacaaccgacaaagattgccaagtattttcat 430  Q
    |||||||||| ||| | ||||||| |||||||||||||||||||||||||||||||||||    
T  12217110 tgttgtacatatgtgttgttcccttcaatacaaccgacaaagattgccaagtattttcat 12217169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 319 - 423
Target Start/End: Complemental strand, 44673219 - 44673115
Alignment:
Q  319 acttttttatcagccgcttttatgttgtacatctgtgtttccctnnnnnnnnntgttgtacatctgtatcgtt-ccctcaatacaaccgacaaagattgc 417  Q
    |||||||||||| |||||||||||||||||||||||| ||  ||         |||| ||||||||| | ||| ||||||||||||||||||||||||||    
T  44673219 acttttttatcaaccgcttttatgttgtacatctgtg-ttgactaaaaaaaaatgttttacatctgtgttgttcccctcaatacaaccgacaaagattgc 44673121  T
Q  418 caagta 423  Q
    ||||||    
T  44673120 caagta 44673115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 374 - 430
Target Start/End: Complemental strand, 5094109 - 5094052
Alignment:
Q  374 ttgtacatctgtatcgttccc-tcaatacaaccgacaaagattgccaagtattttcat 430  Q
    |||||||||||| | |||||| |||||||||||||||||||||| |||||||||||||    
T  5094109 ttgtacatctgtgttgttcccctcaatacaaccgacaaagattgtcaagtattttcat 5094052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 5524848 - 5524897
Alignment:
Q  30 tataaagaaaactacccctttcagcacatttttgggttgaaattttcttt 79  Q
    |||||||||||||||||||||||||||| |||||||||| | ||||||||    
T  5524848 tataaagaaaactacccctttcagcacacttttgggttgtacttttcttt 5524897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 312 - 357
Target Start/End: Original strand, 5525142 - 5525187
Alignment:
Q  312 tcatattacttttttatcagccgcttttatgttgtacatctgtgtt 357  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||    
T  5525142 tcatgttacttttttatcagccgattttatgttgtacatctgtgtt 5525187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 11974926 - 11974871
Alignment:
Q  25 ctatgtataaagaaaactacccctttcagcacatttttgggttgaaattttctttt 80  Q
    |||| |||||||||||||||||||||||||| |  ||||||||||| |||||||||    
T  11974926 ctatatataaagaaaactacccctttcagcatacatttgggttgaacttttctttt 11974871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 266
Target Start/End: Complemental strand, 44673353 - 44673275
Alignment:
Q  188 cttactgttagttaattataaaataacacgtggattactaattcatgtcaataatcgtctccgttaaccctattttacc 266  Q
    |||||||| ||  |||||||| |||||||||| |||||||||||| |||| |||| ||  ||||||||||| |||||||    
T  44673353 cttactgtaagccaattataagataacacgtgaattactaattcacgtcactaattgttcccgttaaccctcttttacc 44673275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 393 - 430
Target Start/End: Original strand, 5525196 - 5525233
Alignment:
Q  393 cctcaatacaaccgacaaagattgccaagtattttcat 430  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  5525196 cctcaatacaacccacaaagattgccaagtattttcat 5525233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 374 - 430
Target Start/End: Complemental strand, 9162552 - 9162495
Alignment:
Q  374 ttgtacatctgtatcgttccc-tcaatacaaccgacaaagattgccaagtattttcat 430  Q
    |||| ||||||||| |||||| ||||||||||||||||||| |||||| |||||||||    
T  9162552 ttgtgcatctgtattgttcccctcaatacaaccgacaaagaatgccaaatattttcat 9162495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 21796054 - 21796096
Alignment:
Q  26 tatgtataaagaaaactacccctttcagcacatttttgggttgaa 70  Q
    ||||||||||||||||||||||||||||  |||||||||||||||    
T  21796054 tatgtataaagaaaactacccctttcag--catttttgggttgaa 21796096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 11333069 - 11333122
Alignment:
Q  25 ctatgtataaagaaaactacccctttcagcacatttttgggttgaaattttctttt 80  Q
    |||| |||||||||||||||||||||||||||  ||||||| |||| |||||||||    
T  11333069 ctatatataaagaaaactacccctttcagcac--ttttgggctgaacttttctttt 11333122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 37144092 - 37144039
Alignment:
Q  25 ctatgtataaagaaaactacccctttcagcacatttttgggttgaaattttctttt 80  Q
    |||| |||||||||||||||||||||||||||  |||||||||| | |||||||||    
T  37144092 ctatatataaagaaaactacccctttcagcac--ttttgggttggatttttctttt 37144039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 430
Target Start/End: Complemental strand, 54198177 - 54198137
Alignment:
Q  390 ttccctcaatacaaccgacaaagattgccaagtattttcat 430  Q
    |||||||||||||||||| |||||||| |||||||||||||    
T  54198177 ttccctcaatacaaccgataaagattgtcaagtattttcat 54198137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 430
Target Start/End: Original strand, 3729635 - 3729694
Alignment:
Q  372 tgttgtacatctgtatcgttccc-tcaatacaaccgacaaagattgccaagtattttcat 430  Q
    |||||||||||||| | |||||| ||||||||| ||||||| ||| ||||||||||||||    
T  3729635 tgttgtacatctgtgttgttcccctcaatacaatcgacaaaaatttccaagtattttcat 3729694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 12214878 - 12214826
Alignment:
Q  25 ctatgtataaagaaaactacccctttcagcacatttttgggttgaaattttcttt 79  Q
    ||||||||||||||||||||||||||||  ||| ||||||| |||| ||||||||    
T  12214878 ctatgtataaagaaaactacccctttca--acacttttgggctgaatttttcttt 12214826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 38001265 - 38001320
Alignment:
Q  25 ctatgtataaagaaaactacccctttcagcacatttttgggttgaaattttctttt 80  Q
    |||| |||||||||||||  |||||||| |||| |||||||||| |||||||||||    
T  38001265 ctatatataaagaaaactgtccctttcaacacacttttgggttggaattttctttt 38001320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 3729306 - 3729360
Alignment:
Q  25 ctatgtataaagaaaactacccctttcagcacatttttgggttgaaattttcttt 79  Q
    |||| |||||||||||||| || ||||| |||| |||||||||| ||||||||||    
T  3729306 ctatatataaagaaaactatccatttcaacacacttttgggttggaattttcttt 3729360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 9163001 - 9162947
Alignment:
Q  25 ctatgtataaagaaaactacccctttcagcacatttttgggttgaaattttcttt 79  Q
    |||| |||||||||||||||||| ||||||||| |||| ||||| | ||||||||    
T  9163001 ctatatataaagaaaactaccccgttcagcacacttttcggttggacttttcttt 9162947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 44814346 - 44814392
Alignment:
Q  33 aaagaaaactacccctttcagcacatttttgggttgaaattttcttt 79  Q
    |||||||||||||| |||||||||| |||||||| ||| ||||||||    
T  44814346 aaagaaaactacccttttcagcacacttttgggtagaacttttcttt 44814392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 357
Target Start/End: Original strand, 10726485 - 10726529
Alignment:
Q  312 tcatattacttttttatcagccgcttttatgttgtacatctgtgtt 357  Q
    |||| |||||||||||||||| | ||||||||||||||||||||||    
T  10726485 tcatgttacttttttatcagc-gattttatgttgtacatctgtgtt 10726529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 424
Target Start/End: Original strand, 10726513 - 10726565
Alignment:
Q  372 tgttgtacatctgtatcgttccc-tcaatacaaccgacaaagattgccaagtat 424  Q
    |||||||||||||| | |||||| |||||||||||||| |||||||||||||||    
T  10726513 tgttgtacatctgtgttgttcccctcaatacaaccgac-aagattgccaagtat 10726565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 357
Target Start/End: Original strand, 10940254 - 10940298
Alignment:
Q  312 tcatattacttttttatcagccgcttttatgttgtacatctgtgtt 357  Q
    |||| |||||||||||||||| | ||||||||||||||||||||||    
T  10940254 tcatgttacttttttatcagc-gattttatgttgtacatctgtgtt 10940298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 424
Target Start/End: Original strand, 10940282 - 10940334
Alignment:
Q  372 tgttgtacatctgtatcgttccc-tcaatacaaccgacaaagattgccaagtat 424  Q
    |||||||||||||| | |||||| |||||||||||||| |||||||||||||||    
T  10940282 tgttgtacatctgtgttgttcccctcaatacaaccgac-aagattgccaagtat 10940334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 430
Target Start/End: Complemental strand, 11974638 - 11974582
Alignment:
Q  375 tgtacatctgtatcgttccc-tcaatacaaccgacaaagattgccaagtattttcat 430  Q
    ||||||||||| | |||||| | |||||| |||||||||||| ||||||||||||||    
T  11974638 tgtacatctgtgttgttccccttaatacagccgacaaagattaccaagtattttcat 11974582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 12216663 - 12216719
Alignment:
Q  25 ctatgtataaagaaaactacccctttcagcaca-tttttgggttgaaattttctttt 80  Q
    ||||||||||| | ||||| ||||||||||||| ||||| ||||| |||||||||||    
T  12216663 ctatgtataaaaataactatccctttcagcacactttttaggttggaattttctttt 12216719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 357
Target Start/End: Original strand, 12217086 - 12217126
Alignment:
Q  317 ttacttttttatcagccgcttttatgttgtacatctgtgtt 357  Q
    |||||||||||||||| | ||||||||||||||| ||||||    
T  12217086 ttacttttttatcagcagattttatgttgtacatatgtgtt 12217126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 153 - 286
Target Start/End: Original strand, 10927827 - 10927960
Alignment:
Q  153 ggagaaaacttacacatagttacttatgagctgttcttactgttagttaattataaaataacacgtggattactaattcatgtcaataatcgtctccgtt 252  Q
    |||||||| ||||||| |||| ||||| |  |||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||  ||||    
T  10927827 ggagaaaa-ttacacacagttccttataaattgttcttactgttagccaattataaaataacacgtggattactaatccatgtcaataatcgtcctcgtt 10927925  T
Q  253 aaccctattttacc-ccgtacccgcatatcaatct 286  Q
    |||||| ||||||| ||||| || |||||||||||    
T  10927926 aaccctcttttacctccgtaaccacatatcaatct 10927960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 175 - 266
Target Start/End: Complemental strand, 16316764 - 16316673
Alignment:
Q  175 cttatgagctgttcttactgttagttaattataaaataacacgtggattactaattcatgtcaataatcgtctccgttaaccctattttacc 266  Q
    |||||||  |||||||| |||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||    
T  16316764 cttatgaattgttcttaatgttagctaattataaaataacacgtggattactaatccatgtcactaatcgtctccgttaaccctcttttacc 16316673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 153 - 266
Target Start/End: Original strand, 2537016 - 2537129
Alignment:
Q  153 ggagaaaacttacacatagttacttatgagctgttcttactgttagttaattataaaataacacgtggattactaattcatgtcaataatcgtctccgtt 252  Q
    ||||||||||||  || | || |||||||  |||||||||| ||||  |||||||||||||||||||| |||||||| ||||||| |||||||| |||||    
T  2537016 ggagaaaacttaagcacaattccttatgaattgttcttacttttagccaattataaaataacacgtgggttactaatccatgtcactaatcgtccccgtt 2537115  T
Q  253 aaccctattttacc 266  Q
    ||||||||||||||    
T  2537116 aaccctattttacc 2537129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 153 - 266
Target Start/End: Complemental strand, 27901374 - 27901261
Alignment:
Q  153 ggagaaaacttacacatagttacttatgagctgttcttactgttagttaattataaaataacacgtggattactaattcatgtcaataatcgtctccgtt 252  Q
    |||||||||||||||| |||| ||||||| ||||||||||   |||  |||||||||||||||| |||||||||||| ||||| | | |||||| |||||    
T  27901374 ggagaaaacttacacacagttccttatgaactgttcttacgactagccaattataaaataacacatggattactaatccatgttactgatcgtccccgtt 27901275  T
Q  253 aaccctattttacc 266  Q
    |||||| |||||||    
T  27901274 aaccctcttttacc 27901261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 196 - 266
Target Start/End: Complemental strand, 2438926 - 2438856
Alignment:
Q  196 tagttaattataaaataacacgtggattactaattcatgtcaataatcgtctccgttaaccctattttacc 266  Q
    |||| |||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||| |||||||    
T  2438926 tagtcaattataaaataacacgtggattagtaattcatgtcactaatcgtccccgttaaccctcttttacc 2438856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 323 - 430
Target Start/End: Original strand, 10927997 - 10928103
Alignment:
Q  323 ttttatcagccgcttttatgttgtacatctgtgtttccctnnnnnnnnntgttgtacatctgtatcgttcc-ctcaatacaaccgacaaagattgccaag 421  Q
    ||||||||||||||||||||||||| ||||||||||||||          ||||||||||||| | ||||| |||||||||||||||||||| |||||||    
T  10927997 ttttatcagccgcttttatgttgtatatctgtgtttccctaaaaaaaa--gttgtacatctgtgttgttccactcaatacaaccgacaaagactgccaag 10928094  T
Q  422 tattttcat 430  Q
    |||||||||    
T  10928095 tattttcat 10928103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 153 - 266
Target Start/End: Complemental strand, 32250056 - 32249943
Alignment:
Q  153 ggagaaaacttacacatagttacttatgagctgttcttactgttagttaattataaaataacacgtggattactaattcatgtcaataatcgtctccgtt 252  Q
    ||||||||||||| || | || ||||| |  ||||||||||||||   |||||||||||||||||| |||||||||| ||||||| |||||||||| |||    
T  32250056 ggagaaaacttacccacaattccttataaattgttcttactgttaaccaattataaaataacacgtagattactaatccatgtcactaatcgtctctgtt 32249957  T
Q  253 aaccctattttacc 266  Q
    |||| | |||||||    
T  32249956 aaccatcttttacc 32249943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 155 - 247
Target Start/End: Complemental strand, 23915618 - 23915526
Alignment:
Q  155 agaaaacttacacatagttacttatgagctgttcttactgttagttaattataaaataacacgtggattactaattcatgtcaataatcgtct 247  Q
    |||||||||||||| | ||  |||||| ||||||||| ||||||  |||||||||||||||||||||||||||||  |||||| |||||||||    
T  23915618 agaaaacttacacacaattctttatgaactgttcttattgttagccaattataaaataacacgtggattactaatctatgtcactaatcgtct 23915526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 372 - 430
Target Start/End: Complemental strand, 32249864 - 32249805
Alignment:
Q  372 tgttgtacatctgtatcgttccc-tcaatacaaccgacaaagattgccaagtattttcat 430  Q
    |||||||||||||| | |||||| |||||||||||||||| |||||||||||||||||||    
T  32249864 tgttgtacatctgtgttgttcccctcaatacaaccgacaaggattgccaagtattttcat 32249805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 10927699 - 10927757
Alignment:
Q  21 atatctatgtataaagaaaactacccctttcagcacatttttgggttgaaattttcttt 79  Q
    |||| ||| ||||||||||| |||||||||||||||| ||||| |||||||||||||||    
T  10927699 atatatatatataaagaaaattacccctttcagcacacttttgagttgaaattttcttt 10927757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 436
Target Start/End: Complemental strand, 23915432 - 23915392
Alignment:
Q  396 caatacaaccgacaaagattgccaagtattttcatctctct 436  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  23915432 caatacaaccgacaaagattgccaagtattttcatatctct 23915392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 372 - 430
Target Start/End: Original strand, 2537202 - 2537261
Alignment:
Q  372 tgttgtacatctgtatcgttccc-tcaatacaaccgacaaagattgccaagtattttcat 430  Q
    |||||||||||||| | |||||| ||||||||| ||||||| ||||||||||||||||||    
T  2537202 tgttgtacatctgttttgttcccctcaatacaatcgacaaaaattgccaagtattttcat 2537261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 430
Target Start/End: Complemental strand, 2438760 - 2438722
Alignment:
Q  392 ccctcaatacaaccgacaaagattgccaagtattttcat 430  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  2438760 ccctcaatacaatcgacaaagattgccaagtattttcat 2438722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 2536879 - 2536933
Alignment:
Q  25 ctatgtataaagaaaactacccctttcagcacatttttgggttgaaattttcttt 79  Q
    |||| |||||||||||||||| ||||||||||| |||||||||| | ||||||||    
T  2536879 ctatatataaagaaaactacctctttcagcacacttttgggttggacttttcttt 2536933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 266
Target Start/End: Original strand, 3676377 - 3676447
Alignment:
Q  196 tagttaattataaaataacacgtggattactaattcatgtcaataatcgtctccgttaaccctattttacc 266  Q
    |||| ||||||| |||||||||||||||| |||| ||| ||| |||||||| | ||||||||| |||||||    
T  3676377 tagtcaattatacaataacacgtggattagtaatccatatcactaatcgtccctgttaaccctcttttacc 3676447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 430
Target Start/End: Original strand, 3676872 - 3676910
Alignment:
Q  392 ccctcaatacaaccgacaaagattgccaagtattttcat 430  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  3676872 ccctcaatacaatcgacaaagattgccaagtattttcat 3676910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 17590117 - 17590075
Alignment:
Q  25 ctatgtataaagaaaactacccctttcagcacatttttgggtt 67  Q
    |||| |||||||||||||||| |||||||||||||||||||||    
T  17590117 ctatatataaagaaaactacctctttcagcacatttttgggtt 17590075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 357
Target Start/End: Complemental strand, 16316636 - 16316591
Alignment:
Q  312 tcatattacttttttatcagccgcttttatgttgtacatctgtgtt 357  Q
    |||| |||||||||||||||||| |||| |||||||||||||||||    
T  16316636 tcatgttacttttttatcagccgattttttgttgtacatctgtgtt 16316591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 392 - 429
Target Start/End: Complemental strand, 27901123 - 27901086
Alignment:
Q  392 ccctcaatacaaccgacaaagattgccaagtattttca 429  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  27901123 ccctcaatacaactgacaaagattgccaagtattttca 27901086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 427
Target Start/End: Complemental strand, 16316607 - 16316551
Alignment:
Q  372 tgttgtacatctgtatcgtt-ccctcaatacaaccgacaaagattgccaagtatttt 427  Q
    |||||||||||||| | ||| |||| ||||||||||||||||||||||| |||||||    
T  16316607 tgttgtacatctgtgttgtttcccttaatacaaccgacaaagattgccatgtatttt 16316551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 357
Target Start/End: Complemental strand, 32249884 - 32249848
Alignment:
Q  321 ttttttatcagccgcttttatgttgtacatctgtgtt 357  Q
    |||||||||||||| ||||||||||||||||||||||    
T  32249884 ttttttatcagccgattttatgttgtacatctgtgtt 32249848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 153 - 286
Target Start/End: Original strand, 1190358 - 1190492
Alignment:
Q  153 ggagaaaacttacacatagttacttatgagctgttcttactgttagttaattataaaataacacgtggattactaattcatgtcaataatcgtctccgtt 252  Q
    |||||||||||||||| |||| |||||||  |||||||||||||||  |||||||||||||||| || ||||||||| |||||||| ||||||| |||||    
T  1190358 ggagaaaacttacacacagttccttatgaattgttcttactgttagccaattataaaataacacatgaattactaatccatgtcaacaatcgtccccgtt 1190457  T
Q  253 aaccctattttacc-ccgtacccgcatatcaatct 286  Q
    |||||| ||||||| ||||| |  |||||||||||    
T  1190458 aaccctcttttacctccgtaactacatatcaatct 1190492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 312 - 436
Target Start/End: Original strand, 1190517 - 1190643
Alignment:
Q  312 tcatattacttttttatcagccgcttttatgttgtacatctgtgttt-ccctnnnnnnnnntgttgtacatctgtatcgttccc-tcaatacaaccgaca 409  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| |||          ||||||| |||||||| |||||| |||||||||||||||    
T  1190517 tcatattacttttttatcagccgcttttatgttgtacatatgtgttttcccaaaaaaaaaatgttgtatatctgtattgttcccctcaatacaaccgaca 1190616  T
Q  410 aagattgccaagtattttcatctctct 436  Q
    ||||||||||||||||||||| |||||    
T  1190617 aagattgccaagtattttcatatctct 1190643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 153 - 266
Target Start/End: Complemental strand, 28263939 - 28263826
Alignment:
Q  153 ggagaaaacttacacatagttacttatgagctgttcttactgttagttaattataaaataacacgtggattactaattcatgtcaataatcgtctccgtt 252  Q
    ||||||||||||| || | || ||||||| || |||||| ||||||  ||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  28263939 ggagaaaacttacgcacaattccttatgaactattcttagtgttagccaattataaaataacacgtggattactaattcatgtcactaatcgtccccgtt 28263840  T
Q  253 aaccctattttacc 266  Q
    ||| || |||||||    
T  28263839 aactctcttttacc 28263826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 1190217 - 1190271
Alignment:
Q  25 ctatgtataaagaaaactacccctttcagcacatttttgggttgaaattttcttt 79  Q
    |||||||||||||||||||||||||| |||||| |||||||||| ||||||||||    
T  1190217 ctatgtataaagaaaactaccccttttagcacacttttgggttggaattttcttt 1190271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 372 - 429
Target Start/End: Original strand, 28222159 - 28222217
Alignment:
Q  372 tgttgtacatctgtatcgttccc-tcaatacaaccgacaaagattgccaagtattttca 429  Q
    |||||||||||| ||| |||||| ||||||||||||||| |||||||||||||||||||    
T  28222159 tgttgtacatctatattgttcccctcaatacaaccgacatagattgccaagtattttca 28222217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 38938851 - 38938797
Alignment:
Q  25 ctatgtataaagaaaactacccctttcagcacatttttgggttgaaattttcttt 79  Q
    |||| |||||||||||||||||||||||||||| |||||||||| | ||||||||    
T  38938851 ctatatataaagaaaactacccctttcagcacacttttgggttggacttttcttt 38938797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 38938984 - 38938934
Alignment:
Q  30 tataaagaaaactacccctttcagcacatttttgggttgaaattttctttt 80  Q
    |||||||||||||||||||||||||||| |||||||||| | |||||||||    
T  38938984 tataaagaaaactacccctttcagcacacttttgggttggacttttctttt 38938934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 312 - 357
Target Start/End: Complemental strand, 38938614 - 38938569
Alignment:
Q  312 tcatattacttttttatcagccgcttttatgttgtacatctgtgtt 357  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||    
T  38938614 tcatgttacttttttatcagccggttttatgttgtacatctgtgtt 38938569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 24007268 - 24007316
Alignment:
Q  30 tataaagaaaactacccctttcagcacatttttgggttgaaattttctttt 80  Q
    ||||||||||||||||||||||||  ||||||||||||||| |||||||||    
T  24007268 tataaagaaaactacccctttcag--catttttgggttgaatttttctttt 24007316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 372 - 430
Target Start/End: Complemental strand, 38938585 - 38938526
Alignment:
Q  372 tgttgtacatctgtatcgtt-ccctcaatacaaccgacaaagattgccaagtattttcat 430  Q
    |||||||||||||| | ||| |||||||||||||| |||| |||||||||||||||||||    
T  38938585 tgttgtacatctgtgttgtttccctcaatacaacccacaacgattgccaagtattttcat 38938526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 3161039 - 3160993
Alignment:
Q  30 tataaagaaaactacccctttcagcacatttttgggttgaaattttc 76  Q
    |||||||||||||||||||| ||||||| |||||||||||| |||||    
T  3161039 tataaagaaaactaccccttccagcacacttttgggttgaacttttc 3160993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 38938705 - 38938655
Alignment:
Q  175 cttatgagctgttcttactgttagttaattataaaataacacgtggattac 225  Q
    ||||||| ||||||||||||||||  ||||||||||||||| |||||||||    
T  38938705 cttatgaactgttcttactgttagccaattataaaataacatgtggattac 38938655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 19514387 - 19514333
Alignment:
Q  24 tctatgtataaagaaaactacccctttcagcacatttttgggttgaaattttctttt 80  Q
    ||||| ||||||||||||||| ||||||||  ||||||||||||||| |||||||||    
T  19514387 tctatatataaagaaaactactcctttcag--catttttgggttgaatttttctttt 19514333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 320 - 357
Target Start/End: Complemental strand, 28263768 - 28263731
Alignment:
Q  320 cttttttatcagccgcttttatgttgtacatctgtgtt 357  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  28263768 cttttttatcagccgattttatgttgtacatctgtgtt 28263731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 312 - 352
Target Start/End: Original strand, 28222130 - 28222170
Alignment:
Q  312 tcatattacttttttatcagccgcttttatgttgtacatct 352  Q
    |||| |||||||||||||||||||||| |||||||||||||    
T  28222130 tcatgttacttttttatcagccgctttaatgttgtacatct 28222170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 39850657 - 39850709
Alignment:
Q  25 ctatgtataaagaaaactacccctttcagcacatttttgggttgaaattttcttt 79  Q
    |||| |||||||||||||||||||||||  |||||||||||||| | ||||||||    
T  39850657 ctatatataaagaaaactacccctttca--acatttttgggttggacttttcttt 39850709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 267
Target Start/End: Complemental strand, 3160854 - 3160808
Alignment:
Q  221 attactaattcatgtcaataatcgtctccgttaaccctattttaccc 267  Q
    |||| |||||||||||| ||||| |||||||||||||| ||||||||    
T  3160854 attaataattcatgtcactaatcatctccgttaaccctcttttaccc 3160808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 28221927 - 28221981
Alignment:
Q  25 ctatgtataaagaaaactacccctttcagcacatttttgggttgaaattttcttt 79  Q
    |||| |||||||||||||| | ||||||||||| |||||||||| | ||||||||    
T  28221927 ctatatataaagaaaactatctctttcagcacacttttgggttggacttttcttt 28221981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 38939112 - 38939058
Alignment:
Q  25 ctatgtataaagaaaactacccctttcagcacatttttgggttgaaattttcttt 79  Q
    |||| ||||||||||||||||||||||| |||| |||||| ||| | ||||||||    
T  38939112 ctatatataaagaaaactacccctttcaacacacttttggattggacttttcttt 38939058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 266
Target Start/End: Complemental strand, 3160926 - 3160861
Alignment:
Q  201 aattataaaataacacgtggattactaattcatgtcaataatcgtctccgttaaccctattttacc 266  Q
    ||||||||||||||| ||| |||| |||| ||| ||| |||||  ||||||||||||| |||||||    
T  3160926 aattataaaataacatgtgaattagtaatccatatcactaatcagctccgttaaccctcttttacc 3160861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 153 - 266
Target Start/End: Complemental strand, 11321394 - 11321281
Alignment:
Q  153 ggagaaaacttacacatagttacttatgagctgttcttactgttagttaattataaaataacacgtggattactaattcatgtcaataatcgtctccgtt 252  Q
    |||||||||||||||| |||| ||||| | ||||||||||||||||  |||||||||||||||| || ||||||||||||||||| |||||||| || ||    
T  11321394 ggagaaaacttacacacagtttcttattaactgttcttactgttagccaattataaaataacacatgaattactaattcatgtcactaatcgtccccatt 11321295  T
Q  253 aaccctattttacc 266  Q
    |||||| |||||||    
T  11321294 aaccctcttttacc 11321281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 153 - 283
Target Start/End: Original strand, 9306598 - 9306729
Alignment:
Q  153 ggagaaaacttacacatagttacttatgagctgttcttactgttagttaattataaaataacacgtggattactaattcatgtcaataatcgtctccgtt 252  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||| || |||||||||||| ||||||||| |||| ||||| | ||||||||   |||    
T  9306598 ggagaaaacttacacatagttccttatgaactgttcttactgttagctagttataaaataactcgtggattaataatccatgtaactaatcgtcattgtt 9306697  T
Q  253 aaccctattttacc-ccgtacccgcatatcaa 283  Q
    |||||| ||||||| ||||| || ||||||||    
T  9306698 aaccctcttttaccaccgtaaccacatatcaa 9306729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 153 - 283
Target Start/End: Original strand, 9302160 - 9302291
Alignment:
Q  153 ggagaaaacttacacatagttacttatgagctgttcttactgttagttaattataaaataacacgtggattactaattcatgtcaataatcgtctccgtt 252  Q
    ||||||||||||||||||||| ||||||| |||||||||| ||||| || |||||||||||| ||||||||| |||| ||||| | ||||||||   |||    
T  9302160 ggagaaaacttacacatagttccttatgaactgttcttacagttagctagttataaaataactcgtggattaataatccatgtaactaatcgtcattgtt 9302259  T
Q  253 aaccctattttacc-ccgtacccgcatatcaa 283  Q
    |||||| ||||||| ||||| || ||||||||    
T  9302260 aaccctcttttaccaccgtaaccacatatcaa 9302291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 317 - 430
Target Start/End: Complemental strand, 11321228 - 11321113
Alignment:
Q  317 ttacttttttatcagccgcttttatgttgtacatctgtgtttccctnnnnnnnnnt-gttgtacatctgtatcgttccc-tcaatacaaccgacaaagat 414  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||         | ||||||||||||| | |||||| ||||||||||||||||||||    
T  11321228 ttacttttttataagccacttttatgttgtacatctgtgtttccctaaaaaaaaattgttgtacatctgtgttgttcccctcaatacaaccgacaaagat 11321129  T
Q  415 tgccaagtattttcat 430  Q
    ||||||||||||||||    
T  11321128 tgccaagtattttcat 11321113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 154 - 255
Target Start/End: Complemental strand, 20621370 - 20621269
Alignment:
Q  154 gagaaaacttacacatagttacttatgagctgttcttactgttagttaattataaaataacacgtggattactaattcatgtcaataatcgtctccgtta 253  Q
    ||||||||||||||| | || |||||||  |||||||||| ||||  ||||||||||||||| || |||||||||| ||||||| |||||||| ||||||    
T  20621370 gagaaaacttacacacaattccttatgaattgttcttactattaggcaattataaaataacaagtagattactaatccatgtcactaatcgtccccgtta 20621271  T
Q  254 ac 255  Q
    ||    
T  20621270 ac 20621269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 175 - 258
Target Start/End: Original strand, 35492157 - 35492240
Alignment:
Q  175 cttatgagctgttcttactgttagttaattataaaataacacgtggattactaattcatgtcaataatcgtctccgttaaccct 258  Q
    ||||||| ||||||||||| ||||  ||||||||||||||| ||||||||||||||||||||| ||||| ||  ||||||||||    
T  35492157 cttatgaactgttcttactattagccaattataaaataacatgtggattactaattcatgtcactaatcatcctcgttaaccct 35492240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 155 - 266
Target Start/End: Original strand, 47220959 - 47221070
Alignment:
Q  155 agaaaacttacacatagttacttatgagctgttcttactgttagttaattataaaataacacgtggattactaattcatgtcaataatcgtctccgttaa 254  Q
    |||||||| ||||| | || |||||||  |||||||||||||||  | ||||||||||||||||| ||||||||||||||||| |||| ||| | | |||    
T  47220959 agaaaactcacacacaattccttatgaattgttcttactgttagccagttataaaataacacgtgaattactaattcatgtcactaattgtcccagctaa 47221058  T
Q  255 ccctattttacc 266  Q
    |||| |||||||    
T  47221059 ccctcttttacc 47221070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 372 - 429
Target Start/End: Original strand, 39677991 - 39678049
Alignment:
Q  372 tgttgtacatctgtatcgttccc-tcaatacaaccgacaaagattgccaagtattttca 429  Q
    |||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||    
T  39677991 tgttgtacatctgtattgttcccctcaatacaaccgacaaagattgtcaagtattttca 39678049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 201 - 266
Target Start/End: Complemental strand, 41755504 - 41755439
Alignment:
Q  201 aattataaaataacacgtggattactaattcatgtcaataatcgtctccgttaaccctattttacc 266  Q
    |||| |||||||||| |||||||||||||||||||||  ||||||| ||||||||||| |||||||    
T  41755504 aattgtaaaataacatgtggattactaattcatgtcaccaatcgtccccgttaaccctcttttacc 41755439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 312 - 421
Target Start/End: Original strand, 9302322 - 9302432
Alignment:
Q  312 tcatattacttttttatcagccgcttttatgttgtacatctgtgtttccctnnnnnnnnntgttgtacatctgtatcgtt-ccctcaatacaaccgacaa 410  Q
    |||| ||||||||||||||||||||||||||||||||||  |||| | |||           |||||||||||| | ||| |||||||||||||||||||    
T  9302322 tcatgttacttttttatcagccgcttttatgttgtacattagtgtgttcctcaaaaaaacaattgtacatctgtgttgttgccctcaatacaaccgacaa 9302421  T
Q  411 agattgccaag 421  Q
    |||||||||||    
T  9302422 agattgccaag 9302432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 9302026 - 9302076
Alignment:
Q  30 tataaagaaaactacccctttcagcacatttttgggttgaaattttctttt 80  Q
    |||||||||||||||||||||||||||| |||||||||| | |||||||||    
T  9302026 tataaagaaaactacccctttcagcacacttttgggttggacttttctttt 9302076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 9306464 - 9306514
Alignment:
Q  30 tataaagaaaactacccctttcagcacatttttgggttgaaattttctttt 80  Q
    |||||||||||||||||||||||||||| |||||||||| | |||||||||    
T  9306464 tataaagaaaactacccctttcagcacacttttgggttggacttttctttt 9306514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 11321529 - 11321475
Alignment:
Q  25 ctatgtataaagaaaactacccctttcagcacatttttgggttgaaattttcttt 79  Q
    |||| |||||||||||||||||||||||||||| |||||||||| | ||||||||    
T  11321529 ctatatataaagaaaactacccctttcagcacacttttgggttggacttttcttt 11321475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 312 - 419
Target Start/End: Original strand, 9306760 - 9306868
Alignment:
Q  312 tcatattacttttttatcagccgcttttatgttgtacatctgtgtttccctnnnnnnnnntgttgtacatctgtatcgtt-ccctcaatacaaccgacaa 410  Q
    |||| ||||||||||||||||||||||||||||||||||  |||| | |||           |||||||||||| | ||| |||||||||||||||||||    
T  9306760 tcatgttacttttttatcagccgcttttatgttgtacattagtgtgttcctcaaaaaaacaattgtacatctgtgttgttgccctcaatacaaccgacaa 9306859  T
Q  411 agattgcca 419  Q
    |||||||||    
T  9306860 agattgcca 9306868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 184 - 265
Target Start/End: Original strand, 47912086 - 47912167
Alignment:
Q  184 tgttcttactgttagttaattataaaataacacgtggattactaattcatgtcaataatcgtctccgttaaccctattttac 265  Q
    |||||||| ||| ||  ||||| ||||||||| ||||||||||||| || |||| |||| ||||| ||||||||||||||||    
T  47912086 tgttcttattgtcagccaattaaaaaataacatgtggattactaatccaagtcactaattgtctctgttaaccctattttac 47912167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 372 - 430
Target Start/End: Complemental strand, 20621179 - 20621120
Alignment:
Q  372 tgttgtacatctgtatcgttc-cctcaatacaaccgacaaagattgccaagtattttcat 430  Q
    |||||||||||||| | |||| ||||||||||||| |||||||||||||| |||||||||    
T  20621179 tgttgtacatctgtgttgttcgcctcaatacaacccacaaagattgccaaatattttcat 20621120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 430
Target Start/End: Original strand, 47912301 - 47912339
Alignment:
Q  392 ccctcaatacaaccgacaaagattgccaagtattttcat 430  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  47912301 ccctaaatacaaccgacaaagattgccaagtattttcat 47912339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 153 - 266
Target Start/End: Complemental strand, 9307842 - 9307731
Alignment:
Q  153 ggagaaaacttacacatagttacttatgagctgttcttactgttagttaattataaaataacacgtggattactaattcatgtcaataatcgtctccgtt 252  Q
    |||||||| ||| ||| | || ||||||| || |||||| ||||||  |||| ||||||| |||||| ||||||||| ||||||| || ||||| |||||    
T  9307842 ggagaaaatttatacacaattccttatgaactattcttattgttagccaatt-taaaatagcacgtgcattactaatccatgtcacta-tcgtccccgtt 9307745  T
Q  253 aaccctattttacc 266  Q
    |||||| |||||||    
T  9307744 aaccctcttttacc 9307731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 357
Target Start/End: Original strand, 9329810 - 9329855
Alignment:
Q  312 tcatattacttttttatcagccgcttttatgttgtacatctgtgtt 357  Q
    |||| |||||||||||||||||| ||||||||||||||| ||||||    
T  9329810 tcatgttacttttttatcagccgtttttatgttgtacatttgtgtt 9329855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 357
Target Start/End: Complemental strand, 20621203 - 20621163
Alignment:
Q  317 ttacttttttatcagccgcttttatgttgtacatctgtgtt 357  Q
    |||| ||||||||||||| ||||||||||||||||||||||    
T  20621203 ttacctttttatcagccgattttatgttgtacatctgtgtt 20621163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 354
Target Start/End: Original strand, 39677972 - 39678004
Alignment:
Q  322 tttttatcagccgcttttatgttgtacatctgt 354  Q
    |||||||||||||||||||||||||||||||||    
T  39677972 tttttatcagccgcttttatgttgtacatctgt 39678004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 68
Target Start/End: Complemental strand, 25801770 - 25801727
Alignment:
Q  25 ctatgtataaagaaaactacccctttcagcacatttttgggttg 68  Q
    |||| |||||||||||||||||||||||||||| ||||| ||||    
T  25801770 ctatatataaagaaaactacccctttcagcacacttttgcgttg 25801727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 430
Target Start/End: Original strand, 35492326 - 35492385
Alignment:
Q  372 tgttgtacatctgtatcgttccct-caatacaaccgacaaagattgccaagtattttcat 430  Q
    |||||||||| ||| | ||||||| ||||||||||||||||||||||||| || ||||||    
T  35492326 tgttgtacatttgtgttgttcccttcaatacaaccgacaaagattgccaaataatttcat 35492385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 430
Target Start/End: Complemental strand, 9303195 - 9303157
Alignment:
Q  392 ccctcaatacaaccgacaaagattgccaagtattttcat 430  Q
    |||||||||||||||| |||||||| |||||||||||||    
T  9303195 ccctcaatacaaccgataaagattggcaagtattttcat 9303157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 9329609 - 9329663
Alignment:
Q  25 ctatgtataaagaaaactacccctttcagcacatttttgggttgaaattttcttt 79  Q
    |||| ||||||||||||||||| ||||| |||| |||||||||| | ||||||||    
T  9329609 ctatatataaagaaaactacccttttcaacacacttttgggttggatttttcttt 9329663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 39675470 - 39675520
Alignment:
Q  30 tataaagaaaactacccctttcagcacatttttgggttgaaattttctttt 80  Q
    ||||||| |||||| | |||||||||||||||| ||||||| |||||||||    
T  39675470 tataaaggaaactatctctttcagcacatttttaggttgaatttttctttt 39675520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 45022709 - 45022655
Alignment:
Q  25 ctatgtataaagaaaactacccctttcagcacatttttgggttgaaattttcttt 79  Q
    |||| |||||||||||||| ||||||||||||| ||| || ||||| ||||||||    
T  45022709 ctatatataaagaaaactatccctttcagcacactttaggattgaacttttcttt 45022655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 353
Target Start/End: Complemental strand, 9303245 - 9303204
Alignment:
Q  312 tcatattacttttttatcagccgcttttatgttgtacatctg 353  Q
    |||| |||||||||||| ||||| ||||||||||||||||||    
T  9303245 tcatgttacttttttattagccgattttatgttgtacatctg 9303204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 353
Target Start/End: Complemental strand, 9307683 - 9307642
Alignment:
Q  312 tcatattacttttttatcagccgcttttatgttgtacatctg 353  Q
    |||| |||||||||||| ||||| ||||||||||||||||||    
T  9307683 tcatgttacttttttattagccgattttatgttgtacatctg 9307642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 266
Target Start/End: Original strand, 9329697 - 9329762
Alignment:
Q  201 aattataaaataacacgtggattactaattcatgtcaataatcgtctccgttaaccctattttacc 266  Q
    ||||||||||||||| |||||||| |||| ||||||| ||||| |||| ||||  ||| |||||||    
T  9329697 aattataaaataacatgtggattagtaatccatgtcattaatcatctctgttagacctcttttacc 9329762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 357
Target Start/End: Original strand, 35492297 - 35492342
Alignment:
Q  312 tcatattacttttttatcagccgcttttatgttgtacatctgtgtt 357  Q
    |||| |||||||||||||||||| |||| |||||||||| ||||||    
T  35492297 tcatgttacttttttatcagccgattttgtgttgtacatttgtgtt 35492342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 357
Target Start/End: Original strand, 47221119 - 47221164
Alignment:
Q  312 tcatattacttttttatcagccgcttttatgttgtacatctgtgtt 357  Q
    |||| ||||||||| |||||||  ||||||||||||||||||||||    
T  47221119 tcatgttactttttaatcagccaattttatgttgtacatctgtgtt 47221164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 390 - 430
Target Start/End: Original strand, 9329858 - 9329898
Alignment:
Q  390 ttccctcaatacaaccgacaaagattgccaagtattttcat 430  Q
    |||||||||||||||||| |||||||||||| ||| |||||    
T  9329858 ttccctcaatacaaccgataaagattgccaaatatattcat 9329898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 153 - 266
Target Start/End: Original strand, 35369035 - 35369148
Alignment:
Q  153 ggagaaaacttacacatagttacttatgagctgttcttactgttagttaattataaaataacacgtggattactaattcatgtcaataatcgtctccgtt 252  Q
    |||||||||||||||| |||| ||||||| ||||||||||||||||  |||||||||||||||| |||||||||||| ||||||| |||||||| || ||    
T  35369035 ggagaaaacttacacacagttccttatgaactgttcttactgttagccaattataaaataacacatggattactaatccatgtcactaatcgtccccatt 35369134  T
Q  253 aaccctattttacc 266  Q
    |||| | |||||||    
T  35369135 aaccatcttttacc 35369148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 153 - 266
Target Start/End: Complemental strand, 3422746 - 3422633
Alignment:
Q  153 ggagaaaacttacacatagttacttatgagctgttcttactgttagttaattataaaataacacgtggattactaattcatgtcaataatcgtctccgtt 252  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||| ||||| |||||||| |||| ||||||  |||||||  |||||    
T  3422746 ggagaaaacttacacatagttccttatgaactgttcttactgttagtcaattataaagtaacatgtggattattaatccatgtctttaatcgtacccgtt 3422647  T
Q  253 aaccctattttacc 266  Q
    | |||| |||||||    
T  3422646 atccctcttttacc 3422633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 153 - 266
Target Start/End: Original strand, 22101886 - 22101999
Alignment:
Q  153 ggagaaaacttacacatagttacttatgagctgttcttactgttagttaattataaaataacacgtggattactaattcatgtcaataatcgtctccgtt 252  Q
    ||||||||||||||||  ||| ||||||| ||||||||||||||||   ||||||||||||||| |||||||||||| ||||||| |||||||| || ||    
T  22101886 ggagaaaacttacacacggtttcttatgaactgttcttactgttagcctattataaaataacacatggattactaatccatgtcactaatcgtccccatt 22101985  T
Q  253 aaccctattttacc 266  Q
    |||||| |||||||    
T  22101986 aaccctcttttacc 22101999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 153 - 266
Target Start/End: Original strand, 22176833 - 22176946
Alignment:
Q  153 ggagaaaacttacacatagttacttatgagctgttcttactgttagttaattataaaataacacgtggattactaattcatgtcaataatcgtctccgtt 252  Q
    |||||||||||||||| ||||  |||||| ||||||||||||||||   ||||||||||||||| |||||||||||| ||||||| |||||||| || ||    
T  22176833 ggagaaaacttacacacagttttttatgaactgttcttactgttagcctattataaaataacacatggattactaatccatgtcactaatcgtccccatt 22176932  T
Q  253 aaccctattttacc 266  Q
    |||||| |||||||    
T  22176933 aacccttttttacc 22176946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 155 - 266
Target Start/End: Original strand, 34492032 - 34492143
Alignment:
Q  155 agaaaacttacacatagttacttatgagctgttcttactgttagttaattataaaataacacgtggattactaattcatgtcaataatcgtctccgttaa 254  Q
    |||||||||| ||||||||  ||| || |||||||||||||| | |||||||||||||||||||| ||||||||| ||||||| |||| || ||||||||    
T  34492032 agaaaacttatacatagttctttaagaactgttcttactgttggctaattataaaataacacgtgaattactaatccatgtcactaatagtttccgttaa 34492131  T
Q  255 ccctattttacc 266  Q
    | || |||||||    
T  34492132 ctctcttttacc 34492143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 153 - 266
Target Start/End: Complemental strand, 7116088 - 7115975
Alignment:
Q  153 ggagaaaacttacacatagttacttatgagctgttcttactgttagttaattataaaataacacgtggattactaattcatgtcaataatcgtctccgtt 252  Q
    |||||||||||||||| | || ||||||| ||||||||||||||||  ||||||||||||||||||| ||||||| | ||||| | |||| ||| |||||    
T  7116088 ggagaaaacttacacacaattccttatgaactgttcttactgttagcaaattataaaataacacgtgtattactagtccatgttactaattgtccccgtt 7115989  T
Q  253 aaccctattttacc 266  Q
    || ||| |||||||    
T  7115988 aatcctcttttacc 7115975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 153 - 265
Target Start/End: Original strand, 44822178 - 44822290
Alignment:
Q  153 ggagaaaacttacacatagttacttatgagctgttcttactgttagttaattataaaataacacgtggattactaattcatgtcaataatcgtctccgtt 252  Q
    |||||||||||||||| |  |  ||||||  |||||||| ||||||  |||||||||| ||||| |||||||||||||||||||| |||||||| |||||    
T  44822178 ggagaaaacttacacacaactctttatgaattgttcttattgttagccaattataaaacaacacatggattactaattcatgtcactaatcgtccccgtt 44822277  T
Q  253 aaccctattttac 265  Q
    |||||| ||||||    
T  44822278 aaccctcttttac 44822290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 158 - 245
Target Start/End: Original strand, 22833257 - 22833344
Alignment:
Q  158 aaacttacacatagttacttatgagctgttcttactgttagttaattataaaataacacgtggattactaattcatgtcaataatcgt 245  Q
    ||||||||| |  ||| ||||||| || |||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||    
T  22833257 aaacttacatacggttccttatgaactattcttactgttagtcaattataaaataacacgtggattactaatccatgtcactaatcgt 22833344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 201 - 256
Target Start/End: Complemental strand, 35863749 - 35863694
Alignment:
Q  201 aattataaaataacacgtggattactaattcatgtcaataatcgtctccgttaacc 256  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||    
T  35863749 aattataaaataacacgtggattactaatccatgtcactaatcgtccccgttaacc 35863694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 51139844 - 51139785
Alignment:
Q  21 atatctatgtataaagaaaactacccctttcagcacatttttgggttgaaattttctttt 80  Q
    |||| ||| |||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  51139844 atatatatatataaagaaaactacccctttcagcacacttttgggttgaacttttctttt 51139785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 312 - 358
Target Start/End: Original strand, 26053764 - 26053810
Alignment:
Q  312 tcatattacttttttatcagccgcttttatgttgtacatctgtgttt 358  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||    
T  26053764 tcatgttacttttttatcagccgcttttatgttgtacatctgtgttt 26053810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 184 - 263
Target Start/End: Original strand, 28096278 - 28096357
Alignment:
Q  184 tgttcttactgttagttaattataaaataacacgtggattactaattcatgtcaataatcgtctccgttaaccctatttt 263  Q
    |||||||| ||||||  ||||||||||||||| || |||||||||| ||||||| ||||||||  |||||||||| ||||    
T  28096278 tgttcttagtgttagccaattataaaataacatgttgattactaatccatgtcactaatcgtcctcgttaaccctctttt 28096357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 312 - 362
Target Start/End: Original strand, 35369197 - 35369247
Alignment:
Q  312 tcatattacttttttatcagccgcttttatgttgtacatctgtgtttccct 362  Q
    |||| |||||||||||||||||| ||||||||||||||| |||||||||||    
T  35369197 tcatgttacttttttatcagccgtttttatgttgtacatatgtgtttccct 35369247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 184 - 266
Target Start/End: Original strand, 53359479 - 53359561
Alignment:
Q  184 tgttcttactgttagttaattataaaataacacgtggattactaattcatgtcaataatcgtctccgttaaccctattttacc 266  Q
    ||||||||| ||| |  |||||||||||| |||||| |||| |||||||||||| ||||| || ||||||||||| |||||||    
T  53359479 tgttcttacagttggccaattataaaatagcacgtgaattattaattcatgtcactaatcatccccgttaaccctcttttacc 53359561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 312 - 357
Target Start/End: Complemental strand, 7115925 - 7115880
Alignment:
Q  312 tcatattacttttttatcagccgcttttatgttgtacatctgtgtt 357  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||    
T  7115925 tcatgttacttttttatcagccgattttatgttgtacatctgtgtt 7115880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 312 - 357
Target Start/End: Original strand, 22176996 - 22177041
Alignment:
Q  312 tcatattacttttttatcagccgcttttatgttgtacatctgtgtt 357  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||    
T  22176996 tcatgttacttttttatcagccgcttttatgttgtacatttgtgtt 22177041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 372 - 430
Target Start/End: Complemental strand, 3422523 - 3422464
Alignment:
Q  372 tgttgtacatctgtatcgttccc-tcaatacaaccgacaaagattgccaagtattttcat 430  Q
    |||||||||||||| | |||||| ||||||  ||||||||||||||||||||||||||||    
T  3422523 tgttgtacatctgtgttgttcccctcaataataccgacaaagattgccaagtattttcat 3422464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 3424638 - 3424579
Alignment:
Q  21 atatctatgtataaagaaaactacccctttcagcacatttttgggttgaaattttctttt 80  Q
    |||||||| ||| ||||||||||||||||| |||||| |||||||||| | |||||||||    
T  3424638 atatctatatatgaagaaaactaccccttttagcacacttttgggttggacttttctttt 3424579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 22176407 - 22176454
Alignment:
Q  33 aaagaaaactacccctttcagcacatttttgggttgaaattttctttt 80  Q
    ||||||||||||||||||||||| | |||||||||||| |||||||||    
T  22176407 aaagaaaactacccctttcagcagacttttgggttgaacttttctttt 22176454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 28096104 - 28096155
Alignment:
Q  25 ctatgtataaagaaaactacccctttcagcacatttttgggttgaaattttc 76  Q
    |||| |||||||||||||| ||||||||||||| |||||||||||| |||||    
T  28096104 ctatatataaagaaaactatccctttcagcacacttttgggttgaacttttc 28096155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 7116225 - 7116183
Alignment:
Q  25 ctatgtataaagaaaactacccctttcagcacatttttgggtt 67  Q
    |||| |||||||||||||||||||||||||||| |||||||||    
T  7116225 ctatatataaagaaaactacccctttcagcacacttttgggtt 7116183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 258
Target Start/End: Complemental strand, 7116643 - 7116577
Alignment:
Q  192 ctgttagttaattataaaataacacgtggattactaattcatgtcaataatcgtctccgttaaccct 258  Q
    |||||||| ||||||||||||||||||| |||| | |||||||||| |||| ||| | |||||||||    
T  7116643 ctgttagtcaattataaaataacacgtgaattaatgattcatgtcactaattgtcccggttaaccct 7116577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 255
Target Start/End: Original strand, 22101543 - 22101597
Alignment:
Q  201 aattataaaataacacgtggattactaattcatgtcaataatcgtctccgttaac 255  Q
    |||||||||||||||||||||||| |||| ||||||| ||||||||  |||||||    
T  22101543 aattataaaataacacgtggattagtaatccatgtcactaatcgtcaacgttaac 22101597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 255
Target Start/End: Original strand, 22176488 - 22176542
Alignment:
Q  201 aattataaaataacacgtggattactaattcatgtcaataatcgtctccgttaac 255  Q
    |||||||||||||||||||||||| |||| ||||||| ||||||||  |||||||    
T  22176488 aattataaaataacacgtggattagtaatccatgtcactaatcgtccacgttaac 22176542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 430
Target Start/End: Original strand, 26057520 - 26057558
Alignment:
Q  392 ccctcaatacaaccgacaaagattgccaagtattttcat 430  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  26057520 ccctcaatacaaccgacaaagattgccaactattttcat 26057558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 42897114 - 42897060
Alignment:
Q  25 ctatgtataaagaaaactacccctttcagcacatttttgggttgaaattttcttt 79  Q
    |||| |||||||||||||||||||||||||||| ||||| |||| | ||||||||    
T  42897114 ctatatataaagaaaactacccctttcagcacacttttgtgttggatttttcttt 42897060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 430
Target Start/End: Original strand, 44822391 - 44822429
Alignment:
Q  392 ccctcaatacaaccgacaaagattgccaagtattttcat 430  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  44822391 ccctcaatacaaccgacaaacattgccaagtattttcat 44822429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 357
Target Start/End: Complemental strand, 3422584 - 3422539
Alignment:
Q  312 tcatattacttttttatcagccgcttttatgttgtacatctgtgtt 357  Q
    |||| ||||||||||||||||| |||||| ||||||||||||||||    
T  3422584 tcatgttacttttttatcagccacttttacgttgtacatctgtgtt 3422539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 392 - 429
Target Start/End: Complemental strand, 35863586 - 35863549
Alignment:
Q  392 ccctcaatacaaccgacaaagattgccaagtattttca 429  Q
    |||||| |||||||||||||||||||||||||||||||    
T  35863586 ccctcattacaaccgacaaagattgccaagtattttca 35863549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 22101462 - 22101509
Alignment:
Q  33 aaagaaaactacccctttcagcacatttttgggttgaaattttctttt 80  Q
    ||||||||||| ||||||||||| | |||||||||||| |||||||||    
T  22101462 aaagaaaactagccctttcagcagacttttgggttgaacttttctttt 22101509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 3422889 - 3422835
Alignment:
Q  25 ctatgtataaagaaaactacccctttcagcacatttttgggttgaaattttcttt 79  Q
    |||| |||||||||||||  ||||||||||||| |||||||||| | ||||||||    
T  3422889 ctatatataaagaaaactgtccctttcagcacacttttgggttggacttttcttt 3422835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 430
Target Start/End: Original strand, 22176593 - 22176631
Alignment:
Q  392 ccctcaatacaaccgacaaagattgccaagtattttcat 430  Q
    |||||||||||||||||||||||||| |||||| |||||    
T  22176593 ccctcaatacaaccgacaaagattgctaagtatattcat 22176631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 430
Target Start/End: Original strand, 34492273 - 34492311
Alignment:
Q  392 ccctcaatacaaccgacaaagattgccaagtattttcat 430  Q
    |||||||||||||||| |||||||| |||||||||||||    
T  34492273 ccctcaatacaaccgataaagattgtcaagtattttcat 34492311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 357
Target Start/End: Original strand, 22102049 - 22102093
Alignment:
Q  312 tcatattacttttttatcagccgcttttatgttgtacatctgtgtt 357  Q
    |||| ||||||||||||||||||| |||||||||||||| ||||||    
T  22102049 tcatgttacttttttatcagccgc-tttatgttgtacatttgtgtt 22102093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 357
Target Start/End: Original strand, 44822341 - 44822386
Alignment:
Q  312 tcatattacttttttatcagccgcttttatgttgtacatctgtgtt 357  Q
    |||| |||||||||||||||||| |||| ||||||| |||||||||    
T  44822341 tcatgttacttttttatcagccgattttttgttgtagatctgtgtt 44822386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 51139687 - 51139646
Alignment:
Q  175 cttatgagctgttcttactgttagttaattataaaataacac 216  Q
    ||||||| ||||||||||||||||  ||||||||||||||||    
T  51139687 cttatgaactgttcttactgttagccaattataaaataacac 51139646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 18461614 - 18461569
Alignment:
Q  33 aaagaaaactacccctttcagcacatttttgggttgaaattttctttt 80  Q
    ||||||||||||| ||||||||||  |||||||||||| |||||||||    
T  18461614 aaagaaaactacctctttcagcac--ttttgggttgaatttttctttt 18461569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 435
Target Start/End: Original strand, 22102077 - 22102141
Alignment:
Q  372 tgttgtacatctgtatcgttccc-tcaatacaaccgacaaagattgccaagtattttcatctctc 435  Q
    |||||||||| ||| | |||||| || | ||||||||||||||||| ||||||||||||| ||||    
T  22102077 tgttgtacatttgtgttgttcccctcgacacaaccgacaaagattgtcaagtattttcatatctc 22102141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 8e-28; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 153 - 256
Target Start/End: Original strand, 7061820 - 7061923
Alignment:
Q  153 ggagaaaacttacacatagttacttatgagctgttcttactgttagttaattataaaataacacgtggattactaattcatgtcaataatcgtctccgtt 252  Q
    |||||||||||||||| | || ||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||| ||| ||||||||  ||||    
T  7061820 ggagaaaacttacacacaatttcttatgaactgttcttactgttagtcaattataaaataacacatggattactaattcatatcactaatcgtcctcgtt 7061919  T
Q  253 aacc 256  Q
    ||||    
T  7061920 aacc 7061923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 153 - 254
Target Start/End: Original strand, 309805 - 309906
Alignment:
Q  153 ggagaaaacttacacatagttacttatgagctgttcttactgttagttaattataaaataacacgtggattactaattcatgtcaataatcgtctccgtt 252  Q
    |||||||||||||||| | || ||||||| ||||||||||||||||  ||||||||||||||| ||||||||||||| ||||||| |||||||| |||||    
T  309805 ggagaaaacttacacagaattccttatgaactgttcttactgttagccaattataaaataacatgtggattactaatccatgtcactaatcgtccccgtt 309904  T
Q  253 aa 254  Q
    ||    
T  309905 aa 309906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 153 - 266
Target Start/End: Original strand, 13594472 - 13594585
Alignment:
Q  153 ggagaaaacttacacatagttacttatgagctgttcttactgttagttaattataaaataacacgtggattactaattcatgtcaataatcgtctccgtt 252  Q
    |||||||||||||||  | || |||||||  ||||||||||||||| |||||||||||||||| ||||||||||||| ||||| | ||||||||||| ||    
T  13594472 ggagaaaacttacacgcaattccttatgaattgttcttactgttagctaattataaaataacatgtggattactaatccatgtaactaatcgtctccatt 13594571  T
Q  253 aaccctattttacc 266  Q
    |||||| |||||||    
T  13594572 aaccctcttttacc 13594585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 153 - 266
Target Start/End: Complemental strand, 35193554 - 35193441
Alignment:
Q  153 ggagaaaacttacacatagttacttatgagctgttcttactgttagttaattataaaataacacgtggattactaattcatgtcaataatcgtctccgtt 252  Q
    ||||||||| |||||| | ||  ||||||  |||||||||||||||| ||||||||||||||| ||||||||||||| ||||||| |||||||| |||||    
T  35193554 ggagaaaacctacacacaattctttatgaattgttcttactgttagtcaattataaaataacatgtggattactaatccatgtcactaatcgtccccgtt 35193455  T
Q  253 aaccctattttacc 266  Q
    |||||| |||||||    
T  35193454 aaccctcttttacc 35193441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 372 - 430
Target Start/End: Complemental strand, 35193341 - 35193283
Alignment:
Q  372 tgttgtacatctgtatcgttccctcaatacaaccgacaaagattgccaagtattttcat 430  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  35193341 tgttgtacatctgtgttgttccctcaatacaaccgacaaagattgccaagtattttcat 35193283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 157 - 266
Target Start/End: Original strand, 43528401 - 43528510
Alignment:
Q  157 aaaacttacacatagttacttatgagctgttcttactgttagttaattataaaataacacgtggattactaattcatgtcaataatcgtctccgttaacc 256  Q
    |||||||||||| | || | ||||| ||||| ||| ||| | | ||||||||||||||| ||| ||||||||| ||||||| ||||||||||||||||||    
T  43528401 aaaacttacacacaattccctatgaactgtttttattgtcaatcaattataaaataacatgtgaattactaatccatgtcactaatcgtctccgttaacc 43528500  T
Q  257 ctattttacc 266  Q
    || |||||||    
T  43528501 ctcttttacc 43528510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 153 - 266
Target Start/End: Complemental strand, 44539645 - 44539532
Alignment:
Q  153 ggagaaaacttacacatagttacttatgagctgttcttactgttagttaattataaaataacacgtggattactaattcatgtcaataatcgtctccgtt 252  Q
    |||||||| |||| || | || |||||||  |||||||||| ||||  ||||||||||||||||||||||||||||||||||||| |||| ||| | |||    
T  44539645 ggagaaaatttacgcacaattccttatgaattgttcttactattagccaattataaaataacacgtggattactaattcatgtcattaattgtcacagtt 44539546  T
Q  253 aaccctattttacc 266  Q
    |||| | |||||||    
T  44539545 aaccttcttttacc 44539532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 372 - 430
Target Start/End: Original strand, 309997 - 310056
Alignment:
Q  372 tgttgtacatctgtatcgttccc-tcaatacaaccgacaaagattgccaagtattttcat 430  Q
    |||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||    
T  309997 tgttgtacatctgtgttgttcccctcaatacaaccgacaaagattgccaagtattttcat 310056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 372 - 430
Target Start/End: Original strand, 7062011 - 7062070
Alignment:
Q  372 tgttgtacatctgtatcgttccc-tcaatacaaccgacaaagattgccaagtattttcat 430  Q
    |||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||    
T  7062011 tgttgtacatctgtgttgttcccctcaatacaaccgacaaagattgccaagtattttcat 7062070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 157 - 265
Target Start/End: Original strand, 27339463 - 27339563
Alignment:
Q  157 aaaacttacacatagttacttatgagctgttcttactgttagttaattataaaataacacgtggattactaattcatgtcaataatcgtctccgttaacc 256  Q
    |||||||||||| |||| |||||||  |||||||||||||||  |||||||        |||||||||||||||||||||| |||||||||| |||||||    
T  27339463 aaaacttacacacagttccttatgaattgttcttactgttagccaattata--------cgtggattactaattcatgtcactaatcgtctctgttaacc 27339554  T
Q  257 ctattttac 265  Q
    | |||||||    
T  27339555 ccattttac 27339563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 373 - 430
Target Start/End: Original strand, 13594664 - 13594722
Alignment:
Q  373 gttgtacatctgtatcgttccc-tcaatacaaccgacaaagattgccaagtattttcat 430  Q
    ||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||    
T  13594664 gttgtacatctgtgttgttcccctcaatacaaccgacaaagattgccaagtattttcat 13594722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 153 - 246
Target Start/End: Complemental strand, 25048056 - 25047963
Alignment:
Q  153 ggagaaaacttacacatagttacttatgagctgttcttactgttagttaattataaaataacacgtggattactaattcatgtcaataatcgtc 246  Q
    |||||||| ||||||| | || |||||||  |||||||| ||||||  |||||||||||||||| ||||||||||||  |||||| ||||||||    
T  25048056 ggagaaaatttacacacaattccttatgaattgttcttattgttagccaattataaaataacacatggattactaatgtatgtcactaatcgtc 25047963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 153 - 229
Target Start/End: Original strand, 2222037 - 2222113
Alignment:
Q  153 ggagaaaacttacacatagttacttatgagctgttcttactgttagttaattataaaataacacgtggattactaat 229  Q
    |||||||||||||||| | || ||||||| || |||||| ||||||  ||||||||||||||||||| |||||||||    
T  2222037 ggagaaaacttacacacaattccttatgaactattcttattgttaggcaattataaaataacacgtgaattactaat 2222113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 372 - 430
Target Start/End: Complemental strand, 44539453 - 44539394
Alignment:
Q  372 tgttgtacatctgtatcgtt-ccctcaatacaaccgacaaagattgccaagtattttcat 430  Q
    |||||||||||||| | ||| ||||||||||||||||||||| |||||||||||||||||    
T  44539453 tgttgtacatctgtgttgtttccctcaatacaaccgacaaaggttgccaagtattttcat 44539394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 392 - 428
Target Start/End: Complemental strand, 25047854 - 25047818
Alignment:
Q  392 ccctcaatacaaccgacaaagattgccaagtattttc 428  Q
    |||||||||||||||||||||||||||||||||||||    
T  25047854 ccctcaatacaaccgacaaagattgccaagtattttc 25047818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 427
Target Start/End: Original strand, 27339643 - 27339699
Alignment:
Q  372 tgttgtacatctgtatcgttccc-tcaatacaaccgacaaagattgccaagtatttt 427  Q
    ||||||| |||||| | |||||| |||||||||||||||||||||||||||||||||    
T  27339643 tgttgtaaatctgtgttgttcccctcaatacaaccgacaaagattgccaagtatttt 27339699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 357
Target Start/End: Complemental strand, 35193365 - 35193325
Alignment:
Q  317 ttacttttttatcagccgcttttatgttgtacatctgtgtt 357  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  35193365 ttacttttttatcagccgattttatgttgtacatctgtgtt 35193325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 79
Target Start/End: Original strand, 2221912 - 2221954
Alignment:
Q  37 aaaactacccctttcagcacatttttgggttgaaattttcttt 79  Q
    ||||||||||||||||||||| |||||||||||| ||||||||    
T  2221912 aaaactacccctttcagcacacttttgggttgaacttttcttt 2221954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 35193695 - 35193642
Alignment:
Q  25 ctatgtataaagaaaactacccctttcagcacatttttgggttgaaattttcttt 79  Q
    |||| ||||||||||||||||| |||||||||| |||||||||| ||||||||||    
T  35193695 ctatatataaagaaaactaccc-tttcagcacaattttgggttggaattttcttt 35193642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 44539776 - 44539722
Alignment:
Q  25 ctatgtataaagaaaactacccctttcagcacatttttgggttgaaattttcttt 79  Q
    |||| |||||||||||||| || |||||||||| |||||||||||| ||||||||    
T  44539776 ctatatataaagaaaactatccatttcagcacacttttgggttgaacttttcttt 44539722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 44973191 - 44973133
Alignment:
Q  21 atatctatgtataaagaaaactacccctttcagcacatttttgggttgaaattttcttt 79  Q
    |||| ||| |||||||||||||||||||||||||||| |||| ||||| | ||||||||    
T  44973191 atatatatatataaagaaaactacccctttcagcacacttttaggttggacttttcttt 44973133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 357
Target Start/End: Original strand, 13594634 - 13594679
Alignment:
Q  312 tcatattacttttttatcagccgcttttatgttgtacatctgtgtt 357  Q
    |||| |||||||||||||||||| ||||| ||||||||||||||||    
T  13594634 tcatgttacttttttatcagccgattttacgttgtacatctgtgtt 13594679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 357
Target Start/End: Original strand, 27339614 - 27339659
Alignment:
Q  312 tcatattacttttttatcagccgcttttatgttgtacatctgtgtt 357  Q
    |||| ||||||||||||||||||||||| ||||||| |||||||||    
T  27339614 tcatgttacttttttatcagccgcttttttgttgtaaatctgtgtt 27339659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 357
Target Start/End: Original strand, 43528558 - 43528603
Alignment:
Q  312 tcatattacttttttatcagccgcttttatgttgtacatctgtgtt 357  Q
    |||| |||||||||||||| ||| ||||||||||||||||||||||    
T  43528558 tcatgttacttttttatcaaccgattttatgttgtacatctgtgtt 43528603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 357
Target Start/End: Complemental strand, 44539482 - 44539437
Alignment:
Q  312 tcatattacttttttatcagccgcttttatgttgtacatctgtgtt 357  Q
    |||| |||||||||||||| ||| ||||||||||||||||||||||    
T  44539482 tcatgttacttttttatcaaccgattttatgttgtacatctgtgtt 44539437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 357
Target Start/End: Complemental strand, 44972989 - 44972944
Alignment:
Q  312 tcatattacttttttatcagccgcttttatgttgtacatctgtgtt 357  Q
    |||||||||||||||| |||||| ||||||||| ||||||||||||    
T  44972989 tcatattacttttttaccagccgtttttatgttctacatctgtgtt 44972944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 7061430 - 7061485
Alignment:
Q  25 ctatgtataaagaaaactacccctttcagcacatttttgggttgaaattttctttt 80  Q
    |||| ||||||||||||||||| ||||| || | |||||||||||| |||||||||    
T  7061430 ctatatataaagaaaactacccttttcatcagacttttgggttgaacttttctttt 7061485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 7061697 - 7061751
Alignment:
Q  25 ctatgtataaagaaaactacccctttcagcacatttttgggttgaaattttctttt 80  Q
    |||| ||||||||||||||||| ||||| |||| |||||||||||| |||||||||    
T  7061697 ctatttataaagaaaactaccc-tttcaacacacttttgggttgaacttttctttt 7061751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 357
Target Start/End: Original strand, 7061982 - 7062027
Alignment:
Q  312 tcatattacttttttatcagccgcttttatgttgtacatctgtgtt 357  Q
    |||| |||| ||||||||| ||| ||||||||||||||||||||||    
T  7061982 tcatgttacctttttatcaaccgattttatgttgtacatctgtgtt 7062027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 629370 - 629423
Alignment:
Q  25 ctatgtataaagaaaactacccctttcagcacatttttgggttgaaattttctttt 80  Q
    |||| ||||||||||||||  ||||||||||  ||||||||||||| |||||||||    
T  629370 ctatatataaagaaaactattcctttcagca--tttttgggttgaatttttctttt 629423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 393 - 429
Target Start/End: Original strand, 43528610 - 43528646
Alignment:
Q  393 cctcaatacaaccgacaaagattgccaagtattttca 429  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  43528610 cctcaatacaatcgacaaagattgtcaagtattttca 43528646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 157 - 266
Target Start/End: Original strand, 56426 - 56535
Alignment:
Q  157 aaaacttacacatagttacttatgagctgttcttactgttagttaattataaaataacacgtggattactaattcatgtcaataatcgtctccgttaacc 256  Q
    |||||||||||| |||| ||||||| ||||| |||||||| |  |||||||||||||||||||||||| |||| ||||||| ||| ||||||||||||||    
T  56426 aaaacttacacacagttccttatgaactgtttttactgttcgccaattataaaataacacgtggattattaatccatgtcactaaacgtctccgttaacc 56525  T
Q  257 ctattttacc 266  Q
    || |||||||    
T  56526 ctcttttacc 56535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 436
Target Start/End: Original strand, 56648 - 56710
Alignment:
Q  375 tgtacatctgtatcgttccctc-aatacaaccgacaaagattgccaagtattttcatctctct 436  Q
    ||||||||||| | |||||| | |||||||||| ||||||||||||||||||||||| |||||    
T  56648 tgtacatctgtgttgttccccccaatacaaccggcaaagattgccaagtattttcatatctct 56710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 357
Target Start/End: Original strand, 56616 - 56661
Alignment:
Q  312 tcatattacttttttatcagccgcttttatgttgtacatctgtgtt 357  Q
    |||| ||||||||||||||||| |||||||| ||||||||||||||    
T  56616 tcatgttacttttttatcagccacttttatgctgtacatctgtgtt 56661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 153 - 266
Target Start/End: Complemental strand, 3610 - 3497
Alignment:
Q  153 ggagaaaacttacacatagttacttatgagctgttcttactgttagttaattataaaataacacgtggattactaattcatgtcaataatcgtctccgtt 252  Q
    |||||||||||||||| | || ||||||| |||||||||| ||||| |||||||||||||||||||||||||||||| ||| ||| ||||||||   |||    
T  3610 ggagaaaacttacacacatttccttatgaactgttcttaccgttagctaattataaaataacacgtggattactaatccatatcactaatcgtccatgtt 3511  T
Q  253 aaccctattttacc 266  Q
    |||||| |||||||    
T  3510 aaccctcttttacc 3497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 436
Target Start/End: Complemental strand, 3419 - 3353
Alignment:
Q  372 tgttgtacatctgtatcgttcc-ctcaatacaaccgacaaaga-ttgccaagtattttcatctctct 436  Q
    |||||||||||||| | ||||| |||||||||||||||||||| ||||||||| ||||||| |||||    
T  3419 tgttgtacatctgtgttgttccgctcaatacaaccgacaaagatttgccaagtgttttcatatctct 3353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 357
Target Start/End: Complemental strand, 3448 - 3403
Alignment:
Q  312 tcatattacttttttatcagccgcttttatgttgtacatctgtgtt 357  Q
    |||| ||| |||||||||||||| ||||||||||||||||||||||    
T  3448 tcatgttagttttttatcagccgattttatgttgtacatctgtgtt 3403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 8e-25; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 175 - 265
Target Start/End: Original strand, 24432212 - 24432302
Alignment:
Q  175 cttatgagctgttcttactgttagttaattataaaataacacgtggattactaattcatgtcaataatcgtctccgttaaccctattttac 265  Q
    ||||||| ||||||||||||||||  ||||||||||||||| ||||| ||||||||||||||| |||||||| ||||||||||| ||||||    
T  24432212 cttatgaactgttcttactgttagccaattataaaataacatgtggaatactaattcatgtcactaatcgtccccgttaaccctcttttac 24432302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 158 - 245
Target Start/End: Complemental strand, 5592807 - 5592720
Alignment:
Q  158 aaacttacacatagttacttatgagctgttcttactgttagttaattataaaataacacgtggattactaattcatgtcaataatcgt 245  Q
    ||||||||| |  ||| ||||||| || |||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||    
T  5592807 aaacttacatacggttccttatgaactattcttactgttagtcaattataaaataacacgtggattactaatccatgtcactaatcgt 5592720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 32889139 - 32889194
Alignment:
Q  25 ctatgtataaagaaaactacccctttcagcacatttttgggttgaaattttctttt 80  Q
    |||| |||||||||||||| ||||||||||||| |||||||||||| |||||||||    
T  32889139 ctatatataaagaaaactatccctttcagcacacttttgggttgaacttttctttt 32889194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 392 - 436
Target Start/End: Original strand, 24432403 - 24432447
Alignment:
Q  392 ccctcaatacaaccgacaaagattgccaagtattttcatctctct 436  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||    
T  24432403 ccctcaatacaaccgacaaagattgccaagtatttacatatctct 24432447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 26527999 - 26527947
Alignment:
Q  25 ctatgtataaagaaaactacccctttcagcacatttttgggttgaaattttcttt 79  Q
    |||||||||||||||||||||||||||||  ||||||||||||| | ||||||||    
T  26527999 ctatgtataaagaaaactacccctttcag--catttttgggttggatttttcttt 26527947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 357
Target Start/End: Original strand, 24409613 - 24409658
Alignment:
Q  312 tcatattacttttttatcagccgcttttatgttgtacatctgtgtt 357  Q
    |||| |||||||||||||| ||||||||||||| ||||||||||||    
T  24409613 tcatgttacttttttatcaaccgcttttatgttctacatctgtgtt 24409658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 26528045 - 26528092
Alignment:
Q  31 ataaagaaaactacccctttcagcacatttttgggttgaaattttcttt 79  Q
    |||||||||||||||| ||||| ||||||||||||||||| ||||||||    
T  26528045 ataaagaaaactaccc-tttcaacacatttttgggttgaacttttcttt 26528092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 32889026 - 32889074
Alignment:
Q  31 ataaagaaaactacccctttcagcacatttttgggttgaaattttcttt 79  Q
    ||||||||||||| ||||||||||||| |||| ||||||| ||||||||    
T  32889026 ataaagaaaactatccctttcagcacacttttaggttgaacttttcttt 32889074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 430
Target Start/End: Original strand, 24409642 - 24409701
Alignment:
Q  372 tgttgtacatctgtatcgttcc-ctcaatacaaccgacaaagattgccaagtattttcat 430  Q
    |||| ||||||||| | ||||| ||||||| ||||||||||||||| |||||||||||||    
T  24409642 tgttctacatctgtgttgttcctctcaatataaccgacaaagattgtcaagtattttcat 24409701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 357
Target Start/End: Original strand, 26528328 - 26528363
Alignment:
Q  322 tttttatcagccgcttttatgttgtacatctgtgtt 357  Q
    ||||||||||||| ||||||||||||||||||||||    
T  26528328 tttttatcagccgattttatgttgtacatctgtgtt 26528363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 17469 - 17415
Alignment:
Q  25 ctatgtataaagaaaactacccctttcagcacatttttgggttgaaattttcttt 79  Q
    |||| ||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  17469 ctatatataaagaaaactacccctttcaacacacttttgggttgaaattttcttt 17415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 201 - 264
Target Start/End: Complemental strand, 17303 - 17240
Alignment:
Q  201 aattataaaataacacgtggattactaattcatgtcaataatcgtctccgttaaccctatttta 264  Q
    ||||||||||||| || |||||||||||| ||||||| |||| ||||||||||||||| |||||    
T  17303 aattataaaataatacatggattactaatccatgtcactaattgtctccgttaaccctctttta 17240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 430
Target Start/End: Complemental strand, 17159 - 17100
Alignment:
Q  372 tgttgtacatctgtatcgttccc-tcaatacaaccgacaaagattgccaagtattttcat 430  Q
    |||||||||| ||| | |||||| | ||||||||||||||||||| ||||||||||||||    
T  17159 tgttgtacatatgtgttgttcccctgaatacaaccgacaaagatttccaagtattttcat 17100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 78
Target Start/End: Complemental strand, 47511 - 47466
Alignment:
Q  31 ataaagaaaactacccctttcagcacatttttgggttgaaattttctt 78  Q
    ||||||||||||||||||||||||||  |||||||||||| |||||||    
T  47511 ataaagaaaactacccctttcagcac--ttttgggttgaatttttctt 47466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0990 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0990
Description:

Target: scaffold0990; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 350
Target Start/End: Original strand, 1083 - 1116
Alignment:
Q  317 ttacttttttatcagccgcttttatgttgtacat 350  Q
    |||||||||||| |||||||||||||||||||||    
T  1083 ttacttttttattagccgcttttatgttgtacat 1116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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