View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18625_low_9 (Length: 295)
Name: NF18625_low_9
Description: NF18625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18625_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 17 - 284
Target Start/End: Original strand, 28595361 - 28595628
Alignment:
| Q |
17 |
ctatacaactgcaacatcataatgcagttgtacgttgaggatcctagtcgataagtgtggatggatggatatatacctgagtgttctctagaggggagtg |
116 |
Q |
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| T |
28595361 |
ctatacaactgcaacatcataatgcagttgtatgttgaggatcctagtcgataagtgtggatggatggatatatacctgagtgttctctagaggggagtg |
28595460 |
T |
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| Q |
117 |
atgatgacattaaaattgctagacattcgcattggcgttgtagggttgcaacccaacgttgtgcgccaaaacccatgcctaagcttagcaagggtctata |
216 |
Q |
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| T |
28595461 |
atgatgacattaaaattgctagacattcgcattggcgttgtagggttgcaacccaacgttgtgcgccaaaacccatgcctaagcttagcaagggtctata |
28595560 |
T |
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| Q |
217 |
gagctggtgaacttggctttcttcatattctgcatgctccacccatgtcacctgcatcatatgttcat |
284 |
Q |
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| T |
28595561 |
gagctggtgaacttggctttcttcatattctgcatgctccacccatgtcacctgcatcatatgctcat |
28595628 |
T |
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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 122 - 272
Target Start/End: Original strand, 12323721 - 12323871
Alignment:
| Q |
122 |
gacattaaaattgctagacattcgcattggcgttgtagggttgcaacccaacgttgtgcgccaaaacccatgcctaagcttagcaagggtctatagagct |
221 |
Q |
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|||||||| || || || || ||||| |||||||||||||| || ||||| || || ||||| ||||| ||| |||| | || |||||||| |||| |
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| T |
12323721 |
gacattaatatggcaaggcactcgcactggcgttgtagggtagcgacccagcgagacgcaccaaaccccatacctgagctcaacagaggtctatacagct |
12323820 |
T |
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| Q |
222 |
ggtgaacttggctttcttcatattctgcatgctccacccatgtcacctgca |
272 |
Q |
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| T |
12323821 |
ggtggacttgattttcctcatattctgtatgttccacccatgtcacctgca |
12323871 |
T |
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