View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18626_high_3 (Length: 477)
Name: NF18626_high_3
Description: NF18626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18626_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 10 - 462
Target Start/End: Original strand, 3985264 - 3985716
Alignment:
| Q |
10 |
aataatatttagggtgcttggtaatataccaacaatgtgcactggcagtatactccgtcagcctgttgccacatctttcaaatgtatcagtacaaagctt |
109 |
Q |
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| T |
3985264 |
aataatatttagggtgcttggtaatataccaacaatgtgcactggcagtatactccgtcagcctgttgccacatccttcaaatgtatcagtacaaagctt |
3985363 |
T |
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| Q |
110 |
caaatattcagcttgcattgtaaacttccaagttccaaccattattttccattcaatggattattaatgttctttaggacagtggtcattggacaatgcc |
209 |
Q |
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| T |
3985364 |
caaatattcagcttgcattgtaaacttccaagttccaaccattattttccattcaatggattattaatgttctttaggacagtggtcattggacaatgcc |
3985463 |
T |
|
| Q |
210 |
caacctctgtatacttataactattaaatctttaatcacaaatctcctgcgtcatttttatatgagttttaatctgcacttagcgtatagtagattgagt |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3985464 |
caacctctgtatacttataactattaaatctttaatcacaaatctcctgcgtcatttttatatgagttttagtctgcacttagcgtatagtagattgagt |
3985563 |
T |
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| Q |
310 |
tcaccatttttggtgtgcatttctcaatttcaggtcacctttaatggatcctttgatcacatgaatattgatgcaaccaggtaagcttgctttcttgctt |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3985564 |
tcaccatttttggtgtgcatttctcaatttcaggtcacctttaatggatcctttgatcacatgaatattgatgcaaccaggtaagcttgctttcttgctt |
3985663 |
T |
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| Q |
410 |
ttttaagctgaaagttcttacttcactggtgagggggctagtacaaactacat |
462 |
Q |
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| T |
3985664 |
ttttaagctgaaagttcttacttcactggtgagggggctagtacaaactacat |
3985716 |
T |
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