View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18626_high_5 (Length: 376)

Name: NF18626_high_5

Description: NF18626

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF18626_high_5

[»] scaffold0542 (1 HSPs)

Target: scaffold0542 (Bit Score: 212; Significance: 1e-116; HSPs: 1)

Name: scaffold0542

Description:

Target: scaffold0542; HSP #1

Raw Score: 212; E-Value: 1e-116

Query Start/End: Original strand, 50 - 359

Target Start/End: Complemental strand, 7021 - 6710

Alignment:

Q	50	gataatgcagggatggctacttactttgctactaaccatgtttgttggttcctgtttaatgaagtttgaggatgttaatatatttagttatgcaaattaa	149	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	7021	gataatgaagggatggcgacttactttgctactaaccatgtttgttggttcttgtttaatgaagtttgaggatgttaatatatttagttatgcaaattaa	6922	T

Q	150	tcactatagtaattaatttctaagtgatttgacttaagtggttaatcaaatatagctaaagatatattattcgagaaagctcgagttcaaattgtggttg	249	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\| \| \|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|
T	6921	tcactatagtaattaatttttaagtgatttgacttaggtgattaatgaaatatagctaaagaaatattatccgaaagagctcgagttcgaatcgtggttg	6822	T

Q	250	tgactttacttacctatattggttgaactagtattatgaaggtcatattcttcggaaaatcagaaagtcaaaagaag--nnnnnnntcaactaattatga	347	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	6821	tgactttacttacctatattggttgaactagtattatgaaggtcacattcttctaaaaattagaaagtcaaaagaagaaaaaaaaatcaactaattatga	6722	T

Q	348	attcgatcttat	359	Q
		\|\|\|\|\|\|\|\|\|\|\|\|
T	6721	attcgatcttat	6710	T

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