View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18626_high_9 (Length: 319)
Name: NF18626_high_9
Description: NF18626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18626_high_9 |
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| [»] scaffold0542 (1 HSPs) |
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Alignment Details
Target: scaffold0542 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: scaffold0542
Description:
Target: scaffold0542; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 4 - 315
Target Start/End: Complemental strand, 7387 - 7073
Alignment:
| Q |
4 |
atgtcgaagaatatagagaagattaattctgacccagaagtacttgtgattatggctggagaagataaacctacttacatagccaaaccaattattatca |
103 |
Q |
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| T |
7387 |
atgtccaagaacatagagaagattaattctgagccagaagtacttgtgattatggctggagaagataaaccaacttacatagccaaaccaattattatca |
7288 |
T |
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| Q |
104 |
ctacttctttaccttattgcacttgtggaggtgaatcaacttcaacaacatcttcatcaaccttaaccaatgaggaa---acattgactaattaagttgt |
200 |
Q |
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| T |
7287 |
ctacttctttaccttattgcacttgtggaggtgaatcaacttcaacaacatcttcatcaaccttaaccaatgaggaaattacattgactaattaagttgt |
7188 |
T |
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| Q |
201 |
tgtaagcaacaaaattttgatttagtatagagagcgcttcctttatcatatattctagtggttttgtgagcacttgaatatgatcacttaagatgagttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
7187 |
tgtaagcaacaaaattttgatttagtatagagagcgcttcctttatcatatattctagtggttttgtgagcacttgaatatgatcacttaagatgacttt |
7088 |
T |
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| Q |
301 |
tttgttttctttctt |
315 |
Q |
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||||||||||||||| |
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| T |
7087 |
tttgttttctttctt |
7073 |
T |
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