View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18626_low_1 (Length: 628)

Name: NF18626_low_1
Description: NF18626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18626_low_1
NF18626_low_1
[»] chr7 (2 HSPs)
chr7 (19-495)||(3416989-3417471)
chr7 (540-615)||(3417516-3417591)
[»] chr5 (4 HSPs)
chr5 (63-492)||(12540923-12541355)
chr5 (63-492)||(28385572-28386007)
chr5 (547-614)||(12540801-12540868)
chr5 (549-617)||(28385447-28385515)
[»] chr2 (6 HSPs)
chr2 (69-492)||(13440438-13440864)
chr2 (63-492)||(13448601-13449033)
chr2 (196-492)||(13455072-13455371)
chr2 (547-614)||(13448479-13448546)
chr2 (540-610)||(13454954-13455024)
chr2 (540-610)||(13440320-13440390)
[»] chr6 (4 HSPs)
chr6 (175-488)||(12589787-12590103)
chr6 (319-492)||(12483229-12483402)
chr6 (576-610)||(12590197-12590231)
chr6 (540-572)||(12483450-12483482)
[»] chr4 (8 HSPs)
chr4 (157-492)||(48958385-48958723)
chr4 (162-492)||(48911950-48912283)
chr4 (190-490)||(48974349-48974652)
chr4 (549-617)||(48965442-48965510)
chr4 (190-281)||(48962746-48962837)
chr4 (540-610)||(48958264-48958337)
chr4 (540-610)||(48961413-48961486)
chr4 (426-472)||(48965587-48965633)
[»] scaffold0536 (3 HSPs)
scaffold0536 (338-492)||(6295-6449)
scaffold0536 (359-462)||(1270-1373)
scaffold0536 (209-280)||(6163-6234)
[»] chr8 (2 HSPs)
chr8 (198-281)||(12641122-12641205)
chr8 (358-461)||(12641285-12641388)


Alignment Details
Target: chr7 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 19 - 495
Target Start/End: Original strand, 3416989 - 3417471
Alignment:
Q  19 tcttgctcatggaatcgcttagaacaaataatttactttttacggattctgatt------caagttcctatgtcgttccaaactttcctcttcctatcac 112  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||      ||||||||||| ||||||||||||||||||||||||||||    
T  3416989 tcttgctcatggaatcccttagaacaaataatttactttttacggattctgattcggattcaagttcctatatcgttccaaactttcctcttcctatcac 3417088  T
Q  113 catgtgcagtaaaccaccaaaggttctcagtaaattcataggactgatgcttgacacagtgttcaaaagtaatggcttcatcgtcaacaacttcattgaa 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3417089 catgtgcagtaaaccaccaaaggttctcagtaaattcataggactgatgcttgacacagtgttcaaaagtaatggctttatcgtcaacaacttcattgaa 3417188  T
Q  213 cttgatggagaagagtgtattcaacactatgagaaaaccgcaggtcacaaggcttggcatcttggtccatcttctatttggagaaccactctagagaaag 312  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  3417189 cttgatggagaagagtgtattcaacactatgagaaaaccgtaggtcacaaggcttggcatcttggtccatcttctatttggagaaccactctagagaaat 3417288  T
Q  313 caggtgggggaaacgagggtgctgagagtgagcatgagtgcctgagttggctcaactcacaacaagttaactcagtgttgtacatatgttttggaagctt 412  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3417289 caggtgggggaaacgagggtgctgagagtgagcatgagtgcctgcgttggctcaactcacaacaagttaactcagtgttgtacatatgttttggaagctt 3417388  T
Q  413 gaactatttctctgataaacaactatatgagattgcatgcgcaatagaagcatcgggtcacccattcatatgggttgttcttg 495  Q
     ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3417389 aaactatttctctgataaacaactatatgagattgcatacgcaatagaagcatcgggtcacccattcatatgggttgttcttg 3417471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 540 - 615
Target Start/End: Original strand, 3417516 - 3417591
Alignment:
Q  540 tggttgtcgaagggatttgaggagagaaacattggaaagaagggtttgatcgttaggggttgggccccacaggttc 615  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3417516 tggttgccgaagggatttgaggagagaaacattggaaagaagggtttgatcgttaggggttgggccccacaggttc 3417591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 63 - 492
Target Start/End: Complemental strand, 12541355 - 12540923
Alignment:
Q  63 gattctgattcaagttcctatgtcgttccaaactttcctcttcctatcaccatgtgcagtaaaccaccaaaggttctcagtaaattcataggactgatgc 162  Q
    ||||| ||||||||||| |||||||||||||| ||||||| || |||||||||||||||||||||  ||||||||||||| |||||||||||| ||||||    
T  12541355 gattcggattcaagttcgtatgtcgttccaaattttcctcatcgtatcaccatgtgcagtaaaccgtcaaaggttctcagcaaattcataggattgatgc 12541256  T
Q  163 ttgacacagtgttcaaaagtaatggcttcatcgtcaacaacttcattgaacttgatggagaagagtgtattcaacactatgagaaaaccgcaggtcacaa 262  Q
    |||||||||||||||||||||  |||| |||  ||||||||||  ||||||||||||||||||||||| | |||||||| ||||||||| | ||||||||    
T  12541255 ttgacacagtgttcaaaagtacaggctacattatcaacaactttgttgaacttgatggagaagagtgtgtccaacactacgagaaaaccacgggtcacaa 12541156  T
Q  263 ggcttggcatcttggtcca---tcttctatttggagaaccactctagagaaagcaggtgggggaaacgagggtgctgagagtgagcatgagtgcctgagt 359  Q
    |||||||||||||||||||   |||| ||||  || || || || ||||||||||||  ||||||| |||||||||| ||| ||||| |||| ||| ||     
T  12541155 ggcttggcatcttggtccaacttcttttattcagaaaaacattcaagagaaagcagggaggggaaatgagggtgctgcgagcgagcacgagtcccttagc 12541056  T
Q  360 tggctcaactcacaacaagttaactcagtgttgtacatatgttttggaagcttgaactatttctctgataaacaactatatgagattgcatgcgcaatag 459  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||| | ||  |||||| ||| ||||||||||||||||||||||| ||| |||    
T  12541055 tggctcaactcacagcaagttaactcagtggtgtacatatgttttggaagcataaatcatttctttgacaaacaactatatgagattgcatgtgcagtag 12540956  T
Q  460 aagcatcgggtcacccattcatatgggttgttc 492  Q
    ||| |  ||||||||||||||||||||||||||    
T  12540955 aaggaatgggtcacccattcatatgggttgttc 12540923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 63 - 492
Target Start/End: Complemental strand, 28386007 - 28385572
Alignment:
Q  63 gattctgattcaagttcctatgtcgttccaaactttcctcttccta---tcaccatgtgcagtaaaccaccaaaggttctcagtaaattcataggactga 159  Q
    ||||| ||||||||||| ||||||||||||||  ||| || |  ||   | ||| |||| ||||||||||||||||||||||| |  ||||||||| |||    
T  28386007 gattcagattcaagttcatatgtcgttccaaatcttcatcatgataatattaccttgtgtagtaaaccaccaaaggttctcagcatgttcataggaatga 28385908  T
Q  160 tgcttgacacagtgttcaaaagtaatggcttcatcgtcaacaacttcattgaacttgatggagaagagtgtattcaacactatgagaaaaccgcaggtca 259  Q
    |||||||||| ||| |||||||||  |||| |||| ||||||||||  ||||||||||||||||||||||| |  ||||||| ||||||||| | |||||    
T  28385907 tgcttgacacggtgctcaaaagtacaggctacatcatcaacaactttgttgaacttgatggagaagagtgtgtcaaacactacgagaaaaccacgggtca 28385808  T
Q  260 caaggcttggcatcttggtccatcttc---tatttggagaaccactctagagaaagcaggtgggggaaacgagggtgctgagagtgagcatgagtgcctg 356  Q
    |||||||||||||||||||||| ||||   |||| | | |||   || |||||||||||    ||||||| || ||| || ||| ||||| |||||||||    
T  28385807 caaggcttggcatcttggtccaacttcctttattcgtaaaactgttcaagagaaagcagagaagggaaacaagagtgatgtgagcgagcacgagtgcctg 28385708  T
Q  357 agttggctcaactcacaacaagttaactcagtgttgtacatatgttttggaagcttgaactatttctctgataaacaactatatgagattgcatgcgcaa 456  Q
    |  |||||||| ||||| | ||||||||||||  |||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||     
T  28385707 aactggctcaaatcacagcgagttaactcagttgtgtacatatgttttggaagcataaaccatttctctgataaacaactatatgagattgcatgcgcag 28385608  T
Q  457 tagaagcatcgggtcacccattcatatgggttgttc 492  Q
    |||||||||| |||||||||||||||||||||||||    
T  28385607 tagaagcatcaggtcacccattcatatgggttgttc 28385572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 547 - 614
Target Start/End: Complemental strand, 12540868 - 12540801
Alignment:
Q  547 cgaagggatttgaggagagaaacattggaaagaagggtttgatcgttaggggttgggccccacaggtt 614  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  12540868 cgaagggatttgaggagagaaacattggaaaaaagggtttgatcattaggggttgggccccacaggtt 12540801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 549 - 617
Target Start/End: Complemental strand, 28385515 - 28385447
Alignment:
Q  549 aagggatttgaggagagaaacattggaaagaagggtttgatcgttaggggttgggccccacaggttctg 617  Q
    |||||||||||||||||||||||||||||||||||||| ||  | ||||||||||||||||| ||||||    
T  28385515 aagggatttgaggagagaaacattggaaagaagggtttcataatcaggggttgggccccacaagttctg 28385447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 157; Significance: 4e-83; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 69 - 492
Target Start/End: Complemental strand, 13440864 - 13440438
Alignment:
Q  69 gattcaagttcctatgtcgttccaaactttcctcttcctatcaccatgtgcagtaaaccaccaaaggttctcagtaaattcataggactgatgcttgaca 168  Q
    ||||||||||||| ||| |||||||| ||||||| || ||| ||| ||||| | ||||| ||||||||  | || |||||| ||  | |||||||||  |    
T  13440864 gattcaagttcctttgttgttccaaattttcctcatcgtataaccttgtgcggaaaaccgccaaaggtaattagcaaattcctaaaaatgatgcttggga 13440765  T
Q  169 cagtgttcaaaagtaatggcttcatcgtcaacaacttcattgaacttgatggagaagagtgtattcaacactatgagaaaaccgcaggtcacaaggcttg 268  Q
    ||||| |||||||||| |   ||||| |||||||||||| ||||||||| ||||||||||| || |||||||||||||||||| | |||||||||| |||    
T  13440764 cagtgctcaaaagtaaagcactcatcatcaacaacttcactgaacttgacggagaagagtgcatccaacactatgagaaaaccacgggtcacaaggtttg 13440665  T
Q  269 gcatcttggtccatcttct---atttggagaaccactctagagaaagcaggtgggggaaacgagggtgctgagagtgagcatgagtgcctgagttggctc 365  Q
    |||||| |||||| |||||   ||| | | ||||| || |||||||||||   ||||||| ||||||| || ||    ||| || ||| |||||||||||    
T  13440664 gcatctcggtccaacttctcttattcgtaaaaccattcaagagaaagcagagaggggaaaggagggtgatgtgaacatgcacgaatgcatgagttggctc 13440565  T
Q  366 aactcacaacaagttaactcagtgttgtacatatgttttggaagcttgaactatttctctgataaacaactatatgagattgcatgcgcaatagaagcat 465  Q
     ||||| |  |||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  13440564 gactcagagaaagttaactcggtgttgtacatatgttttggaagcatcaactatttctctgataaacaactatatgagatggcgtgcgcaatagaagcat 13440465  T
Q  466 cgggtcacccattcatatgggttgttc 492  Q
    |  ||||||||||||||||||||||||    
T  13440464 ctagtcacccattcatatgggttgttc 13440438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 63 - 492
Target Start/End: Complemental strand, 13449033 - 13448601
Alignment:
Q  63 gattctgattcaagttcctatgtcgttccaaactttcctcttcctatcaccatgtgcagtaaaccaccaaaggttctcagtaaattcataggactgatgc 162  Q
    ||||| ||||||||||||| ||| |||||||| |||||||  | ||||||| ||||  | ||||| ||||||||  || ||| |||||| ||| ||||||    
T  13449033 gattcggattcaagttcctttgttgttccaaattttcctcaccatatcaccttgtgtggaaaaccgccaaaggtaatcggtatattcatgggaatgatgc 13448934  T
Q  163 ttgacacagtgttcaaaagtaatggcttcatcgtcaacaacttcattgaacttgatggagaagagtgtattcaacactatgagaaaaccgcaggtcacaa 262  Q
    |||| || ||| | |||||||| |   | ||| |||||||||||| ||||||||||||||||||||| || |||||||| |||||| || | ||||||||    
T  13448933 ttgagacggtgcttaaaagtaaagcactaatcatcaacaacttcagtgaacttgatggagaagagtgcatacaacactacgagaaagccacgggtcacaa 13448834  T
Q  263 ggcttggcatcttggtccatcttct---atttggagaaccactctagagaaagcaggtgggggaaacgagggtgctgagagtgagcatgagtgcctgagt 359  Q
    || |||||||||||||||| |||||   ||| | | |||  ||| ||||||| |||   ||||||| |||||||||| || || ||| ||| ||||||||    
T  13448833 ggtttggcatcttggtccaacttctcttattcgcaaaactgctcaagagaaatcagagaggggaaatgagggtgctgtgaatgtgcacgagagcctgagt 13448734  T
Q  360 tggctcaactcacaacaagttaactcagtgttgtacatatgttttggaagcttgaactatttctctgataaacaactatatgagattgcatgcgcaatag 459  Q
    |||||| | ||| |   |||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||| ||||| ||||| || ||||    
T  13448733 tggctcgattcagagagagttaactcagtgttgtacatatgttttggaagcatcaactatttttctgataaacaactatacgagatggcatgtgcgatag 13448634  T
Q  460 aagcatcgggtcacccattcatatgggttgttc 492  Q
    ||||||| |||||||||||||||||||||||||    
T  13448633 aagcatccggtcacccattcatatgggttgttc 13448601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 196 - 492
Target Start/End: Complemental strand, 13455371 - 13455072
Alignment:
Q  196 tcaacaacttcattgaacttgatggagaagagtgtattcaacactatgagaaaaccgcaggtcacaaggcttggcatcttggtccatcttct---atttg 292  Q
    |||||||||||| |||| |||||||||||||||| || |||||||| || |||||  |||||||||||| ||||||| |||||||| |||||   |||||    
T  13455371 tcaacaacttcagtgaatttgatggagaagagtgcatccaacactacgaaaaaacaacaggtcacaaggtttggcatattggtccaacttctcttatttg 13455272  T
Q  293 gagaaccactctagagaaagcaggtgggggaaacgagggtgctgagagtgagcatgagtgcctgagttggctcaactcacaacaagttaactcagtgttg 392  Q
     ||||||  || ||| ||| |||   |||||||||||| |  || || ||  || ||||||||||| |||||  ||||| |   |||||||||||| |||    
T  13455271 cagaaccgttcaagaaaaatcagagaggggaaacgaggtttttgtgaatgtacacgagtgcctgagctggcttgactcaaagagagttaactcagtattg 13455172  T
Q  393 tacatatgttttggaagcttgaactatttctctgataaacaactatatgagattgcatgcgcaatagaagcatcgggtcacccattcatatgggttgttc 492  Q
    |||||||||||||||||| | || ||||  ||| ||||||||||||||||||| |||||| || |||||||| | ||||| || ||||||||||||||||    
T  13455171 tacatatgttttggaagcatcaattattcatctaataaacaactatatgagatggcatgctcactagaagcagcaggtcaaccgttcatatgggttgttc 13455072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 547 - 614
Target Start/End: Complemental strand, 13448546 - 13448479
Alignment:
Q  547 cgaagggatttgaggagagaaacattggaaagaagggtttgatcgttaggggttgggccccacaggtt 614  Q
    ||||||||||||| |||||||| || || ||||||||||||||| |||||||||||||||||||||||    
T  13448546 cgaagggatttgaagagagaaatatcgggaagaagggtttgatcattaggggttgggccccacaggtt 13448479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 540 - 610
Target Start/End: Complemental strand, 13455024 - 13454954
Alignment:
Q  540 tggttgtcgaagggatttgaggagagaaacattggaaagaagggtttgatcgttaggggttgggccccaca 610  Q
    |||||| ||||||||||||| |||| |||||| |  || |||||||||||| |||||||||||||||||||    
T  13455024 tggttgccgaagggatttgaagagaaaaacatcgagaaaaagggtttgatcattaggggttgggccccaca 13454954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 540 - 610
Target Start/End: Complemental strand, 13440390 - 13440320
Alignment:
Q  540 tggttgtcgaagggatttgaggagagaaacattggaaagaagggtttgatcgttaggggttgggccccaca 610  Q
    |||||| | |||||||| || |||||||||||| | | || |||||||||| ||| |||||||||||||||    
T  13440390 tggttgccaaagggattcgaagagagaaacattaggaggatgggtttgatcattaagggttgggccccaca 13440320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 3e-34; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 175 - 488
Target Start/End: Original strand, 12589787 - 12590103
Alignment:
Q  175 tcaaaagtaatggcttcatcgtcaacaacttcattgaacttgatggagaagagtgtattcaacactatgagaaaaccgcaggtcacaaggcttggcatct 274  Q
    |||||||||||||  |||| || |||||||||  ||||||||||||  |||||||| |  ||||||||||||||||| ||||||||||||||||||||||    
T  12589787 tcaaaagtaatggactcattgttaacaacttcgctgaacttgatggccaagagtgtgtcaaacactatgagaaaaccacaggtcacaaggcttggcatct 12589886  T
Q  275 tggtccatcttc---tatttggagaaccactctagagaaagcaggtgggggaaacgagggtgctgagagtgagcatgagtgcctgagttggctcaactca 371  Q
    ||||||| ||||   ||||   | |||   || ||||||||||| | ||||||| ||| ||| || ||  | ||| ||||| ||||||||||| |||||     
T  12589887 tggtccagcttctcttattcacaaaactgttcaagagaaagcagataggggaaatgagagtgttgtgaacgtgcaagagtgtctgagttggctaaactcg 12589986  T
Q  372 caacaagttaactcagtgttgtacatatgttttggaagcttgaactatttctctgataaacaactatatgagattgcatgcgcaatagaagcatcgggtc 471  Q
     | | || |||||| |||||||||||||| ||||| ||| |   ||||||||| ||||||||||| ||||||||| | || |  ||||||||||| || |    
T  12589987 aagcgagataactctgtgttgtacatatgctttgggagcatatgctatttctcagataaacaactttatgagatttcgtgtggcatagaagcatcaggcc 12590086  T
Q  472 acccattcatatgggtt 488  Q
    ||  |||| ||||||||    
T  12590087 acgaattcgtatgggtt 12590103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 319 - 492
Target Start/End: Original strand, 12483229 - 12483402
Alignment:
Q  319 ggggaaacgagggtgctgagagtgagcatgagtgcctgagttggctcaactcacaacaagttaactcagtgttgtacatatgttttggaagcttgaacta 418  Q
    ||||||||||| ||| || ||| | ||||||||| |  |||||||| |||||| | ||||  || ||||||||||||||||| ||||| ||| |   | |    
T  12483229 ggggaaacgagagtgttgtgagcgtgcatgagtgtcaaagttggctaaactcaaagcaagaaaattcagtgttgtacatatgctttgggagcctatgcaa 12483328  T
Q  419 tttctctgataaacaactatatgagattgcatgcgcaatagaagcatcgggtcacccattcatatgggttgttc 492  Q
    ||||||||||||||| || || || ||| |||||| |||||||||||||||| |   |||||||||||||||||    
T  12483329 tttctctgataaacagctttacgaaatttcatgcggaatagaagcatcgggtaaaaaattcatatgggttgttc 12483402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 576 - 610
Target Start/End: Original strand, 12590197 - 12590231
Alignment:
Q  576 aagaagggtttgatcgttaggggttgggccccaca 610  Q
    ||||||||||||||| |||||||||||||||||||    
T  12590197 aagaagggtttgatcattaggggttgggccccaca 12590231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 540 - 572
Target Start/End: Original strand, 12483450 - 12483482
Alignment:
Q  540 tggttgtcgaagggatttgaggagagaaacatt 572  Q
    |||||| ||||||||||||||||||||||||||    
T  12483450 tggttgccgaagggatttgaggagagaaacatt 12483482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 3e-28; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 157 - 492
Target Start/End: Complemental strand, 48958723 - 48958385
Alignment:
Q  157 tgatgcttgacacagtgttcaaaagtaatggcttcatcgtcaacaacttcattgaacttgatggagaagagtgtattcaacactatgagaaaaccgcagg 256  Q
    |||||||||| ||| |  |||||||||| ||  ||||| ||||||||||||||||||||||||| |||||||| ||  |||||||  |||||| | | ||    
T  48958723 tgatgcttgagacaatcctcaaaagtaagggactcatcatcaacaacttcattgaacttgatggtgaagagtgcatcgaacactacaagaaaatcacggg 48958624  T
Q  257 tcacaaggcttggcatcttggtccatcttc---tatttggagaaccactctagagaaagcaggtgggggaaacgagggtgctgagagtgagcatgagtgc 353  Q
    |||||||| |||||||||||||||  ||||   |||| |   ||||| || ||||||| |||   ||||||| |||  || ||  |||| |||||  ||     
T  48958623 tcacaaggtttggcatcttggtcctgcttctcttattcgccaaaccattcaagagaaatcagagaggggaaatgagaatgttgttagtgtgcatggttgt 48958524  T
Q  354 ctgagttggctcaactcacaacaagttaactcagtgttgtacatatgttttggaagcttgaactatttctctgataaacaactatatgagattgcatgcg 453  Q
    ||||||||||||||||   |   |  ||||||||||||||||||||| ||||||||| |    ||||| |||||||||||||| ||||||||||| || |    
T  48958523 ctgagttggctcaacttgaagagacataactcagtgttgtacatatgctttggaagcatatgttatttatctgataaacaactttatgagattgcgtgtg 48958424  T
Q  454 caatagaagcatcgggtcacccattcatatgggttgttc 492  Q
      ||||||||||| ||||||  |||  ||||||||||||    
T  48958423 ggatagaagcatcaggtcacgaatttgtatgggttgttc 48958385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 162 - 492
Target Start/End: Original strand, 48911950 - 48912283
Alignment:
Q  162 cttgacacagtgttcaaaagtaatggcttcatcgtcaacaacttcattgaacttgatggagaagagtgtattcaacactatgagaaaaccgcaggtcaca 261  Q
    ||||| ||||| ||||||||||| ||  || | |||||||| ||   ||||||||| || ||||||| |||  ||||||| ||||||||  |  ||||||    
T  48911950 cttgagacagttttcaaaagtaacggaatccttgtcaacaattttgctgaacttgacggtgaagagtatatcgaacactacgagaaaactacttgtcaca 48912049  T
Q  262 aggcttggcatcttggtccatcttct---atttggagaaccactctagagaaagcaggtgggggaaacgagggtgctgagagtgagcatgagtgcctgag 358  Q
    | |||||||||||||||||| |||||   ||| | ||||| | || |||||| || |   | ||| | ||| ||| || ||||| ||| |||||  ||||    
T  48912050 aagcttggcatcttggtccagcttctcttattcgcagaactattcaagagaaggctgagagaggagaagagagtgttgtgagtgtgcacgagtgtttgag 48912149  T
Q  359 ttggctcaactcacaacaagttaactcagtgttgtacatatgttttggaagcttgaactatttctctgataaacaactatatgagattgcatgcgcaata 458  Q
    |||||| |||||  |||||| |||||| ||| |||||||||| |||||||||       |||| || ||||||||||| ||||||||||| ||||  ||     
T  48912150 ttggcttaactcgaaacaagataactcggtggtgtacatatgctttggaagccaatgtcatttttcggataaacaactttatgagattgcgtgcgggatt 48912249  T
Q  459 gaagcatcgggtcacccattcatatgggttgttc 492  Q
    ||||||||| |||||  |||||||||||||||||    
T  48912250 gaagcatcgagtcacgaattcatatgggttgttc 48912283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 190 - 490
Target Start/End: Complemental strand, 48974652 - 48974349
Alignment:
Q  190 tcatcgtcaacaacttcattgaacttgatggagaagagtgtattcaacactatgagaaaaccgcaggtcacaaggcttggcatcttggtccatcttct-- 287  Q
    |||||||||||||||||| ||| ||||||||||||||||  ||  | || |||||||||||   ||||||    ||||||||| | || |||||||||      
T  48974652 tcatcgtcaacaacttcactgagcttgatggagaagagtacatcgagcattatgagaaaacaataggtcatcgagcttggcatttgggaccatcttctct 48974553  T
Q  288 -atttggagaaccactctagagaaagcaggtggggga--aacgagggtgctgagagtgagcatgagtgcctgagttggctcaactcacaacaagttaact 384  Q
     ||||| || ||||||| ||||||||||| | |||||  ||| || ||  ||   |||  ||||||||| | |||||||| || ||| | |||   ||||    
T  48974552 catttgtaggaccactcaagagaaagcagataggggacaaacaagtgtagtggacgtg--catgagtgcttaagttggctaaattcaaagcaacccaact 48974455  T
Q  385 cagtgttgtacatatgttttggaagcttgaactatttctctgataaacaactatatgagattgcatgcgcaatagaagcatcgggtcacccattcatatg 484  Q
    ||||| | ||||||||||| || ||| |   | ||||| || |||| ||| | |||||||||||| |||||||||||||||||||||||| |||||||||    
T  48974454 cagtgctctacatatgtttcgggagcctctgccatttcactaataagcaattgtatgagattgcaagcgcaatagaagcatcgggtcaccaattcatatg 48974355  T
Q  485 ggttgt 490  Q
    ||||||    
T  48974354 ggttgt 48974349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 549 - 617
Target Start/End: Complemental strand, 48965510 - 48965442
Alignment:
Q  549 aagggatttgaggagagaaacattggaaagaagggtttgatcgttaggggttgggccccacaggttctg 617  Q
    |||||||| || |||||||||||||||||||||||||||||  ||||||||||||| || |||||||||    
T  48965510 aagggattcgaagagagaaacattggaaagaagggtttgattattaggggttgggctccgcaggttctg 48965442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 190 - 281
Target Start/End: Complemental strand, 48962837 - 48962746
Alignment:
Q  190 tcatcgtcaacaacttcattgaacttgatggagaagagtgtattcaacactatgagaaaaccgcaggtcacaaggcttggcatcttggtcca 281  Q
    |||| ||||||||||||  ||||||||| || |||||||| ||  ||||||| ||||||||| | |||||||||||||||||||| ||||||    
T  48962837 tcattgtcaacaacttcgctgaacttgacggtgaagagtgcatcgaacactacgagaaaaccacgggtcacaaggcttggcatctcggtcca 48962746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 540 - 610
Target Start/End: Complemental strand, 48958337 - 48958264
Alignment:
Q  540 tggttgtcgaagggatttgaggagagaaacattggaaagaag---ggtttgatcgttaggggttgggccccaca 610  Q
    |||||| |||| ||||| || |||||||||||||||||||||   ||||||||| ||||||| |||||||||||    
T  48958337 tggttgccgaaaggattcgaagagagaaacattggaaagaagaaaggtttgatcattagggggtgggccccaca 48958264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 540 - 610
Target Start/End: Complemental strand, 48961486 - 48961413
Alignment:
Q  540 tggttgtcgaagggatttgaggagagaaacattgga---aagaagggtttgatcgttaggggttgggccccaca 610  Q
    |||||| |||| |||||||| ||||||||||||| |   ||||||||||||||| ||| ||| |||||||||||    
T  48961486 tggttgccgaaaggatttgaagagagaaacattgaaaagaagaagggtttgatcattaaggggtgggccccaca 48961413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 426 - 472
Target Start/End: Complemental strand, 48965633 - 48965587
Alignment:
Q  426 gataaacaactatatgagattgcatgcgcaatagaagcatcgggtca 472  Q
    |||||||| || ||||||||||| || ||||||||||||||||||||    
T  48965633 gataaacagctttatgagattgcgtgtgcaatagaagcatcgggtca 48965587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 338 - 492
Target Start/End: Original strand, 6295 - 6449
Alignment:
Q  338 gagtgagcatgagtgcctgagttggctcaactcacaacaagttaactcagtgttgtacatatgttttggaagcttgaactatttctctgataaacaacta 437  Q
    ||||| ||||||||| |||||||||||  ||||  | | || ||||||||||||||||||||| |||||||||||   |  |||| | |||||||||||     
T  6295 gagtgtgcatgagtgtctgagttggctagactcgaagccagataactcagtgttgtacatatgctttggaagcttatgccttttcccggataaacaactt 6394  T
Q  438 tatgagattgcatgcgcaatagaagcatcgggtcacccattcatatgggttgttc 492  Q
    || ||||||||||| |  ||||||||||||||||||  |||||||||||||||||    
T  6395 tacgagattgcatgtgggatagaagcatcgggtcacaaattcatatgggttgttc 6449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 462
Target Start/End: Original strand, 1270 - 1373
Alignment:
Q  359 ttggctcaactcacaacaagttaactcagtgttgtacatatgttttggaagcttgaactatttctctgataaacaactatatgagattgcatgcgcaata 458  Q
    ||||||||||||| | | || |||||||||  | |||||||| ||||||| |||   ||||||| ||||||||||| | |||||||||||| | ||| ||    
T  1270 ttggctcaactcaaagcgagataactcagtactctacatatgctttggaaccttttgctatttccctgataaacaattgtatgagattgcaagtgcacta 1369  T
Q  459 gaag 462  Q
    ||||    
T  1370 gaag 1373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 280
Target Start/End: Original strand, 6163 - 6234
Alignment:
Q  209 tgaacttgatggagaagagtgtattcaacactatgagaaaaccgcaggtcacaaggcttggcatcttggtcc 280  Q
    ||||||||| || |||||||  ||  ||||||| ||||||||  |||||||||| |||||||||||||||||    
T  6163 tgaacttgacggtgaagagtacatcgaacactacgagaaaactacaggtcacaaagcttggcatcttggtcc 6234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 198 - 281
Target Start/End: Original strand, 12641122 - 12641205
Alignment:
Q  198 aacaacttcattgaacttgatggagaagagtgtattcaacactatgagaaaaccgcaggtcacaaggcttggcatcttggtcca 281  Q
    ||||||||  ||||||||||||| ||||| || ||  |||||||||||||||||   ||| |||||||||||||||||||||||    
T  12641122 aacaactttgttgaacttgatggtgaagattgcatcaaacactatgagaaaaccatgggttacaaggcttggcatcttggtcca 12641205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 358 - 461
Target Start/End: Original strand, 12641285 - 12641388
Alignment:
Q  358 gttggctcaactcacaacaagttaactcagtgttgtacatatgttttggaagcttgaactatttctctgataaacaactatatgagattgcatgcgcaat 457  Q
    |||||||||| ||| | |||| ||| |||||||| |||||||||||||| ||| |    |||||||||||||||||||| || ||||||||  ||| |||    
T  12641285 gttggctcaattcaaagcaagataattcagtgttatacatatgttttgggagcatctcttatttctctgataaacaactttacgagattgcgagcggaat 12641384  T
Q  458 agaa 461  Q
    ||||    
T  12641385 agaa 12641388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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