View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18626_low_15 (Length: 276)
Name: NF18626_low_15
Description: NF18626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18626_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 1685231 - 1685330
Alignment:
| Q |
1 |
ttaacattgttattttattgaagctttgaaaactaatagcgtaagtgtatgtttttgaagtttatctttattaaaatcactatgagtttgatgaaatcac |
100 |
Q |
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| T |
1685231 |
ttaacatcgttattttattgaagcttttaagactaatagtgtaagtgtatgtttttgaagtttatctttaaaaaaatcaggatgagtttgatgaaatcac |
1685330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 105 - 251
Target Start/End: Original strand, 1685234 - 1685389
Alignment:
| Q |
105 |
acatcgttgtttcattgaagctttcaa-actaatagtgtaagtgtatgtttttgaagcttatctttaataaaatcataatgagtttgatgaaatcac--- |
200 |
Q |
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| T |
1685234 |
acatcgttattttattgaagcttttaagactaatagtgtaagtgtatgtttttgaagtttatctttaaaaaaatcaggatgagtttgatgaaatcactgt |
1685333 |
T |
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| Q |
201 |
-----ggttattttattttgttgaaacttctaaaaatcaattttacccaaattaga |
251 |
Q |
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| T |
1685334 |
gacattgttatttaattttattgaaacttctaaaaatcagtttttccgaaattaga |
1685389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 1695763 - 1695821
Alignment:
| Q |
1 |
ttaacattgttattttattgaagctttgaaaactaatagcgtaagtgtatgtttttgaa |
59 |
Q |
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| T |
1695763 |
ttaacattgttattttattgaagctttgaaaactaatagtgtaagtgtatgttattgaa |
1695821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 257
Target Start/End: Original strand, 1695817 - 1695858
Alignment:
| Q |
216 |
ttgaaacttctaaaaatcaattttacccaaattagagtgata |
257 |
Q |
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| T |
1695817 |
ttgaaacttctaaaaatcagttttacccaaattagagtgata |
1695858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 100
Target Start/End: Original strand, 31464753 - 31464782
Alignment:
| Q |
71 |
ttaaaatcactatgagtttgatgaaatcac |
100 |
Q |
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| T |
31464753 |
ttaaaatcactatgagtttgatgaaatcac |
31464782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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