View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18626_low_2 (Length: 618)
Name: NF18626_low_2
Description: NF18626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18626_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 430; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 117 - 602
Target Start/End: Original strand, 27925969 - 27926459
Alignment:
| Q |
117 |
attatttgttttatccattctactaaatattttatttggataaatagctacatacgagatatttttatcaaatgaagccaaaatcagatttggcgcgttg |
216 |
Q |
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| T |
27925969 |
attatttgttttattcattctactaaatattttatttggataaatagctacatacgagatatttttatgaaatgaagccaaaatcagatttggcgcgttg |
27926068 |
T |
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| Q |
217 |
aagtgaagatatttttgtatctaccaacaagccgtaccatattatataaggaccgttgaagtgaagccaaaatcaaaacactttgaaacgaaaccttttt |
316 |
Q |
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| T |
27926069 |
aagtgaagatatttttgtatctaccagcaagccgtaccatattatataaggaccgttgaagtgaagccaaaatcaaaacactttgaaacgaaaccttttt |
27926168 |
T |
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| Q |
317 |
ggcgcgcacaagttata--acccattcacctctcttcttagaacaacgatg---aaccagtctcctccttctagggttttggaatctctctattccattg |
411 |
Q |
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| T |
27926169 |
ggcgcgcacaagttatataacccattcacctctcttctcataacaacgatgatgaaccagtttcctccttctagggttttggaatctctccattccaatg |
27926268 |
T |
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| Q |
412 |
atattgcctcttcaaattctcaatcccacgagtttctcagttccggtaaaactattttctattcattttttccattgctcaaaaatttacacagttaaga |
511 |
Q |
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| T |
27926269 |
atattgcctcttcaaattctcaatcccacgagtttctcagttccggtaaaactattttctattcattctttccattgctcaaaaatttacacagttaaga |
27926368 |
T |
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| Q |
512 |
tctaagagcctgatgatcctattgttgatttaatttactgatgttgaaattctgtgtaattaagatcaatgttttcaatcatggatggaaa |
602 |
Q |
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| T |
27926369 |
tctaagagcctgatgatcctattgttgatttaatttactgatgttgaaattctgtgtaattaagatcaatgttttcaatcatggatggaaa |
27926459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 27924982 - 27925131
Alignment:
| Q |
1 |
tgaaaatataatatatctgttaaacaatnnnnnnntgtgataagaatataataaggagataataactttttttaatcataccctagannnnnnnnnnnnn |
100 |
Q |
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|||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
27924982 |
tgaaaatataatatatctgttaaacaataaaaaaatgcgataagaatataataatgagataataactttttttaatcataccctaga----------tat |
27925071 |
T |
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| Q |
101 |
nnnnngtttcagttaaattatttgttttatccattctactaaatattttatttggataaa |
160 |
Q |
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| T |
27925072 |
tttttgtttcagttaaattatttgttttatccattctactaaatattttatttggataaa |
27925131 |
T |
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