View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18626_low_20 (Length: 245)
Name: NF18626_low_20
Description: NF18626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18626_low_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 5228087 - 5228307
Alignment:
| Q |
1 |
acctctttttcttttattaataatgagcattttatatgcttcttgaaacagtgccnnnnnnnnttcaataaaccaatttgagttagaatttgttgcacgt |
100 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5228087 |
acctctttttcttttattaat---gagtattttatatgcttcttgaaacagtgccaaaaaaatttcaataaaccaatttgagttagaatttgttgcacgt |
5228183 |
T |
|
| Q |
101 |
aaccacctccttgatttcattcaatgcatacatgatttgatatttaaaagaattgaacttttcatcttcataatttcnnnnnnnnggatgaaatcttgaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5228184 |
aaccacctccttgatttcattcaatgcatacat-atttgatatttaaaagaattgaacttttcatcttcataatttcaaaaaaaa-gatgaaatcttgaa |
5228281 |
T |
|
| Q |
201 |
tgtgttcttcgtagcaccggatggaa |
226 |
Q |
| |
|
|||||||||||||||| ||||||||| |
|
|
| T |
5228282 |
tgtgttcttcgtagcatcggatggaa |
5228307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 26 - 229
Target Start/End: Complemental strand, 38138224 - 38138024
Alignment:
| Q |
26 |
agcattttatatgcttcttgaaacagtgccnnnnnnnntt-caataaaccaatttgagttagaatttgttgcacgtaaccacctccttgatttcattcaa |
124 |
Q |
| |
|
||||||||||||||||||||||||| |||| || |||||||||||||||||||| || || |||||||||||||||||||||||||||| || |
|
|
| T |
38138224 |
agcattttatatgcttcttgaaacaatgccaatttttttttcaataaaccaatttgagttataaatttttgcacgtaaccacctccttgatttcat--aa |
38138127 |
T |
|
| Q |
125 |
tgcatacatgatttgatatttaaaagaattgaacttttcatcttcataatttcnnnnnnnnggatgaaatcttgaatgtgttcttcgtagcaccggatgg |
224 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38138126 |
tgcatacatgatttgatatttaaaa-agttgaacttttcatcttcataattt-taaaaaaaggatgaaatcttgaatgtgttcttcgtagcaccagatgg |
38138029 |
T |
|
| Q |
225 |
aactg |
229 |
Q |
| |
|
||||| |
|
|
| T |
38138028 |
aactg |
38138024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 149
Target Start/End: Complemental strand, 38883823 - 38883753
Alignment:
| Q |
79 |
tgagttagaatttgttgcacgtaaccacctccttgatttcattcaatgcatacatgatttgatatttaaaa |
149 |
Q |
| |
|
||||||| ||||||||||| ||||||||| ||||||||| | ||||||||||| |||||||||||||||| |
|
|
| T |
38883823 |
tgagttacaatttgttgcatgtaaccacccccttgattttacccaatgcatacacgatttgatatttaaaa |
38883753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University