View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18626_low_23 (Length: 201)
Name: NF18626_low_23
Description: NF18626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18626_low_23 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 119; Significance: 5e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 20 - 182
Target Start/End: Original strand, 5228147 - 5228307
Alignment:
| Q |
20 |
ttcaataaaccaatttgagttagaatttgttgcacgtaaccacctccttgatttcattcaatgcatacatgatttgatatttaaaagaattgaacttttc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5228147 |
ttcaataaaccaatttgagttagaatttgttgcacgtaaccacctccttgatttcattcaatgcatacat-atttgatatttaaaagaattgaacttttc |
5228245 |
T |
|
| Q |
120 |
atcttcataatttcnnnnnnnnggatgaaatcttgaatgtgttcttcgtagcaccggatggaa |
182 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5228246 |
atcttcataatttcaaaaaaaa-gatgaaatcttgaatgtgttcttcgtagcatcggatggaa |
5228307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 38138185 - 38138024
Alignment:
| Q |
20 |
ttcaataaaccaatttgagttagaatttgttgcacgtaaccacctccttgatttcattcaatgcatacatgatttgatatttaaaagaattgaacttttc |
119 |
Q |
| |
|
|||||||||||||||||||||| || || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
38138185 |
ttcaataaaccaatttgagttataaatttttgcacgtaaccacctccttgatttcat--aatgcatacatgatttgatatttaaaa-agttgaacttttc |
38138089 |
T |
|
| Q |
120 |
atcttcataatttcnnnnnnnnggatgaaatcttgaatgtgttcttcgtagcaccggatggaactg |
185 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
38138088 |
atcttcataattt-taaaaaaaggatgaaatcttgaatgtgttcttcgtagcaccagatggaactg |
38138024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 38883823 - 38883753
Alignment:
| Q |
35 |
tgagttagaatttgttgcacgtaaccacctccttgatttcattcaatgcatacatgatttgatatttaaaa |
105 |
Q |
| |
|
||||||| ||||||||||| ||||||||| ||||||||| | ||||||||||| |||||||||||||||| |
|
|
| T |
38883823 |
tgagttacaatttgttgcatgtaaccacccccttgattttacccaatgcatacacgatttgatatttaaaa |
38883753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University