View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18626_low_5 (Length: 432)

Name: NF18626_low_5
Description: NF18626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18626_low_5
NF18626_low_5
[»] chr3 (26 HSPs)
chr3 (184-408)||(17439180-17439401)
chr3 (178-328)||(1744927-1745075)
chr3 (205-328)||(4022844-4022966)
chr3 (179-328)||(44450989-44451138)
chr3 (215-320)||(4026504-4026608)
chr3 (205-328)||(17132570-17132691)
chr3 (202-262)||(25321066-25321126)
chr3 (325-412)||(1745042-1745129)
chr3 (205-328)||(53589227-53589349)
chr3 (204-262)||(25466347-25466405)
chr3 (178-250)||(15987418-15987490)
chr3 (325-415)||(4026438-4026529)
chr3 (369-415)||(27718022-27718068)
chr3 (328-415)||(53589170-53589257)
chr3 (206-248)||(14132280-14132322)
chr3 (354-408)||(25321140-25321194)
chr3 (331-415)||(17132664-17132746)
chr3 (361-412)||(7536181-7536232)
chr3 (184-250)||(7536309-7536375)
chr3 (196-250)||(12144859-12144913)
chr3 (178-239)||(45280154-45280215)
chr3 (324-415)||(15987520-15987612)
chr3 (206-245)||(9101841-9101880)
chr3 (366-411)||(5495556-5495601)
chr3 (324-404)||(9101731-9101812)
chr3 (212-245)||(27718178-27718211)
[»] chr8 (29 HSPs)
chr8 (184-415)||(22450083-22450316)
chr8 (178-315)||(22455232-22455367)
chr8 (354-415)||(22455158-22455219)
chr8 (324-415)||(32352136-32352227)
chr8 (324-415)||(32368797-32368888)
chr8 (179-261)||(28291750-28291832)
chr8 (205-328)||(32352049-32352170)
chr8 (205-328)||(32368710-32368831)
chr8 (328-411)||(28291626-28291709)
chr8 (354-415)||(19709552-19709613)
chr8 (324-415)||(41652063-41652155)
chr8 (325-414)||(5892548-5892640)
chr8 (205-261)||(28862646-28862702)
chr8 (206-257)||(5892460-5892511)
chr8 (210-245)||(18672349-18672384)
chr8 (207-250)||(41652189-41652232)
chr8 (211-245)||(13110082-13110116)
chr8 (211-245)||(22713846-22713880)
chr8 (369-415)||(23355451-23355497)
chr8 (212-249)||(10600377-10600414)
chr8 (210-245)||(11030506-11030541)
chr8 (206-245)||(24680982-24681021)
chr8 (369-411)||(10600248-10600290)
chr8 (211-245)||(27123831-27123865)
chr8 (365-402)||(13110204-13110241)
chr8 (179-240)||(15341111-15341172)
chr8 (179-240)||(15430176-15430237)
chr8 (179-240)||(15521480-15521541)
chr8 (178-242)||(18847272-18847336)
[»] chr4 (15 HSPs)
chr4 (178-363)||(16288578-16288762)
chr4 (178-317)||(24476146-24476282)
chr4 (208-322)||(24924739-24924852)
chr4 (178-296)||(6244073-6244187)
chr4 (361-416)||(12568123-12568178)
chr4 (220-317)||(18553176-18553270)
chr4 (367-415)||(24924868-24924916)
chr4 (369-415)||(4697469-4697515)
chr4 (178-262)||(14540404-14540488)
chr4 (211-245)||(6337877-6337911)
chr4 (212-245)||(4697344-4697377)
chr4 (361-400)||(16675093-16675132)
chr4 (206-245)||(41457417-41457456)
chr4 (206-243)||(9354661-9354698)
chr4 (212-245)||(16674976-16675009)
[»] chr2 (18 HSPs)
chr2 (178-322)||(17162119-17162261)
chr2 (192-328)||(31000013-31000146)
chr2 (326-415)||(17636660-17636751)
chr2 (326-415)||(17676518-17676609)
chr2 (325-413)||(17162057-17162146)
chr2 (178-262)||(13370220-13370304)
chr2 (207-287)||(16467452-16467531)
chr2 (369-415)||(21498176-21498222)
chr2 (358-415)||(2482008-2482065)
chr2 (361-402)||(31404157-31404198)
chr2 (178-241)||(15438237-15438300)
chr2 (192-262)||(21625238-21625308)
chr2 (330-408)||(30999963-31000041)
chr2 (185-230)||(20515755-20515800)
chr2 (211-248)||(31404279-31404316)
chr2 (324-416)||(32890346-32890441)
chr2 (233-296)||(35405971-35406033)
chr2 (370-415)||(15438098-15438143)
[»] chr6 (16 HSPs)
chr6 (205-328)||(34992227-34992350)
chr6 (179-264)||(6038811-6038896)
chr6 (178-249)||(28712221-28712292)
chr6 (355-415)||(17352686-17352746)
chr6 (369-415)||(4031094-4031140)
chr6 (365-415)||(28712369-28712419)
chr6 (196-250)||(1469442-1469494)
chr6 (178-240)||(24154357-24154419)
chr6 (361-402)||(16793272-16793313)
chr6 (178-242)||(242231-242295)
chr6 (345-411)||(19723938-19724005)
chr6 (211-245)||(9404620-9404654)
chr6 (364-402)||(14763042-14763080)
chr6 (211-245)||(14763167-14763201)
chr6 (211-245)||(17296399-17296433)
chr6 (211-243)||(18713597-18713629)
[»] chr7 (21 HSPs)
chr7 (205-328)||(11994040-11994163)
chr7 (204-322)||(12468793-12468908)
chr7 (325-415)||(1545684-1545774)
chr7 (331-408)||(7948081-7948158)
chr7 (345-415)||(25621162-25621233)
chr7 (208-328)||(1545741-1545859)
chr7 (179-254)||(15682684-15682759)
chr7 (178-246)||(28037010-28037078)
chr7 (326-415)||(12468882-12468970)
chr7 (211-248)||(18084173-18084210)
chr7 (206-245)||(9022737-9022776)
chr7 (361-415)||(7524802-7524855)
chr7 (369-415)||(18046385-18046431)
chr7 (178-250)||(4979021-4979093)
chr7 (210-245)||(7524926-7524961)
chr7 (202-296)||(14628922-14629014)
chr7 (365-416)||(18084295-18084346)
chr7 (369-408)||(28037163-28037202)
chr7 (354-415)||(15682827-15682889)
chr7 (211-248)||(10649464-10649501)
chr7 (206-242)||(41131797-41131833)
[»] chr5 (23 HSPs)
chr5 (179-328)||(9422951-9423100)
chr5 (324-415)||(21390611-21390704)
chr5 (178-328)||(10235893-10236040)
chr5 (326-415)||(10236008-10236097)
chr5 (178-250)||(22987574-22987646)
chr5 (354-415)||(22987712-22987773)
chr5 (192-328)||(20646328-20646470)
chr5 (330-415)||(30985601-30985686)
chr5 (324-411)||(24309004-24309092)
chr5 (324-411)||(24364234-24364322)
chr5 (368-415)||(24663550-24663597)
chr5 (367-412)||(22848014-22848059)
chr5 (178-242)||(28619441-28619505)
chr5 (210-245)||(19926933-19926968)
chr5 (206-328)||(24308926-24309038)
chr5 (206-328)||(24364288-24364400)
chr5 (211-245)||(19924206-19924240)
chr5 (192-266)||(21166352-21166426)
chr5 (211-245)||(25667468-25667502)
chr5 (179-225)||(22849430-22849476)
chr5 (211-245)||(24878243-24878277)
chr5 (369-415)||(25667330-25667376)
chr5 (365-402)||(24878367-24878404)
[»] chr1 (16 HSPs)
chr1 (205-328)||(13966273-13966395)
chr1 (215-320)||(13962747-13962851)
chr1 (328-415)||(24633364-24633451)
chr1 (325-415)||(13962826-13962917)
chr1 (212-293)||(11821696-11821775)
chr1 (196-253)||(24633936-24633993)
chr1 (179-250)||(33379533-33379604)
chr1 (365-415)||(44787404-44787454)
chr1 (211-245)||(17615146-17615180)
chr1 (211-245)||(20866109-20866143)
chr1 (208-241)||(16083531-16083564)
chr1 (345-415)||(25018622-25018693)
chr1 (201-264)||(22785253-22785316)
chr1 (369-416)||(33379406-33379453)
chr1 (204-289)||(4521749-4521832)
chr1 (204-250)||(44787530-44787576)
[»] scaffold0167 (2 HSPs)
scaffold0167 (178-250)||(694-766)
scaffold0167 (369-416)||(10345-10392)
[»] scaffold0148 (1 HSPs)
scaffold0148 (207-317)||(22877-22984)
[»] scaffold0003 (1 HSPs)
scaffold0003 (184-246)||(89617-89679)
[»] scaffold0337 (2 HSPs)
scaffold0337 (211-245)||(4435-4469)
scaffold0337 (211-245)||(17110-17144)
[»] scaffold0320 (1 HSPs)
scaffold0320 (369-415)||(6392-6438)
[»] scaffold0024 (1 HSPs)
scaffold0024 (314-415)||(38957-39057)
[»] scaffold0142 (1 HSPs)
scaffold0142 (213-245)||(20431-20463)
[»] scaffold0039 (1 HSPs)
scaffold0039 (192-245)||(33435-33488)


Alignment Details
Target: chr3 (Bit Score: 126; Significance: 8e-65; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 184 - 408
Target Start/End: Complemental strand, 17439401 - 17439180
Alignment:
Q  184 caatcttcttccagaaattgtatgaatgttcatcaaattcataggttgctttatgaacaagatgaagaaaactgttttttggtatgaaggcaactgtctt 283  Q
    ||||||| || |||||||||||||||||||||||| ||||||||||||  |||||||||||| |||||||| ||||||||| |||||||  |  ||||||    
T  17439401 caatcttttttcagaaattgtatgaatgttcatcatattcataggttggattatgaacaagaagaagaaaattgttttttg-tatgaag--atttgtctt 17439305  T
Q  284 tcgacagaaatcagtaaataaaatgcaagtaaaagacttgaaagtaaagaaaatacaagtgaaaggctttaaagtttaaatgcagaaacttaaagaaaag 383  Q
    |||||| | ||||||||||||||||||||||||||||||||| |||||| |||  ||||| |||| |||||| ||||||||| |||||||||||||||||    
T  17439304 tcgacaaagatcagtaaataaaatgcaagtaaaagacttgaacgtaaaggaaaagcaagtaaaagactttaacgtttaaatgtagaaacttaaagaaaag 17439205  T
Q  384 gtaaattgaattgcattaatgtaaa 408  Q
    |||||||| ||||||||||||||||    
T  17439204 gtaaattgcattgcattaatgtaaa 17439180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 178 - 328
Target Start/End: Original strand, 1744927 - 1745075
Alignment:
Q  178 gttgtacaatcttcttccagaaattgtatgaatgttcatcaaattcataggttgctttatgaacaagatgaagaaaactgttttttggtatgaaggcaac 277  Q
    ||||| ||||||| || || ||| ||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||  ||||||||  ||     
T  1744927 gttgtgcaatcttttttcaaaaaatgtatgaatgttcatcatatttataggttgctttataaacaagatgaagaaaactgttttt--gtatgaagataat 1745024  T
Q  278 tgtctttcgacagaaatcagtaaataaaatgcaagtaaaagacttgaaagt 328  Q
    |||||||||||||| || |||||| ||||||||||||||| |||| |||||    
T  1745025 tgtctttcgacagagataagtaaagaaaatgcaagtaaaatacttaaaagt 1745075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 205 - 328
Target Start/End: Complemental strand, 4022966 - 4022844
Alignment:
Q  205 atgaatgttcatcaaattcataggttgctttatgaacaagatgaagaaaactgttttttggtatgaaggcaactgtctttcgacagaaatcagtaaataa 304  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||| ||||||||  || ||||||| |||||| || |||||| ||    
T  4022966 atgaatgttcatcatattcataggttgttttatgaacaagatgaagaaaaccgtttttt-gtatgaagataagtgtctttggacagagataagtaaagaa 4022868  T
Q  305 aatgcaagtaaaagacttgaaagt 328  Q
    |||||||||||||||||| |||||    
T  4022867 aatgcaagtaaaagacttaaaagt 4022844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 179 - 328
Target Start/End: Complemental strand, 44451138 - 44450989
Alignment:
Q  179 ttgtacaatcttcttccagaaattgtatgaatgttcatcaaattcataggttgctttatgaacaagatgaagaaaactgttttttggtatgaaggcaact 278  Q
    |||| ||||||| ||||| ||| |  |||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||| |||||||| || |    
T  44451138 ttgtgcaatctttttccataaaatacatgaatgttcatcatattcataggttgctttatgaacaagatgaataaaaatgttttttgttatgaaggtaa-t 44451040  T
Q  279 gtctttcgacagaaatcagtaaataaaatgcaagta-aaagacttgaaagt 328  Q
    ||||||||||||||| || |||  |||||||||||| |||||||| |||||    
T  44451039 gtctttcgacagaaagcaataatgaaaatgcaagtataaagacttaaaagt 44450989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 215 - 320
Target Start/End: Complemental strand, 4026608 - 4026504
Alignment:
Q  215 atcaaattcataggttgctttatgaacaagatgaagaaaactgttttttggtatgaaggcaactgtctttcgacagaaatcagtaaataaaatgcaagta 314  Q
    |||| |||||||||||| ||||||||||||| ||||||||||||||||| ||||||||  || | |||||||||||| || |||||| ||||||||||||    
T  4026608 atcatattcataggttgttttatgaacaagaagaagaaaactgtttttt-gtatgaagataattctctttcgacagagataagtaaagaaaatgcaagta 4026510  T
Q  315 aaagac 320  Q
    ||||||    
T  4026509 aaagac 4026504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 205 - 328
Target Start/End: Original strand, 17132570 - 17132691
Alignment:
Q  205 atgaatgttcatcaaattcataggttgctttatgaacaagatgaagaaaactgttttttggtatgaaggcaactgtctttcgacagaaatcagtaaataa 304  Q
    |||||| ||||||| |||||||| || |||||||||||||||||| |||||| |||||  ||||||||  ||||||||||||||| |||||| |  | ||    
T  17132570 atgaatattcatcatattcatagtttcctttatgaacaagatgaataaaactattttt--gtatgaagataactgtctttcgacataaatcaatgtagaa 17132667  T
Q  305 aatgcaagtaaaagacttgaaagt 328  Q
    |||||||||||||||||| |||||    
T  17132668 aatgcaagtaaaagacttaaaagt 17132691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 25321066 - 25321126
Alignment:
Q  202 tgtatgaatgttcatcaaattcataggttgctttatgaacaagatgaagaaaactgttttt 262  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  25321066 tgtatgaatgttcatcatattcataggttgctttatgaacaagatgaagaaaactgctttt 25321126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 325 - 412
Target Start/End: Original strand, 1745042 - 1745129
Alignment:
Q  325 aagtaaagaaaatacaagtgaaaggctttaaagtttaaatgcagaaacttaaagaaaaggtaaattgaattgcattaatgtaaaggtg 412  Q
    ||||||||||||| ||||| |||  ||| |||||||||| |||||||||| || ||||||||||||| ||||||||||||||||||||    
T  1745042 aagtaaagaaaatgcaagtaaaatacttaaaagtttaaacgcagaaacttgaacaaaaggtaaattgcattgcattaatgtaaaggtg 1745129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 205 - 328
Target Start/End: Complemental strand, 53589349 - 53589227
Alignment:
Q  205 atgaatgttcatcaaattcataggttgctttatgaacaagatgaagaaaactgttttttggtatgaaggcaactgtctttcgacagaaatcagtaaataa 304  Q
    |||||||||||||| ||||||| |||||||||||||||||||||| |||||  |||||| ||||||||  || || ||||||||||| |||| |||| ||    
T  53589349 atgaatgttcatcatattcatatgttgctttatgaacaagatgaataaaaccatttttt-gtatgaagataattgcctttcgacagagatcaataaagaa 53589251  T
Q  305 aatgcaagtaaaagacttgaaagt 328  Q
     || |||||||| ||||| |||||    
T  53589250 tattcaagtaaatgactttaaagt 53589227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 204 - 262
Target Start/End: Original strand, 25466347 - 25466405
Alignment:
Q  204 tatgaatgttcatcaaattcataggttgctttatgaacaagatgaagaaaactgttttt 262  Q
    ||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||    
T  25466347 tatgaatgttcatcatattcataggttgttttacgaacaagatgaagaaaactgttttt 25466405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 15987418 - 15987490
Alignment:
Q  178 gttgtacaatcttcttccagaaattgtatgaatgttcatcaaattcataggttgctttatgaacaagatgaag 250  Q
    ||||| ||||||| ||||| ||| | |||||||||||||||  ||||||||||||||||||||||||||||||    
T  15987418 gttgtgcaatctttttccataaaatatatgaatgttcatcattttcataggttgctttatgaacaagatgaag 15987490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 325 - 415
Target Start/End: Complemental strand, 4026529 - 4026438
Alignment:
Q  325 aagtaaagaaaatacaagtgaaaggctttaaagtttaaatgcagaaactt-aaagaaaaggtaaattgaattgcattaatgtaaaggtggtt 415  Q
    ||||||||||||| ||||| |||| | | |||||||||| ||| |||||| |||||||| |||||||| ||||||||| |||||||||||||    
T  4026529 aagtaaagaaaatgcaagtaaaagacatcaaagtttaaacgcataaactttaaagaaaatgtaaattgcattgcattagtgtaaaggtggtt 4026438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 369 - 415
Target Start/End: Complemental strand, 27718068 - 27718022
Alignment:
Q  369 aaacttaaagaaaaggtaaattgaattgcattaatgtaaaggtggtt 415  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  27718068 aaacttaaagaaaaggtaaattgcattgcattaatgtaaaggtggtt 27718022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 328 - 415
Target Start/End: Complemental strand, 53589257 - 53589170
Alignment:
Q  328 taaagaaaatacaagtgaaaggctttaaagtttaaatgcagaaacttaaagaaaaggtaaattgaattgcattaatgtaaaggtggtt 415  Q
    ||||||| || ||||| || | |||||||||||||| | |||||||||||||||||| |||||| ||||||||  |||||| ||||||    
T  53589257 taaagaatattcaagtaaatgactttaaagtttaaacgtagaaacttaaagaaaaggcaaattgcattgcatttgtgtaaaagtggtt 53589170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 206 - 248
Target Start/End: Complemental strand, 14132322 - 14132280
Alignment:
Q  206 tgaatgttcatcaaattcataggttgctttatgaacaagatga 248  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  14132322 tgaatgttcatcaaattcataggtttctttatgaacaagatga 14132280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 354 - 408
Target Start/End: Original strand, 25321140 - 25321194
Alignment:
Q  354 aaagtttaaatgcagaaacttaaagaaaaggtaaattgaattgcattaatgtaaa 408  Q
    |||||||||| |||||||||||||||||| |||||||  ||||||||||||||||    
T  25321140 aaagtttaaacgcagaaacttaaagaaaatgtaaattacattgcattaatgtaaa 25321194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 331 - 415
Target Start/End: Original strand, 17132664 - 17132746
Alignment:
Q  331 agaaaatacaagtgaaaggctttaaagtttaaatgcagaaacttaaagaaaaggtaaattgaattgcattaatgtaaaggtggtt 415  Q
    ||||||| ||||| |||| ||| |||||| |||||||||| |||||||||||| ||||||  |||||||||| ||||||||||||    
T  17132664 agaaaatgcaagtaaaagacttaaaagttaaaatgcagaa-cttaaagaaaag-taaatttcattgcattaaagtaaaggtggtt 17132746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 361 - 412
Target Start/End: Complemental strand, 7536232 - 7536181
Alignment:
Q  361 aaatgcagaaacttaaagaaaaggtaaattgaattgcattaatgtaaaggtg 412  Q
    ||||||| |||||||||| || ||||||||| ||||||||||||||||||||    
T  7536232 aaatgcataaacttaaaggaagggtaaattgtattgcattaatgtaaaggtg 7536181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 250
Target Start/End: Complemental strand, 7536375 - 7536309
Alignment:
Q  184 caatcttcttccagaaattgtatgaatgttcatcaaattcataggttgctttatgaacaagatgaag 250  Q
    ||||||| ||| ||||| |||||||||  ||| ||| || |||||||||||||||||||||||||||    
T  7536375 caatctttttctagaaaatgtatgaatactcaccaagtttataggttgctttatgaacaagatgaag 7536309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 12144859 - 12144913
Alignment:
Q  196 agaaattgtatgaatgttcatcaaattcataggttgctttatgaacaagatgaag 250  Q
    ||||| ||| ||||||||||||| ||| |||| ||||||||||||||||||||||    
T  12144859 agaaagtgtttgaatgttcatcatatttatagattgctttatgaacaagatgaag 12144913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 178 - 239
Target Start/End: Complemental strand, 45280215 - 45280154
Alignment:
Q  178 gttgtacaatcttcttccagaaattgtatgaatgttcatcaaattcataggttgctttatga 239  Q
    ||||| ||||||| ||||||||| | |||  |||||||||| ||||||||||||||||||||    
T  45280215 gttgtgcaatctttttccagaaaatatatatatgttcatcatattcataggttgctttatga 45280154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 324 - 415
Target Start/End: Original strand, 15987520 - 15987612
Alignment:
Q  324 aaagtaaagaaaatacaagtgaaaggctttaaagttta-aatgcagaaacttaaagaaaaggtaaattgaattgcattaatgtaaaggtggtt 415  Q
    ||||||||| |||| ||||| |||| ||| |||||||| ||  || |||||| |||||||||||  ||| |||||||||||||||| ||||||    
T  15987520 aaagtaaaggaaatgcaagtaaaagacttaaaagtttagaacacataaactttaagaaaaggtattttgcattgcattaatgtaaatgtggtt 15987612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 245
Target Start/End: Complemental strand, 9101880 - 9101841
Alignment:
Q  206 tgaatgttcatcaaattcataggttgctttatgaacaaga 245  Q
    |||||||| |||| ||||||||||||||||||||||||||    
T  9101880 tgaatgtttatcatattcataggttgctttatgaacaaga 9101841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 411
Target Start/End: Original strand, 5495556 - 5495601
Alignment:
Q  366 cagaaacttaaagaaaaggtaaattgaattgcattaatgtaaaggt 411  Q
    |||||||||||||||||| ||||||| ||||||||||  |||||||    
T  5495556 cagaaacttaaagaaaagataaattgcattgcattaaaataaaggt 5495601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 404
Target Start/End: Complemental strand, 9101812 - 9101731
Alignment:
Q  324 aaagtaaagaaaatacaagtgaaaggctttaaagtttaaat-gcagaaacttaaagaaaaggtaaattgaattgcattaatg 404  Q
    |||||||| |||||  |||| || | ||| ||||||||||  |||| |||||||||||||| ||||||| ||||||||||||    
T  9101812 aaagtaaaaaaaatgtaagtaaatgacttaaaagtttaaaaagcagcaacttaaagaaaagttaaattgcattgcattaatg 9101731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 245
Target Start/End: Complemental strand, 27718211 - 27718178
Alignment:
Q  212 ttcatcaaattcataggttgctttatgaacaaga 245  Q
    |||||||||||||||||||||||||||| |||||    
T  27718211 ttcatcaaattcataggttgctttatgagcaaga 27718178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 1e-54; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 184 - 415
Target Start/End: Complemental strand, 22450316 - 22450083
Alignment:
Q  184 caatcttcttccagaaattgtatgaatgttcatcaaattcataggttgctttatgaacaagatgaagaaaactgttttttggtatgaaggcaactgtctt 283  Q
    ||||||| ||||| ||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||| ||||||  ||||||   |||||||||    
T  22450316 caatctttttccaaaaattgtatgaatcttcatcatattcataggttgttttatgaacaagatgaagaaaactatttttt-atatgaaaataactgtctt 22450218  T
Q  284 tcgacagaaatcagtaaataaaatgcaagtaaaagacttgaaagtaa---agaaaatacaagtgaaaggctttaaagtttaaatgcagaaacttaaagaa 380  Q
    |||||||| |||||||||  |||  ||||||||||||||||||||||   | ||||| ||||| ||||  ||||||||||||| ||| ||||||||||||    
T  22450217 tcgacagagatcagtaaaggaaacacaagtaaaagacttgaaagtaaaataaaaaatgcaagtaaaagattttaaagtttaaacgcataaacttaaagaa 22450118  T
Q  381 aaggtaaattgaattgcattaatgtaaaggtggtt 415  Q
    | ||||||||| ||||||||||||| || ||||||    
T  22450117 atggtaaattgcattgcattaatgttaatgtggtt 22450083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 178 - 315
Target Start/End: Complemental strand, 22455367 - 22455232
Alignment:
Q  178 gttgtacaatcttcttccagaaattgtatgaatgttcatcaaattcataggttgctttatgaacaagatgaagaaaactgttttttggtatgaaggcaac 277  Q
    ||||| ||||||| ||||| ||| |  |||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||  |||||||   |||    
T  22455367 gttgtgcaatctttttccaaaaagtacatgaatgttcatcatattcataggttgctttatgaataagatgaagaaaaccgttttt--gtatgaaaataac 22455270  T
Q  278 tgtctttcgacagaaatcagtaaataaaatgcaagtaa 315  Q
    |||||||| ||| | ||  |||||||||||||||||||    
T  22455269 tgtctttcaacatagatttgtaaataaaatgcaagtaa 22455232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 354 - 415
Target Start/End: Complemental strand, 22455219 - 22455158
Alignment:
Q  354 aaagtttaaatgcagaaacttaaagaaaaggtaaattgaattgcattaatgtaaaggtggtt 415  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  22455219 aaagtttaaacgcagaaacttaaagaaaaggtaaattgcattgcattaatgtaaaggtggtt 22455158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 324 - 415
Target Start/End: Original strand, 32352136 - 32352227
Alignment:
Q  324 aaagtaaagaaaatacaagtgaaaggctttaaagtttaaatgcagaaacttaaagaaaaggtaaattgaattgcattaatgtaaaggtggtt 415  Q
    |||||||||||||| ||||| |||||||| |||||||||| ||| |||||| |||||||| | ||||| ||| |||||||||||| ||||||    
T  32352136 aaagtaaagaaaatgcaagtaaaaggcttaaaagtttaaacgcaaaaacttgaagaaaagttcaattgtattacattaatgtaaaagtggtt 32352227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 324 - 415
Target Start/End: Original strand, 32368797 - 32368888
Alignment:
Q  324 aaagtaaagaaaatacaagtgaaaggctttaaagtttaaatgcagaaacttaaagaaaaggtaaattgaattgcattaatgtaaaggtggtt 415  Q
    |||||||||||||| ||||| |||||||| |||||||||| ||| |||||| |||||||| | ||||| ||| |||||||||||| ||||||    
T  32368797 aaagtaaagaaaatgcaagtaaaaggcttaaaagtttaaacgcaaaaacttgaagaaaagttcaattgtattacattaatgtaaaagtggtt 32368888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 179 - 261
Target Start/End: Complemental strand, 28291832 - 28291750
Alignment:
Q  179 ttgtacaatcttcttccagaaattgtatgaatgttcatcaaattcataggttgctttatgaacaagatgaagaaaactgtttt 261  Q
    |||| ||||||| ||||| ||| || || ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||    
T  28291832 ttgtgcaatctttttccataaaatgcataaatgttcatcatattcataggttactttatgaacaagatgaagaaaattgtttt 28291750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 205 - 328
Target Start/End: Original strand, 32352049 - 32352170
Alignment:
Q  205 atgaatgttcatcaaattcataggttgctttatgaacaagatgaagaaaactgttttttggtatgaaggcaactgtctttcgacagaaatcagtaaataa 304  Q
    |||||||||| ||| |||||||||||  |||||||||||||||||| |||||||||||  ||||||||  || ||||||| || | | |  |||||| ||    
T  32352049 atgaatgttcgtcatattcataggttaatttatgaacaagatgaaggaaactgttttt--gtatgaagataattgtcttttgaaaaagaaaagtaaagaa 32352146  T
Q  305 aatgcaagtaaaagacttgaaagt 328  Q
    |||||||||||||| ||| |||||    
T  32352147 aatgcaagtaaaaggcttaaaagt 32352170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 205 - 328
Target Start/End: Original strand, 32368710 - 32368831
Alignment:
Q  205 atgaatgttcatcaaattcataggttgctttatgaacaagatgaagaaaactgttttttggtatgaaggcaactgtctttcgacagaaatcagtaaataa 304  Q
    |||||||||| ||| |||||||||||  |||||||||||||||||| |||||||||||  ||||||||  || ||||||| || | | |  |||||| ||    
T  32368710 atgaatgttcgtcatattcataggttaatttatgaacaagatgaaggaaactgttttt--gtatgaagataattgtcttttgaaaaagaaaagtaaagaa 32368807  T
Q  305 aatgcaagtaaaagacttgaaagt 328  Q
    |||||||||||||| ||| |||||    
T  32368808 aatgcaagtaaaaggcttaaaagt 32368831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 328 - 411
Target Start/End: Complemental strand, 28291709 - 28291626
Alignment:
Q  328 taaagaaaatacaagtgaaaggctttaaagtttaaatgcagaaacttaaagaaaaggtaaattgaattgcattaatgtaaaggt 411  Q
    ||||| |||| ||||| |||| ||| |||||||||| ||| ||| ||||||||||| ||||||| |||||||||||||||||||    
T  28291709 taaaggaaatgcaagtaaaagacttaaaagtttaaacgcaaaaatttaaagaaaagctaaattgcattgcattaatgtaaaggt 28291626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 354 - 415
Target Start/End: Complemental strand, 19709613 - 19709552
Alignment:
Q  354 aaagtttaaatgcagaaacttaaagaaaaggtaaattgaattgcattaatgtaaaggtggtt 415  Q
    |||| ||||||||| ||| ||||||||||||||||||| |||||||||||||||| ||||||    
T  19709613 aaaggttaaatgcataaatttaaagaaaaggtaaattgcattgcattaatgtaaatgtggtt 19709552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 324 - 415
Target Start/End: Complemental strand, 41652155 - 41652063
Alignment:
Q  324 aaagtaaagaaaatacaagtgaaaggctttaaagtttaaatgc-agaaacttaaagaaaaggtaaattgaattgcattaatgtaaaggtggtt 415  Q
    ||||||||| |||| ||||| |||| ||| |||||||||| |  |||||||||||||||||||| |||  ||| |||||||||||||||||||    
T  41652155 aaagtaaaggaaatgcaagtaaaagacttaaaagtttaaaagggagaaacttaaagaaaaggtagattacattacattaatgtaaaggtggtt 41652063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 325 - 414
Target Start/End: Original strand, 5892548 - 5892640
Alignment:
Q  325 aagtaaagaaaatacaagtgaaa--ggctttaaagttt-aaatgcagaaacttaaagaaaaggtaaattgaattgcattaatgtaaaggtggt 414  Q
    ||||||||||||| ||||| |||  | ||||||| ||| ||| ||| |||||||||||||| |||||||| |||||||||||||||| |||||    
T  5892548 aagtaaagaaaatgcaagtaaaaaagactttaaaattttaaacgcataaacttaaagaaaatgtaaattgcattgcattaatgtaaatgtggt 5892640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 205 - 261
Target Start/End: Complemental strand, 28862702 - 28862646
Alignment:
Q  205 atgaatgttcatcaaattcataggttgctttatgaacaagatgaagaaaactgtttt 261  Q
    |||||||||||||| |||||||| || ||||| |||||||||||| |||||||||||    
T  28862702 atgaatgttcatcatattcatagtttactttaagaacaagatgaataaaactgtttt 28862646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 206 - 257
Target Start/End: Original strand, 5892460 - 5892511
Alignment:
Q  206 tgaatgttcatcaaattcataggttgctttatgaacaagatgaagaaaactg 257  Q
    ||||||||||||| ||||||||||| |||||||||||||||||  |||||||    
T  5892460 tgaatgttcatcatattcataggttactttatgaacaagatgagtaaaactg 5892511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 210 - 245
Target Start/End: Complemental strand, 18672384 - 18672349
Alignment:
Q  210 tgttcatcaaattcataggttgctttatgaacaaga 245  Q
    ||||||||||||||||||||||||||||||||||||    
T  18672384 tgttcatcaaattcataggttgctttatgaacaaga 18672349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 207 - 250
Target Start/End: Complemental strand, 41652232 - 41652189
Alignment:
Q  207 gaatgttcatcaaattcataggttgctttatgaacaagatgaag 250  Q
    |||||||||||| |||||||||||||||||||||||||| ||||    
T  41652232 gaatgttcatcatattcataggttgctttatgaacaagacgaag 41652189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 245
Target Start/End: Original strand, 13110082 - 13110116
Alignment:
Q  211 gttcatcaaattcataggttgctttatgaacaaga 245  Q
    |||||||||||||||||||||||||||||||||||    
T  13110082 gttcatcaaattcataggttgctttatgaacaaga 13110116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 245
Target Start/End: Complemental strand, 22713880 - 22713846
Alignment:
Q  211 gttcatcaaattcataggttgctttatgaacaaga 245  Q
    |||||||||||||||||||||||||||||||||||    
T  22713880 gttcatcaaattcataggttgctttatgaacaaga 22713846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 415
Target Start/End: Original strand, 23355451 - 23355497
Alignment:
Q  369 aaacttaaagaaaaggtaaattgaattgcattaatgtaaaggtggtt 415  Q
    |||||||||||| | |||||||| |||||||||||||||||||||||    
T  23355451 aaacttaaagaatacgtaaattgcattgcattaatgtaaaggtggtt 23355497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 212 - 249
Target Start/End: Complemental strand, 10600414 - 10600377
Alignment:
Q  212 ttcatcaaattcataggttgctttatgaacaagatgaa 249  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  10600414 ttcatcaaattcataggttactttatgaacaagatgaa 10600377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 245
Target Start/End: Original strand, 11030506 - 11030541
Alignment:
Q  210 tgttcatcaaattcataggttgctttatgaacaaga 245  Q
    ||||| ||||||||||||||||||||||||||||||    
T  11030506 tgttcgtcaaattcataggttgctttatgaacaaga 11030541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 245
Target Start/End: Complemental strand, 24681021 - 24680982
Alignment:
Q  206 tgaatgttcatcaaattcataggttgctttatgaacaaga 245  Q
    ||||||||||||||||| |||||||| |||||||||||||    
T  24681021 tgaatgttcatcaaattgataggttgatttatgaacaaga 24680982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 411
Target Start/End: Complemental strand, 10600290 - 10600248
Alignment:
Q  369 aaacttaaagaaaaggtaaattgaattgcattaatgtaaaggt 411  Q
    |||||||||| |||||||||||| |||||||||| ||||||||    
T  10600290 aaacttaaagtaaaggtaaattgcattgcattaaagtaaaggt 10600248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 245
Target Start/End: Complemental strand, 27123865 - 27123831
Alignment:
Q  211 gttcatcaaattcataggttgctttatgaacaaga 245  Q
    |||||||||||||||||||| ||||||||||||||    
T  27123865 gttcatcaaattcataggtttctttatgaacaaga 27123831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 402
Target Start/End: Original strand, 13110204 - 13110241
Alignment:
Q  365 gcagaaacttaaagaaaaggtaaattgaattgcattaa 402  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  13110204 gcagaaacttaaagaaaagataaattgcattgcattaa 13110241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 240
Target Start/End: Complemental strand, 15341172 - 15341111
Alignment:
Q  179 ttgtacaatcttcttccagaaattgtatgaatgttcatcaaattcataggttgctttatgaa 240  Q
    |||| ||||| | ||||||||| |  |||| ||||||||| |||||||||||||||||||||    
T  15341172 ttgtgcaatcattttccagaaaatacatgagtgttcatcatattcataggttgctttatgaa 15341111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 240
Target Start/End: Complemental strand, 15430237 - 15430176
Alignment:
Q  179 ttgtacaatcttcttccagaaattgtatgaatgttcatcaaattcataggttgctttatgaa 240  Q
    |||| ||||| | ||||||||| |  |||| ||||||||| |||||||||||||||||||||    
T  15430237 ttgtgcaatcattttccagaaaatacatgagtgttcatcatattcataggttgctttatgaa 15430176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 240
Target Start/End: Complemental strand, 15521541 - 15521480
Alignment:
Q  179 ttgtacaatcttcttccagaaattgtatgaatgttcatcaaattcataggttgctttatgaa 240  Q
    |||| ||||| | ||||||||| |  |||| ||||||||| |||||||||||||||||||||    
T  15521541 ttgtgcaatcattttccagaaaatacatgagtgttcatcatattcataggttgctttatgaa 15521480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 18847272 - 18847336
Alignment:
Q  178 gttgtacaatcttcttccagaaattgtatgaatgttcatcaaattcataggttgctttatgaaca 242  Q
    ||||| ||||||| ||||| ||| |  |||||||||||  | |||||||||||||||||||||||    
T  18847272 gttgtgcaatctttttccaaaaaatacatgaatgttcaatatattcataggttgctttatgaaca 18847336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 4e-48; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 178 - 363
Target Start/End: Original strand, 16288578 - 16288762
Alignment:
Q  178 gttgtacaatcttcttccagaaattgtatgaatgttcatcaaattcataggttgctttatgaacaagatgaagaaaactgttttttggtatgaaggcaac 277  Q
    ||||| ||||||| ||||||||| ||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||| ||||| |||| |||  |||    
T  16288578 gttgtgcaatctttttccagaaagtgtatgattgttcatcaaattcataggttgttttatgagcaagatgaagaaaactg-tttttcgtataaagataac 16288676  T
Q  278 tgtctttcgacagaaatcagtaaataaaatgcaagtaaaagacttgaaagtaaagaaaatacaagtgaaaggctttaaagtttaaa 363  Q
    |  || |||||||| ||||||||| ||||||||||||||| ||||||||||||||||||| ||||| |||  ||||||||||||||    
T  16288677 tccctatcgacagagatcagtaaaaaaaatgcaagtaaaacacttgaaagtaaagaaaatgcaagtaaaatactttaaagtttaaa 16288762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 178 - 317
Target Start/End: Original strand, 24476146 - 24476282
Alignment:
Q  178 gttgtacaatcttcttccagaaattgtatgaatgttcatcaaattcataggttgctttatgaacaagatgaagaaaactgttttttggtatgaaggcaac 277  Q
    ||||| ||||||| ||||||||| ||| ||||||||||||| | |||||| ||||||||||||||||||||  ||||||||||||  |||| |||   |     
T  24476146 gttgtgcaatctttttccagaaaatgtttgaatgttcatcatagtcatagtttgctttatgaacaagatgactaaaactgttttt--gtat-aagatgaa 24476242  T
Q  278 tgtctttcgacagaaatcagtaaataaaatgcaagtaaaa 317  Q
    ||||||||||||||||||||| || |||||||||||||||    
T  24476243 tgtctttcgacagaaatcagtgaagaaaatgcaagtaaaa 24476282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 208 - 322
Target Start/End: Original strand, 24924739 - 24924852
Alignment:
Q  208 aatgttcatcaaattcataggttgctttatgaacaagatgaagaaaactgttttttggtatgaaggcaactgtctttcgacagaaatcagtaaataaaat 307  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||| | |||||||     ||||||||||||||| || | ||||  ||||    
T  24924739 aatgttcatcatattcacaggttgctttatgaacaagatgaagaaaattgttttgt-gtatgaaaaggtctgtctttcgacagagataaataaaggaaat 24924837  T
Q  308 gcaagtaaaagactt 322  Q
    |||||||||||||||    
T  24924838 gcaagtaaaagactt 24924852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 178 - 296
Target Start/End: Complemental strand, 6244187 - 6244073
Alignment:
Q  178 gttgtacaatcttcttccagaaattgtatgaatgttcatcaaattcataggttgctttatgaacaagatgaagaaaactgttttttggtatgaaggcaac 277  Q
    ||||| ||||||| ||||||||| ||| ||||||||||||| ||| |||  |||||| |||||||||||||| |||| || ||||||| ||||||   |     
T  6244187 gttgtgcaatctttttccagaaaatgtttgaatgttcatcatatttatactttgcttgatgaacaagatgaataaaattg-tttttggaatgaag---at 6244092  T
Q  278 tgtctttcgacagaaatca 296  Q
    |||||||||||||||||||    
T  6244091 tgtctttcgacagaaatca 6244073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 361 - 416
Target Start/End: Original strand, 12568123 - 12568178
Alignment:
Q  361 aaatgcagaaacttaaagaaaaggtaaattgaattgcattaatgtaaaggtggttt 416  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  12568123 aaatgcaaaaacttaaagaaaaggtaaattgcattgcattaatgtaaaggtagttt 12568178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 220 - 317
Target Start/End: Original strand, 18553176 - 18553270
Alignment:
Q  220 attcataggttgctttatgaacaagatgaagaaaactgttttttggtatgaaggcaactgtctttcgacagaaatcagtaaataaaatgcaagtaaaa 317  Q
    |||||||| | ||||||||||||||||||| ||||||||||||  ||||||||  || |||||||||||| |||||||| ||  ||||||||||||||    
T  18553176 attcatagttcgctttatgaacaagatgaataaaactgttttt--gtatgaagataattgtctttcgacaaaaatcagtgaa-gaaatgcaagtaaaa 18553270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 367 - 415
Target Start/End: Original strand, 24924868 - 24924916
Alignment:
Q  367 agaaacttaaagaaaaggtaaattgaattgcattaatgtaaaggtggtt 415  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||||    
T  24924868 agaaacttaaagaaaaggtatattgcattgcattaatgtaaaggtggtt 24924916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 369 - 415
Target Start/End: Original strand, 4697469 - 4697515
Alignment:
Q  369 aaacttaaagaaaaggtaaattgaattgcattaatgtaaaggtggtt 415  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||    
T  4697469 aaacttaaagaaaaggtaaattgtattgcattaaagtaaaggtggtt 4697515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 262
Target Start/End: Original strand, 14540404 - 14540488
Alignment:
Q  178 gttgtacaatcttcttccagaaattgtatgaatgttcatcaaattcataggttgctttatgaacaagatgaagaaaactgttttt 262  Q
    ||||| ||||||| ||||||||   || ||||||||||||| |||||||| ||| |||||||||| ||| |||||||||| ||||    
T  14540404 gttgtgcaatctttttccagaagaggtttgaatgttcatcatattcatagtttgatttatgaacacgataaagaaaactgatttt 14540488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 245
Target Start/End: Original strand, 6337877 - 6337911
Alignment:
Q  211 gttcatcaaattcataggttgctttatgaacaaga 245  Q
    |||||||||||||||||||||||||||||||||||    
T  6337877 gttcatcaaattcataggttgctttatgaacaaga 6337911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 212 - 245
Target Start/End: Original strand, 4697344 - 4697377
Alignment:
Q  212 ttcatcaaattcataggttgctttatgaacaaga 245  Q
    ||||||||||||||||||||||||||||||||||    
T  4697344 ttcatcaaattcataggttgctttatgaacaaga 4697377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 400
Target Start/End: Original strand, 16675093 - 16675132
Alignment:
Q  361 aaatgcagaaacttaaagaaaaggtaaattgaattgcatt 400  Q
    |||||||||||| |||||||||||||||||| ||||||||    
T  16675093 aaatgcagaaacataaagaaaaggtaaattgtattgcatt 16675132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 245
Target Start/End: Original strand, 41457417 - 41457456
Alignment:
Q  206 tgaatgttcatcaaattcataggttgctttatgaacaaga 245  Q
    |||| ||||||||||||||||||||| |||||||||||||    
T  41457417 tgaacgttcatcaaattcataggttgttttatgaacaaga 41457456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 243
Target Start/End: Complemental strand, 9354698 - 9354661
Alignment:
Q  206 tgaatgttcatcaaattcataggttgctttatgaacaa 243  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  9354698 tgaacgttcatcaaattcataggttgttttatgaacaa 9354661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 245
Target Start/End: Original strand, 16674976 - 16675009
Alignment:
Q  212 ttcatcaaattcataggttgctttatgaacaaga 245  Q
    ||||||||||| ||||||||||||||||||||||    
T  16674976 ttcatcaaatttataggttgctttatgaacaaga 16675009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 8e-34; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 178 - 322
Target Start/End: Complemental strand, 17162261 - 17162119
Alignment:
Q  178 gttgtacaatcttcttccagaaattgtatgaatgttcatcaaattcataggttgctttatgaacaagatgaagaaaactgttttttggtatgaaggcaac 277  Q
    ||||| ||||||| ||||| ||| |  |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||  ||||||||  ||     
T  17162261 gttgtgcaatctttttccataaaatacatgaatgttcatcatattcataggttgctttatgaataagatgaagaaaactgttttt--gtatgaagataat 17162164  T
Q  278 tgtctttcgacagaaatcagtaaataaaatgcaagtaaaagactt 322  Q
    || ||||||||||| |  |||||||||||||||||||||||||||    
T  17162163 tgcctttcgacagagacaagtaaataaaatgcaagtaaaagactt 17162119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 192 - 328
Target Start/End: Complemental strand, 31000146 - 31000013
Alignment:
Q  192 ttccagaaattgtatgaatgttcatcaaattcataggttgctttatgaacaagatgaagaaaactgttttttggtatgaaggcaactgtctttcgacaga 291  Q
    ||||||||| ||  ||||||||||||| |||||||| ||||| ||||||||||||| | |||||| ||||   ||||||||  || |||||||||||| |    
T  31000146 ttccagaaaatggttgaatgttcatcatattcatagtttgctctatgaacaagatggataaaactatttt---gtatgaagataattgtctttcgacata 31000050  T
Q  292 aatcagtaaataaaatgcaagtaaaagacttgaaagt 328  Q
    ||||||| || |||||||||||||||||||| |||||    
T  31000049 aatcagtgaagaaaatgcaagtaaaagacttaaaagt 31000013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 326 - 415
Target Start/End: Original strand, 17636660 - 17636751
Alignment:
Q  326 agtaaagaaaatacaagtgaaaggctttaaa-gtttaaat-gcagaaacttaaagaaaaggtaaattgaattgcattaatgtaaaggtggtt 415  Q
    ||||| |||||| ||||| |||| ||||||| |||||||  |||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  17636660 agtaacgaaaatgcaagtaaaagactttaaaagtttaaaacgcagaaacttaaagaaaaggtaaattgccttgcattaatgtaaaggtggtt 17636751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 326 - 415
Target Start/End: Original strand, 17676518 - 17676609
Alignment:
Q  326 agtaaagaaaatacaagtgaaaggctttaaa-gtttaaat-gcagaaacttaaagaaaaggtaaattgaattgcattaatgtaaaggtggtt 415  Q
    ||||| |||||| ||||| |||| ||||||| |||||||  ||| |||||||||||||||||||||||  ||||||||||||||||||||||    
T  17676518 agtaacgaaaatgcaagtaaaagactttaaaagtttaaaacgcataaacttaaagaaaaggtaaattgccttgcattaatgtaaaggtggtt 17676609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 325 - 413
Target Start/End: Complemental strand, 17162146 - 17162057
Alignment:
Q  325 aagtaaagaaaatacaagtgaaaggctttaaa-gtttaaatgcagaaacttaaagaaaaggtaaattgaattgcattaatgtaaaggtgg 413  Q
    ||||||| ||||| ||||| |||| ||||||| |||||||  || |||||||||| |||||||||||| ||||||||||| |||||||||    
T  17162146 aagtaaataaaatgcaagtaaaagactttaaaagtttaaacacaaaaacttaaaggaaaggtaaattgcattgcattaatataaaggtgg 17162057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 178 - 262
Target Start/End: Original strand, 13370220 - 13370304
Alignment:
Q  178 gttgtacaatcttcttccagaaattgtatgaatgttcatcaaattcataggttgctttatgaacaagatgaagaaaactgttttt 262  Q
    ||||| ||||||| ||||| ||| | | ||||||||||||| |||||||| ||  |||||||||||||||||||||| |||||||    
T  13370220 gttgtgcaatctttttccaaaaaatatgtgaatgttcatcatattcatagtttattttatgaacaagatgaagaaaattgttttt 13370304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 207 - 287
Target Start/End: Complemental strand, 16467531 - 16467452
Alignment:
Q  207 gaatgttcatcaaattcataggttgctttatgaacaagatgaagaaaactgttttttggtatgaaggcaactgtctttcga 287  Q
    |||||||||||| | |||||| ||| ||||||||||||||||| ||||||||||||| |||||| |  |||||||||||||    
T  16467531 gaatgttcatcatactcatagtttgttttatgaacaagatgaataaaactgtttttt-gtatgacgataactgtctttcga 16467452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 369 - 415
Target Start/End: Complemental strand, 21498222 - 21498176
Alignment:
Q  369 aaacttaaagaaaaggtaaattgaattgcattaatgtaaaggtggtt 415  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||    
T  21498222 aaacttaaagaaaaggtaaattgcattgcattaatgtaaaagtggtt 21498176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 358 - 415
Target Start/End: Original strand, 2482008 - 2482065
Alignment:
Q  358 tttaaatgcagaaacttaaagaaaaggtaaattgaattgcattaatgtaaaggtggtt 415  Q
    |||||| ||| ||| ||||||||||||||||||| ||||||||||||||||| |||||    
T  2482008 tttaaacgcataaaattaaagaaaaggtaaattgcattgcattaatgtaaagatggtt 2482065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 361 - 402
Target Start/End: Complemental strand, 31404198 - 31404157
Alignment:
Q  361 aaatgcagaaacttaaagaaaaggtaaattgaattgcattaa 402  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  31404198 aaatgcagaaacttaaagaaaaggtaaattgcattgcattaa 31404157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 178 - 241
Target Start/End: Complemental strand, 15438300 - 15438237
Alignment:
Q  178 gttgtacaatcttcttccagaaattgtatgaatgttcatcaaattcataggttgctttatgaac 241  Q
    ||||| ||||||| || |||||| |||||||||||| ||||| ||| |||||||||||||||||    
T  15438300 gttgtgcaatcttttttcagaaaatgtatgaatgttaatcaagttcttaggttgctttatgaac 15438237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 262
Target Start/End: Original strand, 21625238 - 21625308
Alignment:
Q  192 ttccagaaattgtatgaatgttcatcaaattcataggttgctttatgaacaagatgaagaaaactgttttt 262  Q
    |||| |||| ||| ||||||||||||| |||||||| ||| ||||||| |||||||||  |||||||||||    
T  21625238 ttcccgaaaatgtttgaatgttcatcatattcatagtttgttttatgagcaagatgaatgaaactgttttt 21625308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 408
Target Start/End: Complemental strand, 31000041 - 30999963
Alignment:
Q  330 aagaaaatacaagtgaaaggctttaaagtttaaatgcagaaacttaaagaaaaggtaaattgaattgcattaatgtaaa 408  Q
    |||||||| ||||| |||| ||| |||||||||||||| |||| |||||||||  ||||||| |||||| ||| |||||    
T  31000041 aagaaaatgcaagtaaaagacttaaaagtttaaatgcataaacataaagaaaatttaaattgcattgcactaaagtaaa 30999963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 230
Target Start/End: Complemental strand, 20515800 - 20515755
Alignment:
Q  185 aatcttcttccagaaattgtatgaatgttcatcaaattcataggtt 230  Q
    |||||| ||||||||| ||||||||||||||||| |||||||||||    
T  20515800 aatctttttccagaaagtgtatgaatgttcatcatattcataggtt 20515755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 211 - 248
Target Start/End: Complemental strand, 31404316 - 31404279
Alignment:
Q  211 gttcatcaaattcataggttgctttatgaacaagatga 248  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  31404316 gttcatcaaattcataggttgctttatgaacaacatga 31404279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 416
Target Start/End: Original strand, 32890346 - 32890441
Alignment:
Q  324 aaagtaaagaaaa-tacaagtgaaaggctttaaa-gtttaaat-gcagaaacttaaagaaaaggtaaattgaattgcattaatgtaaaggtggttt 416  Q
    ||||||||||||| | ||||| |||| ||||||| |||||||  ||| ||||| ||||||||| ||||||  |||||||||||||||| |||||||    
T  32890346 aaagtaaagaaaaatgcaagtaaaagactttaaaagtttaaaacgcataaactaaaagaaaagataaatttcattgcattaatgtaaaagtggttt 32890441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 296
Target Start/End: Complemental strand, 35406033 - 35405971
Alignment:
Q  233 tttatgaacaagatgaagaaaactgttttttggtatgaaggcaactgtctttcgacagaaatca 296  Q
    |||||||||||||||||| |||| ||||||| | ||||||  ||||||||||||||| ||||||    
T  35406033 tttatgaacaagatgaaggaaaccgtttttttg-atgaagataactgtctttcgacataaatca 35405971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 415
Target Start/End: Complemental strand, 15438143 - 15438098
Alignment:
Q  370 aacttaaagaaaaggtaaattgaattgcattaatgtaaaggtggtt 415  Q
    ||||||||| |||||||||||| ||| ||||||||||| |||||||    
T  15438143 aacttaaaggaaaggtaaattgcattacattaatgtaatggtggtt 15438098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 205 - 328
Target Start/End: Original strand, 34992227 - 34992350
Alignment:
Q  205 atgaatgttcatcaaattcataggttgctttatgaacaagatgaagaaaactgttttttggtatgaaggcaactgtctttcgacagaaatcagtaaataa 304  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||| |||||||| || |||||||||||||||| ||||||  ||    
T  34992227 atgaatgttcatcatattcataggttgctttatgaacaagatgaataaaattgttttttgttatgaaggtaa-tgtctttcgacagaaagcagtaatgaa 34992325  T
Q  305 aatgcaagta-aaagacttgaaagt 328  Q
    |||||||||| |||||||| |||||    
T  34992326 aatgcaagtataaagacttaaaagt 34992350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 179 - 264
Target Start/End: Original strand, 6038811 - 6038896
Alignment:
Q  179 ttgtacaatcttcttccagaaattgtatgaatgttcatcaaattcataggttgctttatgaacaagatgaagaaaactgttttttg 264  Q
    |||| ||||||| ||||||||| ||  ||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||    
T  6038811 ttgtgcaatctttttccagaaaatgcttgaatgttcatcatattcatagtttgctttatgaacaagatgaataaaactgttttttg 6038896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 178 - 249
Target Start/End: Original strand, 28712221 - 28712292
Alignment:
Q  178 gttgtacaatcttcttccagaaattgtatgaatgttcatcaaattcataggttgctttatgaacaagatgaa 249  Q
    ||||| ||||||| ||||| ||| ||||||||||||||| | ||||||||||||||||||||||||||||||    
T  28712221 gttgtgcaatctttttccataaagtgtatgaatgttcataatattcataggttgctttatgaacaagatgaa 28712292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 355 - 415
Target Start/End: Original strand, 17352686 - 17352746
Alignment:
Q  355 aagtttaaatgcagaaacttaaagaaaaggtaaattgaattgcattaatgtaaaggtggtt 415  Q
    ||||||||| ||||||| ||||||||||||||||||| |||||||||||||||| ||||||    
T  17352686 aagtttaaacgcagaaatttaaagaaaaggtaaattgcattgcattaatgtaaatgtggtt 17352746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 369 - 415
Target Start/End: Complemental strand, 4031140 - 4031094
Alignment:
Q  369 aaacttaaagaaaaggtaaattgaattgcattaatgtaaaggtggtt 415  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  4031140 aaacttaaagaaaaggtaaattgcattgcattaatgtaaaggtggtt 4031094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 365 - 415
Target Start/End: Original strand, 28712369 - 28712419
Alignment:
Q  365 gcagaaacttaaagaaaaggtaaattgaattgcattaatgtaaaggtggtt 415  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  28712369 gcagaaacttaaagaaaaggtaaattacattgcattaatgtaaaggtggtt 28712419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 1469494 - 1469442
Alignment:
Q  196 agaaattgtatgaatgttcatcaaattcataggttgctttatgaacaagatgaag 250  Q
    ||||| |||||||||||||||||| ||||  ||||||||||||||||||||||||    
T  1469494 agaaaatgtatgaatgttcatcaagttca--ggttgctttatgaacaagatgaag 1469442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 24154419 - 24154357
Alignment:
Q  178 gttgtacaatcttcttccagaaattgtatgaatgttcatcaaattcataggttgctttatgaa 240  Q
    ||||| ||||||| ||||||||| |  |||| ||||||||| |||||||||||||||||||||    
T  24154419 gttgtgcaatctttttccagaaaattcatgagtgttcatcatattcataggttgctttatgaa 24154357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 402
Target Start/End: Original strand, 16793272 - 16793313
Alignment:
Q  361 aaatgcagaaacttaaagaaaaggtaaattgaattgcattaa 402  Q
    |||||||||||||||| |||||||||||||| ||||||||||    
T  16793272 aaatgcagaaacttaaggaaaaggtaaattgcattgcattaa 16793313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 242295 - 242231
Alignment:
Q  178 gttgtacaatcttcttccagaaattgtatgaatgttcatcaaattcataggttgctttatgaaca 242  Q
    ||||| |||| || ||||||||| ||  ||||||||||||| ||||||||||| |||||||||||    
T  242295 gttgtgcaatatttttccagaaagtgcttgaatgttcatcatattcataggttactttatgaaca 242231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 411
Target Start/End: Complemental strand, 19724005 - 19723938
Alignment:
Q  345 aaaggctttaaagtttaaat-gcagaaacttaaagaaaaggtaaattgaattgcattaatgtaaaggt 411  Q
    |||| ||| ||||||||||  ||| ||| |||||||||| |||||||| |||||||||||||||||||    
T  19724005 aaagacttaaaagtttaaaacgcataaatttaaagaaaaagtaaattgcattgcattaatgtaaaggt 19723938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 245
Target Start/End: Original strand, 9404620 - 9404654
Alignment:
Q  211 gttcatcaaattcataggttgctttatgaacaaga 245  Q
    ||||||||| |||||||||||||||||||||||||    
T  9404620 gttcatcaatttcataggttgctttatgaacaaga 9404654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 402
Target Start/End: Complemental strand, 14763080 - 14763042
Alignment:
Q  364 tgcagaaacttaaagaaaaggtaaattgaattgcattaa 402  Q
    |||||||||||||||||||| ||||||| ||||||||||    
T  14763080 tgcagaaacttaaagaaaagataaattgcattgcattaa 14763042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 245
Target Start/End: Complemental strand, 14763201 - 14763167
Alignment:
Q  211 gttcatcaaattcataggttgctttatgaacaaga 245  Q
    ||||||||| |||||||||||||||||||||||||    
T  14763201 gttcatcaagttcataggttgctttatgaacaaga 14763167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 245
Target Start/End: Complemental strand, 17296433 - 17296399
Alignment:
Q  211 gttcatcaaattcataggttgctttatgaacaaga 245  Q
    |||||||||||||| ||||||||||||||||||||    
T  17296433 gttcatcaaattcagaggttgctttatgaacaaga 17296399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 18713597 - 18713629
Alignment:
Q  211 gttcatcaaattcataggttgctttatgaacaa 243  Q
    ||||||||||||||||||| |||||||||||||    
T  18713597 gttcatcaaattcataggtagctttatgaacaa 18713629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 8e-31; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 205 - 328
Target Start/End: Complemental strand, 11994163 - 11994040
Alignment:
Q  205 atgaatgttcatcaaattcataggttgctttatgaacaagatgaagaaaactgttttttggtatgaaggcaactgtctttcgacagaaatcagtaaataa 304  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||| |||||||| || |||||||||||||||| || |||  ||    
T  11994163 atgaatgttcatcatattcataggttgctttatgaacaagatgaataaaaatgttttttgttatgaaggtaa-tgtctttcgacagaaagcaataatgaa 11994065  T
Q  305 aatgcaagta-aaagacttgaaagt 328  Q
    |||||||||| |||||||| |||||    
T  11994064 aatgcaagtataaagacttaaaagt 11994040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 204 - 322
Target Start/End: Original strand, 12468793 - 12468908
Alignment:
Q  204 tatgaatgttcatcaaattcataggttgctttatgaacaagatgaagaaaactgttttttggtatgaaggcaactgtctttcgacagaaatcagtaaata 303  Q
    ||||||||||||||| ||||||||  ||||||||| |||||||||||||||||||||||  ||||||||  ||||| || || ||||| ||||||||| |    
T  12468793 tatgaatgttcatcatattcatagactgctttatg-acaagatgaagaaaactgttttt--gtatgaagataactgcctatcaacagagatcagtaaaga 12468889  T
Q  304 aaatgcaagtaaaagactt 322  Q
    |||||||| ||||||||||    
T  12468890 aaatgcaaataaaagactt 12468908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 325 - 415
Target Start/End: Complemental strand, 1545774 - 1545684
Alignment:
Q  325 aagtaaagaaaatacaagtgaaaggctttaaagtttaaatgcagaaacttaaagaaaaggtaaattgaattgcattaatgtaaaggtggtt 415  Q
    |||||||| |||| ||||| |||| ||| |||||||||| ||||||| ||||||||||||||||||| |||||||||||||||| ||||||    
T  1545774 aagtaaaggaaatgcaagtaaaagacttaaaagtttaaacgcagaaaattaaagaaaaggtaaattgcattgcattaatgtaaatgtggtt 1545684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 331 - 408
Target Start/End: Complemental strand, 7948158 - 7948081
Alignment:
Q  331 agaaaatacaagtgaaaggctttaaagtttaaatgcagaaacttaaagaaaaggtaaattgaattgcattaatgtaaa 408  Q
    ||||||| ||||| |||| ||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  7948158 agaaaatgcaagtaaaagacttaaaagtttaaacgcagaaacttaaagaaaaggtaaattgcattgcattaatgtaaa 7948081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 345 - 415
Target Start/End: Complemental strand, 25621233 - 25621162
Alignment:
Q  345 aaaggctttaaagtttaaat-gcagaaacttaaagaaaaggtaaattgaattgcattaatgtaaaggtggtt 415  Q
    |||| ||| ||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  25621233 aaagacttaaaagtttaaaacgcagaaacttaaagaaaaggtaaattgtattgcattaatgtaaaggtggtt 25621162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 208 - 328
Target Start/End: Complemental strand, 1545859 - 1545741
Alignment:
Q  208 aatgttcatcaaattcataggttgctttatgaacaagatgaagaaaactgttttttggtatgaaggcaactgtctttcgacagaaatcagtaaataaaat 307  Q
    ||||||||| | ||||||| |||| |||||||| ||||||||||||| |||||||  ||||||||  ||||| || |||| ||| || ||||||  ||||    
T  1545859 aatgttcattatattcataagttgttttatgaataagatgaagaaaattgttttt--gtatgaagataactgcctctcgatagagataagtaaaggaaat 1545762  T
Q  308 gcaagtaaaagacttgaaagt 328  Q
    ||||||||||||||| |||||    
T  1545761 gcaagtaaaagacttaaaagt 1545741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 179 - 254
Target Start/End: Original strand, 15682684 - 15682759
Alignment:
Q  179 ttgtacaatcttcttccagaaattgtatgaatgttcatcaaattcataggttgctttatgaacaagatgaagaaaa 254  Q
    |||| ||||||| ||||||||| ||| ||||||||||||| ||||||  |||| ||||||||||||||||||||||    
T  15682684 ttgtgcaatctttttccagaaaatgtttgaatgttcatcatattcatgtgttgttttatgaacaagatgaagaaaa 15682759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 178 - 246
Target Start/End: Original strand, 28037010 - 28037078
Alignment:
Q  178 gttgtacaatcttcttccagaaattgtatgaatgttcatcaaattcataggttgctttatgaacaagat 246  Q
    ||||| ||||||| ||  ||||| ||||||||||||||||| |||||||||||||||||| ||||||||    
T  28037010 gttgtgcaatctttttttagaaagtgtatgaatgttcatcatattcataggttgctttataaacaagat 28037078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 326 - 415
Target Start/End: Original strand, 12468882 - 12468970
Alignment:
Q  326 agtaaagaaaatacaagtgaaaggctttaaagtttaaatgcagaaacttaaagaaaaggtaaattgaattgcattaatgtaaaggtggtt 415  Q
    |||||||||||| ||| | |||| ||| ||| |||||| ||| |||||||||||||| |||||||| |||||||||| ||||| ||||||    
T  12468882 agtaaagaaaatgcaaataaaagacttaaaaatttaaacgcataaacttaaagaaaa-gtaaattgcattgcattaaagtaaatgtggtt 12468970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 211 - 248
Target Start/End: Original strand, 18084173 - 18084210
Alignment:
Q  211 gttcatcaaattcataggttgctttatgaacaagatga 248  Q
    ||||||||||||||||||||||||||||||||||||||    
T  18084173 gttcatcaaattcataggttgctttatgaacaagatga 18084210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 206 - 245
Target Start/End: Complemental strand, 9022776 - 9022737
Alignment:
Q  206 tgaatgttcatcaaattcataggttgctttatgaacaaga 245  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  9022776 tgaacgttcatcaaattcataggttgctttatgaacaaga 9022737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 415
Target Start/End: Complemental strand, 7524855 - 7524802
Alignment:
Q  361 aaatgcagaaacttaaagaaaaggtaaattgaattgcattaatgtaaaggtggtt 415  Q
    ||||||||||||||||| |||| |||||||  |||||||||||||||||||||||    
T  7524855 aaatgcagaaacttaaa-aaaatgtaaattacattgcattaatgtaaaggtggtt 7524802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 415
Target Start/End: Original strand, 18046385 - 18046431
Alignment:
Q  369 aaacttaaagaaaaggtaaattgaattgcattaatgtaaaggtggtt 415  Q
    ||||||||||||||||||||||| ||||||||||  |||||||||||    
T  18046385 aaacttaaagaaaaggtaaattgcattgcattaaaataaaggtggtt 18046431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 4979093 - 4979021
Alignment:
Q  178 gttgtacaatcttcttccagaaattgtatgaatgttcatcaaattcataggttgctttatgaacaagatgaag 250  Q
    ||||| ||||||| ||| ||||| |||||||||||||| ||| || ||| |||| |||||||||| |||||||    
T  4979093 gttgtgcaatctttttctagaaaatgtatgaatgttcaccaagtttataagttgttttatgaacaggatgaag 4979021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 245
Target Start/End: Complemental strand, 7524961 - 7524926
Alignment:
Q  210 tgttcatcaaattcataggttgctttatgaacaaga 245  Q
    ||||||||||||||||||||||||||| ||||||||    
T  7524961 tgttcatcaaattcataggttgctttacgaacaaga 7524926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 296
Target Start/End: Complemental strand, 14629014 - 14628922
Alignment:
Q  202 tgtatgaatgttcatcaaattcataggttgctttatgaacaagatgaagaaaactgttttttggtatgaaggcaactgtctttcgacagaaatca 296  Q
    ||||||||||||||||| ||||||  |||  |||||||||||||| |||| |||||  ||| || ||||||  || |||||||||||| ||||||    
T  14629014 tgtatgaatgttcatcatattcatgagttagtttatgaacaagataaagagaactg--tttggggatgaagaaaattgtctttcgacaaaaatca 14628922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 416
Target Start/End: Original strand, 18084295 - 18084346
Alignment:
Q  365 gcagaaacttaaagaaaaggtaaattgaattgcattaatgtaaaggtggttt 416  Q
    ||||||||||||||||||| ||||||| ||| ||||||  ||||||||||||    
T  18084295 gcagaaacttaaagaaaagataaattgcattacattaaaataaaggtggttt 18084346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 408
Target Start/End: Original strand, 28037163 - 28037202
Alignment:
Q  369 aaacttaaagaaaaggtaaattgaattgcattaatgtaaa 408  Q
    |||||| |||||||||||||||| ||||||||||||||||    
T  28037163 aaacttgaagaaaaggtaaattgcattgcattaatgtaaa 28037202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 415
Target Start/End: Original strand, 15682827 - 15682889
Alignment:
Q  354 aaagtttaaatgcagaaacttaaagaaaag-gtaaattgaattgcattaatgtaaaggtggtt 415  Q
    ||||||||||||||  ||||| || ||||| |||||||| |||||||||||||||| ||||||    
T  15682827 aaagtttaaatgcatcaactttaataaaagtgtaaattgcattgcattaatgtaaaagtggtt 15682889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 248
Target Start/End: Complemental strand, 10649501 - 10649464
Alignment:
Q  211 gttcatcaaattcataggttgctttatgaacaagatga 248  Q
    |||||||||||||||||| | |||||||||||||||||    
T  10649501 gttcatcaaattcatagggtactttatgaacaagatga 10649464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 41131797 - 41131833
Alignment:
Q  206 tgaatgttcatcaaattcataggttgctttatgaaca 242  Q
    |||| |||||||||||||||||| |||||||||||||    
T  41131797 tgaacgttcatcaaattcataggctgctttatgaaca 41131833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 179 - 328
Target Start/End: Original strand, 9422951 - 9423100
Alignment:
Q  179 ttgtacaatcttcttccagaaattgtatgaatgttcatcaaattcataggttgctttatgaacaagatgaagaaaactgttttttggtatgaaggcaact 278  Q
    |||| ||||||| ||||| ||| |  |||||||||||||| ||||||||||| |||||||||||||||||| |||| ||| ||||| |||||||| || |    
T  9422951 ttgtgcaatctttttccataaaatacatgaatgttcatcatattcataggttactttatgaacaagatgaataaaattgtgttttgttatgaaggtaa-t 9423049  T
Q  279 gtctttcgacagaaatcagtaaataaaatgcaagta-aaagacttgaaagt 328  Q
    ||||||||||||||| ||||||  |||||||||||| |||||||| |||||    
T  9423050 gtctttcgacagaaagcagtaatgaaaatgcaagtataaagacttaaaagt 9423100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 324 - 415
Target Start/End: Original strand, 21390611 - 21390704
Alignment:
Q  324 aaagtaaagaaaatacaagtgaaaggctttaaa-gtttaaa-tgcagaaacttaaagaaaaggtaaattgaattgcattaatgtaaaggtggtt 415  Q
    ||||||||| |||| ||||| |||| ||||||| ||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  21390611 aaagtaaaggaaatgcaagtaaaagactttaaaagtttaaaatgcagaaacttaaagaaaaggtaaatcgcattgcattaatgtaaaggtggtt 21390704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 178 - 328
Target Start/End: Original strand, 10235893 - 10236040
Alignment:
Q  178 gttgtacaatcttcttccagaaattgtatgaatgttcatcaaattcataggttgctttatgaacaagatgaagaaaactgttttttggtatgaaggcaac 277  Q
    ||||| ||||||| ||||| ||| |  ||||||||||||||  ||||||| |||||||||||||||||| || |||| |||||||  |||||||   ||     
T  10235893 gttgtgcaatctttttccaaaaaatacatgaatgttcatcat-ttcatagtttgctttatgaacaagatcaataaaattgttttt--gtatgaaaataat 10235989  T
Q  278 tgtctttcgacagaaatcagtaaataaaatgcaagtaaaagacttgaaagt 328  Q
    |||||||||||| ||| |||||||  ||||||||||||||||||| |||||    
T  10235990 tgtctttcgacataaagcagtaaagcaaatgcaagtaaaagacttaaaagt 10236040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 326 - 415
Target Start/End: Original strand, 10236008 - 10236097
Alignment:
Q  326 agtaaagaaaatacaagtgaaaggctttaaagtttaaatgcagaaacttaaagaaaaggtaaattgaattgcattaatgtaaaggtggtt 415  Q
    ||||||| |||| ||||| |||| ||| ||||||||||||||||||||||||||||| |||||||| ||||||||||  |||| ||||||    
T  10236008 agtaaagcaaatgcaagtaaaagacttaaaagtttaaatgcagaaacttaaagaaaatgtaaattgcattgcattaaaataaaagtggtt 10236097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 22987574 - 22987646
Alignment:
Q  178 gttgtacaatcttcttccagaaattgtatgaatgttcatcaaattcataggttgctttatgaacaagatgaag 250  Q
    ||||| ||||||| ||||||||| ||| ||||||||||||| |||||||||||||||||| ||||||||||||    
T  22987574 gttgtgcaatctttttccagaaagtgtgtgaatgttcatcatattcataggttgctttataaacaagatgaag 22987646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 354 - 415
Target Start/End: Original strand, 22987712 - 22987773
Alignment:
Q  354 aaagtttaaatgcagaaacttaaagaaaaggtaaattgaattgcattaatgtaaaggtggtt 415  Q
    ||||||||||| || |||||||||| |||||||||||| |||||||||||||||||||||||    
T  22987712 aaagtttaaattcataaacttaaagtaaaggtaaattgcattgcattaatgtaaaggtggtt 22987773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 192 - 328
Target Start/End: Original strand, 20646328 - 20646470
Alignment:
Q  192 ttccagaaattgtatgaatgttcatcaaattcataggttgctttatgaacaagatg-------aagaaaactgttttttggtatgaaggcaactgtcttt 284  Q
    ||||| ||||||| ||||||||||||| |||| ||| |||||||||||||||||||       || ||||||| | ||| ||||||||  || |||||||    
T  20646328 ttccaaaaattgtttgaatgttcatcatattcttagtttgctttatgaacaagatgaaagaaaaaaaaaactgctattt-gtatgaagataaatgtcttt 20646426  T
Q  285 cgacagaaatcagtaaataaaatgcaagtaaaagacttgaaagt 328  Q
    ||||||| |||| | || |||||| ||||||||||||| |||||    
T  20646427 cgacagagatcaatgaagaaaatgtaagtaaaagacttaaaagt 20646470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 330 - 415
Target Start/End: Complemental strand, 30985686 - 30985601
Alignment:
Q  330 aagaaaatacaagtgaaaggctttaaagtttaaatgcagaaacttaaagaaaaggtaaattgaattgcattaatgtaaaggtggtt 415  Q
    |||||||  ||||| |||| ||| |||||||||||| |||||||||||||||| |||||||| ||||||||||  |||| ||||||    
T  30985686 aagaaaaggcaagtaaaagacttaaaagtttaaatgtagaaacttaaagaaaatgtaaattgcattgcattaaaataaatgtggtt 30985601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 324 - 411
Target Start/End: Original strand, 24309004 - 24309092
Alignment:
Q  324 aaagtaaagaaaatacaagtgaaaggctttaaagtttaaat-gcagaaacttaaagaaaaggtaaattgaattgcattaatgtaaaggt 411  Q
    ||||||||| |||| ||||| |||| ||| ||||||||||  | | ||||||||||||||||||||||| |||| ||||||||||||||    
T  24309004 aaagtaaaggaaatgcaagtaaaagacttaaaagtttaaaacgtaaaaacttaaagaaaaggtaaattgcattgtattaatgtaaaggt 24309092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 324 - 411
Target Start/End: Complemental strand, 24364322 - 24364234
Alignment:
Q  324 aaagtaaagaaaatacaagtgaaaggctttaaagtttaaat-gcagaaacttaaagaaaaggtaaattgaattgcattaatgtaaaggt 411  Q
    ||||||||| |||| ||||| |||| ||| ||||||||||  | | ||||||||||||||||||||||| |||| ||||||||||||||    
T  24364322 aaagtaaaggaaatgcaagtaaaagacttaaaagtttaaaacgtaaaaacttaaagaaaaggtaaattgcattgtattaatgtaaaggt 24364234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 368 - 415
Target Start/End: Original strand, 24663550 - 24663597
Alignment:
Q  368 gaaacttaaagaaaaggtaaattgaattgcattaatgtaaaggtggtt 415  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||    
T  24663550 gaaacttaaagaaaaagtaaattgcattgcattaatgtaaaggtggtt 24663597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 367 - 412
Target Start/End: Original strand, 22848014 - 22848059
Alignment:
Q  367 agaaacttaaagaaaaggtaaattgaattgcattaatgtaaaggtg 412  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||    
T  22848014 agaaacttaaagaaaaggtaaattgcattgcattaatataaaggtg 22848059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 28619505 - 28619441
Alignment:
Q  178 gttgtacaatcttcttccagaaattgtatgaatgttcatcaaattcataggttgctttatgaaca 242  Q
    ||||| ||||| | ||||||||| ||| ||||||||||||| ||||||| |||||||||||||||    
T  28619505 gttgtgcaatccttttccagaaaatgtgtgaatgttcatcatattcataagttgctttatgaaca 28619441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 210 - 245
Target Start/End: Complemental strand, 19926968 - 19926933
Alignment:
Q  210 tgttcatcaaattcataggttgctttatgaacaaga 245  Q
    ||||||||||||||||||||||||||||||||||||    
T  19926968 tgttcatcaaattcataggttgctttatgaacaaga 19926933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 206 - 328
Target Start/End: Original strand, 24308926 - 24309038
Alignment:
Q  206 tgaatgttcatcaaattcataggttgctttatgaacaagatgaagaaaactgttttttggtatgaaggcaactgtctttcgacagaaatcagtaaataaa 305  Q
    |||| |||||||| |||||||||||||||||||||||||| ||||          || ||||||||  |||||||| ||||||||| |  ||||||  ||    
T  24308926 tgaacgttcatcatattcataggttgctttatgaacaagacgaag----------ttaggtatgaaaacaactgtccttcgacagagaaaagtaaaggaa 24309015  T
Q  306 atgcaagtaaaagacttgaaagt 328  Q
    ||||||||||||||||| |||||    
T  24309016 atgcaagtaaaagacttaaaagt 24309038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 206 - 328
Target Start/End: Complemental strand, 24364400 - 24364288
Alignment:
Q  206 tgaatgttcatcaaattcataggttgctttatgaacaagatgaagaaaactgttttttggtatgaaggcaactgtctttcgacagaaatcagtaaataaa 305  Q
    |||| |||||||| |||||||||||||||||||||||||| ||||          || ||||||||  |||||||| ||||||||| |  ||||||  ||    
T  24364400 tgaacgttcatcatattcataggttgctttatgaacaagacgaag----------ttaggtatgaaaacaactgtccttcgacagagaaaagtaaaggaa 24364311  T
Q  306 atgcaagtaaaagacttgaaagt 328  Q
    ||||||||||||||||| |||||    
T  24364310 atgcaagtaaaagacttaaaagt 24364288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 245
Target Start/End: Complemental strand, 19924240 - 19924206
Alignment:
Q  211 gttcatcaaattcataggttgctttatgaacaaga 245  Q
    |||||||||||||||||||||||||||||||||||    
T  19924240 gttcatcaaattcataggttgctttatgaacaaga 19924206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 266
Target Start/End: Complemental strand, 21166426 - 21166352
Alignment:
Q  192 ttccagaaattgtatgaatgttcatcaaattcataggttgctttatgaacaagatgaagaaaactgttttttggt 266  Q
    ||||||||| ||||||||||||||||| |||| |   ||  |||||||||||||||||| |||||||||| ||||    
T  21166426 ttccagaaaatgtatgaatgttcatcatattcttgaatttgtttatgaacaagatgaaggaaactgttttatggt 21166352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 245
Target Start/End: Complemental strand, 25667502 - 25667468
Alignment:
Q  211 gttcatcaaattcataggttgctttatgaacaaga 245  Q
    |||||||||||||||||||||||||||||||||||    
T  25667502 gttcatcaaattcataggttgctttatgaacaaga 25667468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 22849430 - 22849476
Alignment:
Q  179 ttgtacaatcttcttccagaaattgtatgaatgttcatcaaattcat 225  Q
    |||| ||||||| ||||||||| ||||||||||||||||| ||||||    
T  22849430 ttgtgcaatctttttccagaaaatgtatgaatgttcatcatattcat 22849476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 245
Target Start/End: Original strand, 24878243 - 24878277
Alignment:
Q  211 gttcatcaaattcataggttgctttatgaacaaga 245  Q
    |||||||||||||||||||| ||||||||||||||    
T  24878243 gttcatcaaattcataggttactttatgaacaaga 24878277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 415
Target Start/End: Complemental strand, 25667376 - 25667330
Alignment:
Q  369 aaacttaaagaaaaggtaaattgaattgcattaatgtaaaggtggtt 415  Q
    |||||||||||||||||||| || |||||||||| ||| ||||||||    
T  25667376 aaacttaaagaaaaggtaaactgcattgcattaaagtataggtggtt 25667330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 402
Target Start/End: Original strand, 24878367 - 24878404
Alignment:
Q  365 gcagaaacttaaagaaaaggtaaattgaattgcattaa 402  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  24878367 gcagaaacttaaagaaaagataaattgcattgcattaa 24878404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 8e-28; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 205 - 328
Target Start/End: Original strand, 13966273 - 13966395
Alignment:
Q  205 atgaatgttcatcaaattcataggttgctttatgaacaagatgaagaaaactgttttttggtatgaaggcaactgtctttcgacagaaatcagtaaataa 304  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||||||  |||||| |||||||| ||| ||||||| | |||| || |||||| ||    
T  13966273 atgaatgttcatcatattcataggttgttttatgaacaagatgaagaaaaccatttttt-gtatgaagacaagtgtctttggccagagataagtaaagaa 13966371  T
Q  305 aatgcaagtaaaagacttgaaagt 328  Q
    ||||||||||||||| || |||||    
T  13966372 aatgcaagtaaaagatttaaaagt 13966395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 215 - 320
Target Start/End: Original strand, 13962747 - 13962851
Alignment:
Q  215 atcaaattcataggttgctttatgaacaagatgaagaaaactgttttttggtatgaaggcaactgtctttcgacagaaatcagtaaataaaatgcaagta 314  Q
    |||| |||||||||||| ||||||||||||||||||||||| ||||||| ||||||||  || | |||||||||||| || |||||| ||||||||||||    
T  13962747 atcatattcataggttgttttatgaacaagatgaagaaaaccgtttttt-gtatgaagataattctctttcgacagagataagtaaagaaaatgcaagta 13962845  T
Q  315 aaagac 320  Q
    ||||||    
T  13962846 aaagac 13962851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 328 - 415
Target Start/End: Complemental strand, 24633451 - 24633364
Alignment:
Q  328 taaagaaaatacaagtgaaaggctttaaagtttaaatgcagaaacttaaagaaaaggtaaattgaattgcattaatgtaaaggtggtt 415  Q
    ||||| |||| ||||| |||| ||||||||||| || |||||||||||||||||| |||||||| ||| ||||||||||||| |||||    
T  24633451 taaaggaaatgcaagtaaaagactttaaagttttaacgcagaaacttaaagaaaatgtaaattgcattacattaatgtaaagttggtt 24633364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 325 - 415
Target Start/End: Original strand, 13962826 - 13962917
Alignment:
Q  325 aagtaaagaaaatacaagtgaaaggctttaaagtttaaatgcagaaactt-aaagaaaaggtaaattgaattgcattaatgtaaaggtggtt 415  Q
    ||||||||||||| ||||| |||| | | |||||||||| ||| |||||| |||||||| |||||||| ||||||||| |||||||||||||    
T  13962826 aagtaaagaaaatgcaagtaaaagacatcaaagtttaaacgcataaactttaaagaaaatgtaaattgcattgcattagtgtaaaggtggtt 13962917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 212 - 293
Target Start/End: Original strand, 11821696 - 11821775
Alignment:
Q  212 ttcatcaaattcataggttgctttatgaacaagatgaagaaaactgttttttggtatgaaggcaactgtctttcgacagaaa 293  Q
    ||||||| |||||||||||||||||| |||||||| || ||||||||||||| ||||||||| || |||||||||| |||||    
T  11821696 ttcatcatattcataggttgctttataaacaagataaataaaactgtttttt-gtatgaaggtaa-tgtctttcgatagaaa 11821775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 196 - 253
Target Start/End: Complemental strand, 24633993 - 24633936
Alignment:
Q  196 agaaattgtatgaatgttcatcaaattcataggttgctttatgaacaagatgaagaaa 253  Q
    ||||||||||||||||||||||| ||||||||||| ||| ||||| ||||||||||||    
T  24633993 agaaattgtatgaatgttcatcatattcataggtttcttgatgaataagatgaagaaa 24633936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 250
Target Start/End: Complemental strand, 33379604 - 33379533
Alignment:
Q  179 ttgtacaatcttcttccagaaattgtatgaatgttcatcaaattcataggttgctttatgaacaagatgaag 250  Q
    |||| ||||||| || || ||| | ||||||||||||||| || ||||||||||||||||||||||||||||    
T  33379604 ttgtgcaatcttttttcataaagtatatgaatgttcatcatatccataggttgctttatgaacaagatgaag 33379533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 365 - 415
Target Start/End: Complemental strand, 44787454 - 44787404
Alignment:
Q  365 gcagaaacttaaagaaaaggtaaattgaattgcattaatgtaaaggtggtt 415  Q
    ||||||||||||||||||||||||||| |||||| |||||||| |||||||    
T  44787454 gcagaaacttaaagaaaaggtaaattgcattgcaataatgtaacggtggtt 44787404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 245
Target Start/End: Original strand, 17615146 - 17615180
Alignment:
Q  211 gttcatcaaattcataggttgctttatgaacaaga 245  Q
    |||||||||||||||||||||||||||||||||||    
T  17615146 gttcatcaaattcataggttgctttatgaacaaga 17615180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 245
Target Start/End: Original strand, 20866109 - 20866143
Alignment:
Q  211 gttcatcaaattcataggttgctttatgaacaaga 245  Q
    |||||||||||||||||||||||||||||||||||    
T  20866109 gttcatcaaattcataggttgctttatgaacaaga 20866143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 208 - 241
Target Start/End: Original strand, 16083531 - 16083564
Alignment:
Q  208 aatgttcatcaaattcataggttgctttatgaac 241  Q
    ||||||||||||||||||||||||||||||||||    
T  16083531 aatgttcatcaaattcataggttgctttatgaac 16083564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 345 - 415
Target Start/End: Original strand, 25018622 - 25018693
Alignment:
Q  345 aaaggctttaaagtttaaatgcagaaacttaaagaaaaggtaaattgaattgcatt--aatgtaaaggtggtt 415  Q
    |||| ||| |||||||||| |||||||||||||| |||||||||||| ||||||||  ||| |||||||||||    
T  25018622 aaagacttaaaagtttaaacgcagaaacttaaag-aaaggtaaattgcattgcatttaaatataaaggtggtt 25018693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 264
Target Start/End: Complemental strand, 22785316 - 22785253
Alignment:
Q  201 ttgtatgaatgttcatcaaattcataggttgctttatgaacaagatgaagaaaactgttttttg 264  Q
    |||| ||||||||||||| ||| |||| ||| || |||||| ||||||| ||||||||||||||    
T  22785316 ttgtttgaatgttcatcatatttatagtttgtttcatgaacgagatgaataaaactgttttttg 22785253  T

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Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 416
Target Start/End: Complemental strand, 33379453 - 33379406
Alignment:
Q  369 aaacttaaagaaaaggtaaattgaattgcattaatgtaaaggtggttt 416  Q
    |||||||||||||| ||| |||| ||||||||||||||||| ||||||    
T  33379453 aaacttaaagaaaacgtagattgcattgcattaatgtaaagctggttt 33379406  T

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Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 289
Target Start/End: Complemental strand, 4521832 - 4521749
Alignment:
Q  204 tatgaatgttcatcaaattcataggttgctttatgaacaagatgaagaaaactgttttttggtatgaaggcaactgtctttcgaca 289  Q
    |||||| |||||||| ||||||  |||  ||||||||||||||||| ||||||||||| ||  ||||||  ||| |||||||||||    
T  4521832 tatgaaagttcatcatattcatgagtttgtttatgaacaagatgaataaaactgttttgtg--atgaagataaccgtctttcgaca 4521749  T

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Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 250
Target Start/End: Complemental strand, 44787576 - 44787530
Alignment:
Q  204 tatgaatgttcatcaaattcataggttgctttatgaacaagatgaag 250  Q
    ||||||||||||||| ||||||| |||||||||||||  ||||||||    
T  44787576 tatgaatgttcatcatattcataagttgctttatgaaagagatgaag 44787530  T

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Target: scaffold0167 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 766 - 694
Alignment:
Q  178 gttgtacaatcttcttccagaaattgtatgaatgttcatcaaattcataggttgctttatgaacaagatgaag 250  Q
    ||||| ||||||| ||||| ||| |||||||||||| | ||| |||||||||||||||||||||| |||||||    
T  766 gttgtgcaatctttttccataaaatgtatgaatgttaaccaagttcataggttgctttatgaacaggatgaag 694  T

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Target: scaffold0167; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 369 - 416
Target Start/End: Complemental strand, 10392 - 10345
Alignment:
Q  369 aaacttaaagaaaaggtaaattgaattgcattaatgtaaaggtggttt 416  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  10392 aaacttaaagaaaaggtaaattgcattacattaatgtaaaggtggttt 10345  T

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Target: scaffold0148 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 207 - 317
Target Start/End: Original strand, 22877 - 22984
Alignment:
Q  207 gaatgttcatcaaattcataggttgctttatgaacaagatgaagaaaactgttttttggtatgaaggcaactgtctttcgacagaaatcagtaaataaaa 306  Q
    |||||||||||| |||||||| ||| |||||||||||||| || ||||||| ||| |  |||||||  || || |||||||||||||| |||||| || |    
T  22877 gaatgttcatcatattcatagtttg-tttatgaacaagataaataaaactgctttgt--tatgaagataattgcctttcgacagaaataagtaaagaaca 22973  T
Q  307 tgcaagtaaaa 317  Q
    |||||||||||    
T  22974 tgcaagtaaaa 22984  T

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Target: scaffold0003 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 184 - 246
Target Start/End: Original strand, 89617 - 89679
Alignment:
Q  184 caatcttcttccagaaattgtatgaatgttcatcaaattcataggttgctttatgaacaagat 246  Q
    ||||||| ||||| ||| | ||||||||||||||| |||||||||||| ||||||||||||||    
T  89617 caatctttttccataaaatatatgaatgttcatcatattcataggttgttttatgaacaagat 89679  T

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Target: scaffold0337 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 245
Target Start/End: Original strand, 4435 - 4469
Alignment:
Q  211 gttcatcaaattcataggttgctttatgaacaaga 245  Q
    |||||||||||||||||||||||||||||||||||    
T  4435 gttcatcaaattcataggttgctttatgaacaaga 4469  T

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Target: scaffold0337; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 245
Target Start/End: Original strand, 17110 - 17144
Alignment:
Q  211 gttcatcaaattcataggttgctttatgaacaaga 245  Q
    |||||||||||||||||||||||||||||||||||    
T  17110 gttcatcaaattcataggttgctttatgaacaaga 17144  T

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Target: scaffold0320 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 415
Target Start/End: Original strand, 6392 - 6438
Alignment:
Q  369 aaacttaaagaaaaggtaaattgaattgcattaatgtaaaggtggtt 415  Q
    ||||||||||||||||||||||| ||| |||||||||||||| ||||    
T  6392 aaacttaaagaaaaggtaaattgcattacattaatgtaaaggcggtt 6438  T

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Target: scaffold0024 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 415
Target Start/End: Complemental strand, 39057 - 38957
Alignment:
Q  314 aaaagacttgaaa--gtaaagaaaatacaagtgaaaggctttaaa-gtttaaat-gcagaaacttaaagaaaaggtaaattgaattgcattaatgtaaag 409  Q
    |||||||||||||  |||||| |||||||||| |||| ||||||| |||||||  ||| ||||||||||||||| ||     ||||||||||||||||||    
T  39057 aaaagacttgaaaaagtaaaggaaatacaagtcaaagactttaaatgtttaaaacgcataaacttaaagaaaagata-----aattgcattaatgtaaag 38963  T
Q  410 gtggtt 415  Q
    ||||||    
T  38962 gtggtt 38957  T

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Target: scaffold0142 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 245
Target Start/End: Original strand, 20431 - 20463
Alignment:
Q  213 tcatcaaattcataggttgctttatgaacaaga 245  Q
    |||||||||||||||||||||||||||||||||    
T  20431 tcatcaaattcataggttgctttatgaacaaga 20463  T

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Target: scaffold0039 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 33488 - 33435
Alignment:
Q  192 ttccagaaattgtatgaatgttcatcaaattcataggttgctttatgaacaaga 245  Q
    ||||||||| ||  ||| ||||||||| | ||||||||||||||||||||||||    
T  33488 ttccagaaagtgagtgagtgttcatcagactcataggttgctttatgaacaaga 33435  T

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