View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18626_low_7 (Length: 419)

Name: NF18626_low_7
Description: NF18626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18626_low_7
NF18626_low_7
[»] chr2 (3 HSPs)
chr2 (70-194)||(33174096-33174218)
chr2 (266-394)||(33174290-33174416)
chr2 (270-341)||(35248498-35248569)
[»] chr8 (2 HSPs)
chr8 (1-50)||(5361620-5361669)
chr8 (295-343)||(17108301-17108349)
[»] chr4 (1 HSPs)
chr4 (279-338)||(39086071-39086130)
[»] chr1 (2 HSPs)
chr1 (268-343)||(42729059-42729134)
chr1 (92-171)||(36617137-36617216)
[»] chr3 (3 HSPs)
chr3 (74-172)||(55224112-55224209)
chr3 (296-340)||(14216406-14216450)
chr3 (295-339)||(27937664-27937708)
[»] chr5 (3 HSPs)
chr5 (6-50)||(26532707-26532751)
chr5 (295-340)||(24207612-24207657)
chr5 (277-341)||(35584024-35584088)
[»] chr7 (1 HSPs)
chr7 (277-340)||(11472830-11472893)
[»] chr6 (1 HSPs)
chr6 (277-336)||(34346136-34346195)


Alignment Details
Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 70 - 194
Target Start/End: Original strand, 33174096 - 33174218
Alignment:
Q  70 cacttgaagatgacggtgaccaagagagtgaagatgatgacgagaccaagagtgattcatgttgtaaatttatgagaatgagatcgattgagaagatatg 169  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  33174096 cacttgaagatgatggtgacaaagagagtgaagatgatgacgagaccaagagcgattcatgttataaatttatgagaatgagatcgattgagaagatatg 33174195  T
Q  170 atggtgtttgatggttatggtgatg 194  Q
    |||| |  |||||||||| ||||||    
T  33174196 atggcg--tgatggttatagtgatg 33174218  T

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Target: chr2; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 266 - 394
Target Start/End: Original strand, 33174290 - 33174416
Alignment:
Q  266 tattatttgacagactgagattctgactatgtgagtgaagttgtttagggtttatgtttctatttatataaaagggatnnnnnnnnntctacattcggca 365  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||         |||||||||||||    
T  33174290 tattgtttgacagactgagattctgactatgtgagtgaagttgtttagggtttgggtttctatttatataaaagggat--aaaaaaatctacattcggca 33174387  T
Q  366 cggatttgagaaagggtttggggtgggtg 394  Q
    |||| ||||||||||||||||||||||||    
T  33174388 cggacttgagaaagggtttggggtgggtg 33174416  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 270 - 341
Target Start/End: Complemental strand, 35248569 - 35248498
Alignment:
Q  270 atttgacagactgagattctgactatgtgagtgaagttgtttagggtttatgtttctatttatataaaaggg 341  Q
    |||||| ||||||||| |||| || |||||||||| |  ||||||||||   ||||||||||||||||||||    
T  35248569 atttgaaagactgagactctgtctgtgtgagtgaaatgatttagggtttcattttctatttatataaaaggg 35248498  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 5361669 - 5361620
Alignment:
Q  1 ttcattgtaaatatttttacacggtcaataaatcgtaaacgtcaaatcat 50  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5361669 ttcattgtaaatatttttacacggtcaataaatcgtaaacgtcaaatcat 5361620  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 343
Target Start/End: Original strand, 17108301 - 17108349
Alignment:
Q  295 tgtgagtgaagttgtttagggtttatgtttctatttatataaaagggat 343  Q
    |||||||||| || ||||||||||| |||||||||||||||||| ||||    
T  17108301 tgtgagtgaaattatttagggtttaagtttctatttatataaaatggat 17108349  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 338
Target Start/End: Original strand, 39086071 - 39086130
Alignment:
Q  279 actgagattctgactatgtgagtgaagttgtttagggtttatgtttctatttatataaaa 338  Q
    ||||||| ||||||| |||||||||| |  ||||||||||| ||||||||||||||||||    
T  39086071 actgagagtctgactgtgtgagtgaaatgatttagggtttaagtttctatttatataaaa 39086130  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 268 - 343
Target Start/End: Complemental strand, 42729134 - 42729059
Alignment:
Q  268 ttatttgacagactgagattctgactatgtgagtgaagttgtttagggtttatgtttctatttatataaaagggat 343  Q
    |||| ||| ||||||||| ||||||| |||||||||| |  ||||| || || |||||||||||||||||||||||    
T  42729134 ttatctgaaagactgagactctgactgtgtgagtgaaatgatttagtgtataagtttctatttatataaaagggat 42729059  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 92 - 171
Target Start/End: Original strand, 36617137 - 36617216
Alignment:
Q  92 agagagtgaagatgatgacgagaccaagagtgattcatgttgtaaatttatgagaatgagatcgattgagaagatatgat 171  Q
    |||||||||| |||| |  |||| | |||| |||||| ||||||||| | ||||| ||||||||||| ||||||||||||    
T  36617137 agagagtgaatatgagggtgagagcgagagcgattcacgttgtaaatctgtgagagtgagatcgattaagaagatatgat 36617216  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 172
Target Start/End: Complemental strand, 55224209 - 55224112
Alignment:
Q  74 tgaagatgacggtgaccaagagagtgaagatgatgacgagaccaagagtgattcatgttgtaaatttatgagaatgagatcgattgagaagatatgatg 172  Q
    ||||||||| |||||| ||||||| | |||| ||| | |||||||||| || |||  |||||||| ||||| | ||||||||||| |||||||||||||    
T  55224209 tgaagatgatggtgacgaagagagcggagataatggcaagaccaagagcgaatcacattgtaaatctatga-agtgagatcgattaagaagatatgatg 55224112  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 14216406 - 14216450
Alignment:
Q  296 gtgagtgaagttgtttagggtttatgtttctatttatataaaagg 340  Q
    ||||||||| |||||||||||||  |||||| |||||||||||||    
T  14216406 gtgagtgaaattgtttagggtttgagtttctttttatataaaagg 14216450  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 339
Target Start/End: Original strand, 27937664 - 27937708
Alignment:
Q  295 tgtgagtgaagttgtttagggtttatgtttctatttatataaaag 339  Q
    |||||||||| |  ||||||||||| |||||||||||||||||||    
T  27937664 tgtgagtgaaatgatttagggtttaggtttctatttatataaaag 27937708  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 26532707 - 26532751
Alignment:
Q  6 tgtaaatatttttacacggtcaataaatcgtaaacgtcaaatcat 50  Q
    |||||||||||||||||||||||| ||| |||| |||||||||||    
T  26532707 tgtaaatatttttacacggtcaatcaattgtaatcgtcaaatcat 26532751  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 340
Target Start/End: Original strand, 24207612 - 24207657
Alignment:
Q  295 tgtgagtgaagttgtttagggtttatgtttctatttatataaaagg 340  Q
    ||||||||||||| ||||||||||  |||| |||||||||||||||    
T  24207612 tgtgagtgaagttatttagggttttagtttttatttatataaaagg 24207657  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 341
Target Start/End: Original strand, 35584024 - 35584088
Alignment:
Q  277 agactgagattctgactatgtgagtgaagttgtttagggtttatgtttctatttatataaaaggg 341  Q
    ||||||||| ||||||| ||||||  || |  ||||||||||  |||||||||||||||||||||    
T  35584024 agactgagactctgactgtgtgagcaaaatgatttagggtttgagtttctatttatataaaaggg 35584088  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 277 - 340
Target Start/End: Complemental strand, 11472893 - 11472830
Alignment:
Q  277 agactgagattctgactatgtgagtgaagttgtttagggtttatgtttctatttatataaaagg 340  Q
    ||||||||| ||| |||| ||||||||| |  ||||||||||  ||||||||||||||||||||    
T  11472893 agactgagactctaactacgtgagtgaaatgatttagggttttggtttctatttatataaaagg 11472830  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 277 - 336
Target Start/End: Complemental strand, 34346195 - 34346136
Alignment:
Q  277 agactgagattctgactatgtgagtgaagttgtttagggtttatgtttctatttatataa 336  Q
    ||||||||| ||||||| |||||||||| |  ||||||||||  ||||||||||||||||    
T  34346195 agactgagactctgactgtgtgagtgaaatgatttagggtttgggtttctatttatataa 34346136  T

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