View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18626_low_8 (Length: 376)
Name: NF18626_low_8
Description: NF18626
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18626_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 243 - 358
Target Start/End: Original strand, 1861153 - 1861272
Alignment:
| Q |
243 |
tagtctaaatgaatcgaaattgaactgattttattaatttatttttcaatcgattaaactatgctcaaaaggtttcactaatttga----cgtatgggtt |
338 |
Q |
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| T |
1861153 |
tagtctaaatgaatcggaattgaactgattttattaatttattttctaatggattaaactatgctcaaaaggtttcactaatttgaccttcgtatgggtt |
1861252 |
T |
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| Q |
339 |
taaaattttgtaccacaaat |
358 |
Q |
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| T |
1861253 |
taaaattttgtaccacaaat |
1861272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 77 - 220
Target Start/End: Original strand, 1860875 - 1861024
Alignment:
| Q |
77 |
ttttttacagtgtagttgactacta-----tgttgttcatc-accacaaatattttgaaaatcagacgactgaagattaattcaataaattgaatcaaaa |
170 |
Q |
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| T |
1860875 |
ttttttacagtgtagttcactactacttgttgttattcagccaccacaaatcttttgaaaatcagatgatcgaagattaattcaataaattgaaccaaaa |
1860974 |
T |
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| Q |
171 |
attgatcaagttattctttttaaggaaaaaattgatcaagttattgattg |
220 |
Q |
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| T |
1860975 |
attgatcaagttattttttttaaggaaaaaattgatcaagttattgattg |
1861024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 1860761 - 1860806
Alignment:
| Q |
18 |
atgatagacacccaaaatcaattaatgcttaaaaacgattttaggt |
63 |
Q |
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| T |
1860761 |
atgatagacacccaaaatcaattaatgcttaaaaacgattttaggt |
1860806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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