View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18627_high_2 (Length: 749)
Name: NF18627_high_2
Description: NF18627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18627_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 613; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 7 - 734
Target Start/End: Complemental strand, 40479596 - 40478869
Alignment:
| Q |
7 |
atgtcgaagaatattagacaactaggaagaaagtgaggagaagttgtgtcctcttgcagtcatttctgacgggtaattgagatggacgtgtactactacg |
106 |
Q |
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| T |
40479596 |
atgtcaaagaatattagacaactaggaagaaagtgaggagaagttgtgtcctcttgcagtcatttctgacgggtaattgagatggacgtgtactactacg |
40479497 |
T |
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| Q |
107 |
acgtaagaagagatacgatgaagatgatgcttgcttccattattattatacaaa----ctggaacgttgaatatctaacatcactttcaaacatgttttg |
202 |
Q |
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| T |
40479496 |
acgtaagaagagatacgatgaagatgatgcttgcttgcattattattatacaaattaactggaacgttgaatatctaacatcactttcaaacatgttttg |
40479397 |
T |
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| Q |
203 |
aaattaaggtaaagatagtttattgaagaaggaaatagttaaaaacaatagcttgagtataagaataaaacagatcaacataaattatatgaaatggaaa |
302 |
Q |
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| T |
40479396 |
aaattaaggtaaagataatttattgaagaaggaaatagttaaaaacaatagcttgagtataataataaaacagatcaacataaattatatgaaatggaaa |
40479297 |
T |
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| Q |
303 |
gcttaaaataaaaccctaactaattaaaccaacataaattatatcatcaaccaaatggtaaaattactttaagtaactgttttatggtctatggatgtat |
402 |
Q |
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| T |
40479296 |
gcttaaaataaaaccctaactaa----accaacataaattatatcatcaaccaaatggtaaaattactttaagtaactgttttatggtctatggatgtat |
40479201 |
T |
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| Q |
403 |
taattaattaattgtggtgaatatctcttattaaatcctttccctgcgacatgtggtttgtggatacctttttctagaatattttcatcctttttaggtt |
502 |
Q |
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| T |
40479200 |
taattaattaattgaggtgattatcactttttaaacccttaccctgagacaagtggattgtggatacctttttctagaatattttcatccattttaggtt |
40479101 |
T |
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| Q |
503 |
atctgaatcaagttagatggagaatatttggcatctggaaacttatttaattattaggttcgaccgtttgaaaacgtgcccatttagttaattattgttt |
602 |
Q |
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| T |
40479100 |
atctgaatcaagttagatggagaatatttggcatctggaaacttatttaattattaggttcgaccgtttgaaaacgtgcccatttagttaattattgttt |
40479001 |
T |
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| Q |
603 |
cttttccttcattatcagataattgagatttgagagtacttattagtggagtagtccttcgtgctacgttttttgttaccttgaacagaaaataaaagac |
702 |
Q |
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| T |
40479000 |
attttccttcattatcagataattgagatttgagagtacttattagtggagtagtccttcgtgctacgttttttgttaccttaaacagaaaataaaagac |
40478901 |
T |
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| Q |
703 |
tccannnnnnnatataattgcttttgcatatt |
734 |
Q |
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| T |
40478900 |
tccatttttttatataattgcttttgcatatt |
40478869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 40471513 - 40471475
Alignment:
| Q |
156 |
acaaactggaacgttgaatatctaacatcactttcaaac |
194 |
Q |
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| T |
40471513 |
acaaactgcaacgttgaatatctatcatcactttcaaac |
40471475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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