View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18627_high_3 (Length: 707)

Name: NF18627_high_3
Description: NF18627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18627_high_3
NF18627_high_3
[»] chr4 (1 HSPs)
chr4 (61-703)||(33151485-33152133)
[»] chr2 (20 HSPs)
chr2 (382-698)||(2362346-2362664)
chr2 (119-278)||(2361634-2361793)
chr2 (467-546)||(39604094-39604173)
chr2 (466-546)||(39099364-39099444)
chr2 (456-600)||(39131084-39131228)
chr2 (608-698)||(39493636-39493729)
chr2 (454-572)||(39189077-39189195)
chr2 (454-600)||(39425828-39425974)
chr2 (507-588)||(39421490-39421571)
chr2 (495-546)||(39138452-39138503)
chr2 (506-670)||(39396880-39397041)
chr2 (608-698)||(39144488-39144581)
chr2 (608-698)||(39604208-39604301)
chr2 (608-662)||(39196746-39196800)
chr2 (608-662)||(39223606-39223660)
chr2 (289-339)||(39603378-39603428)
chr2 (269-337)||(2361910-2361978)
chr2 (510-546)||(39152880-39152916)
chr2 (105-177)||(39415106-39415178)
chr2 (454-546)||(39473095-39473187)
[»] chr3 (4 HSPs)
chr3 (482-681)||(51575757-51575953)
chr3 (51-182)||(51574581-51574712)
chr3 (269-313)||(51575382-51575426)
chr3 (134-220)||(51574953-51575039)
[»] chr7 (1 HSPs)
chr7 (506-546)||(19808312-19808352)
[»] chr5 (1 HSPs)
chr5 (527-668)||(33562103-33562241)


Alignment Details
Target: chr4 (Bit Score: 587; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 61 - 703
Target Start/End: Original strand, 33151485 - 33152133
Alignment:
Q  61 tgaaggtcgggttacggagtttaaatcaaaagaagaggaatgtaaaggtcaagtgaaggatcttgaatcatttaagaagcattttgaaagccagctgaag 160  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  33151485 tgaaggtcgggttacggagtttaaatcaaaagaagaggaatttaaaggtcaagtgaaggatcttgaatcatttaagaagcattt-gaaagccagctgaag 33151583  T
Q  161 ggacttggatcaaaagagaagcaatatgaaggacgaatgcaggagctggagtccaaagagaaatattttcaaggacgagtgaaggagtttggattaaaag 260  Q
    |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33151584 ggacttagatcaaaagagaagcaatatgaaggacgaatgcaggaactggagtccaaagagaaatattttcaaggacgagtgaaggagtttggattaaaag 33151683  T
Q  261 agcgtgaatttgaaggccgagtacgggagtttgaatcaaaagaagaggaatttaaaggccgagtgagggagtttgaagtcaatgcagaataacttcgatg 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33151684 agcgtgaatttgaaggccgagtacgggagtttgaatcaaaagaagaggaatttaaaggccgagtgagggagtttgaagtcaatgcagaataacttcgatg 33151783  T
Q  361 cagaatatgaaacatttataaaatcaggtaaatgttcttaatctagtttaatgagacaat----tttcaacatgatcttttcttgattttgatattttta 456  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||    
T  33151784 cagaatatgaaacattaataaaatcaggtaaatgttcttaatctagtttaatgagacaatttaatttcaacatgatcttttcttgattttgatattttta 33151883  T
Q  457 aatatgtcctagctaattatgcaattacatcttttacagatgatcaaccaagtcctaccattgatggaagaagtttgcagttgctcccaattgagcaaat 556  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33151884 aatatgtcctagctaattatgcaattacatcttttacagatgatcaaccaagtcctaccattgatggaagaagtttgcagttgctcccaattgagcaaat 33151983  T
Q  557 tgatgaacttgagtcacgtggcaatgacattctagctaatctgctag---catcatcatcagatccatcaaaatatgttttggatattatccagaacccc 653  Q
    |||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33151984 tgatgaacttgagtcacgtggcaatgacattctagctaatctgctagcatcatcatcatcagatccatcaaaatatgttttggatattatccagaacccc 33152083  T
Q  654 atcattccattgtgtaaaggagacaatgctgcaattattgatgatgtcca 703  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  33152084 atcattccattgtgtaagggagacaatgctgcaattattgatgatttcca 33152133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 180; Significance: 8e-97; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 180; E-Value: 8e-97
Query Start/End: Original strand, 382 - 698
Target Start/End: Original strand, 2362346 - 2362664
Alignment:
Q  382 aatcaggtaaatgttcttaatctagtttaatgagacaattt----tcaacatgatcttttcttgattttgatatttttaaatatgtcctagctaattatg 477  Q
    ||||||||||| | |||| |||||||||||||||||| |||    ||||| ||||||||  | ||||| ||||||||||||||| |   |||||||||||    
T  2362346 aatcaggtaaaagctcttcatctagtttaatgagacattttaatttcaacttgatctttaat-gattt-gatatttttaaatatatgacagctaattatg 2362443  T
Q  478 caattacatcttttacagatgatcaaccaagtcctaccattgatggaagaagtttgcagttgctcccaattgagcaaattgatgaacttgagtcacgtgg 577  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||    
T  2362444 caatttcatctttcacagatgatcaaccaagtcctaccattgatggaagaagtttgcagtttctcccaattgaggaaattgatgaacttgagtcacatgg 2362543  T
Q  578 caatgacattctagctaatctgctagcatcatcatcagatccatcaaaatatgttttggatattatccagaaccccatcattccattgtgtaaaggagac 677  Q
    ||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||  |||||| |||||     
T  2362544 caacgacagtctagctaatctgctagcatcatcatcagatccatcaaaagatgttttagatataatccagaaccccatcattccacagtgtaagggagaa 2362643  T
Q  678 aatgctgcaattattgatgat 698  Q
    |||| || |||||||||||||    
T  2362644 aatgttgtaattattgatgat 2362664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 119 - 278
Target Start/End: Original strand, 2361634 - 2361793
Alignment:
Q  119 gatcttgaatcatttaagaagcattttgaaagccagctgaagggacttggatcaaaagagaagcaatatgaaggacgaatgcaggagctggagtccaaag 218  Q
    ||||| |||||||| ||| ||||||||| |||||| |||||||||||   |||||||||||||  || |||| |||| ||| ||||| || |||| ||||    
T  2361634 gatctggaatcattcaaggagcattttggaagccaactgaagggactcaaatcaaaagagaagatatttgaaagacggatgaaggagttgaagtcaaaag 2361733  T
Q  219 agaaatattttcaaggacgagtgaaggagtttggattaaaagagcgtgaatttgaaggcc 278  Q
    || || |||||||| |||| ||||||| ||||||||||| |||| |||| ||||||||||    
T  2361734 aggaacattttcaaagacgggtgaaggtgtttggattaagagagtgtgattttgaaggcc 2361793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 467 - 546
Target Start/End: Original strand, 39604094 - 39604173
Alignment:
Q  467 agctaattatgcaattacatcttttacagatgatcaaccaagtcctaccattgatggaagaagtttgcagttgctcccaa 546  Q
    |||||| |||||| |||||| ||  |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  39604094 agctaaatatgcagttacatgttacacagatgatcaatcaactcctaccattgatggaagaagtttgcagttgctcccaa 39604173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 466 - 546
Target Start/End: Original strand, 39099364 - 39099444
Alignment:
Q  466 tagctaattatgcaattacatcttttacagatgatcaaccaagtcctaccattgatggaagaagtttgcagttgctcccaa 546  Q
    ||||||| |||||| |||| | ||  |||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||    
T  39099364 tagctaaatatgcagttacttgttacacagatgatcaatcaactcctaccattgatggaagaagtttgaagttgctcccaa 39099444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 456 - 600
Target Start/End: Original strand, 39131084 - 39131228
Alignment:
Q  456 aaatatgtcctagctaattatgcaattacatcttttacagatgatcaaccaagtcctaccattgatggaagaagtttgcagttgctcccaattgagcaaa 555  Q
    |||||||| ||| ||||||||||| |||| || |  |||| | |||||  |||||| |||||||||| ||||||||||  ||||||||||  ||||| ||    
T  39131084 aaatatgtgctacctaattatgcagttacgtcgtacacaggtaatcaattaagtcccaccattgatgaaagaagtttgatgttgctcccatgtgagctaa 39131183  T
Q  556 ttgatgaacttgagtcacgtggcaatgacattctagctaatctgc 600  Q
     ||||||||||||||    || | |||||||||||| ||||||||    
T  39131184 ctgatgaacttgagttgtctgactatgacattctaggtaatctgc 39131228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 608 - 698
Target Start/End: Complemental strand, 39493729 - 39493636
Alignment:
Q  608 atcatcagatccatcaaaatatgttttggatattatccagaaccccatcattccattgtgtaa---aggagacaatgctgcaattattgatgat 698  Q
    |||||||||||||||||||  |||||||||||| || ||||||||||| |||  |  ||||||   ||||||| ||||||||||||||||||||    
T  39493729 atcatcagatccatcaaaagttgttttggatataatacagaaccccattattaaaaagtgtaagataggagacgatgctgcaattattgatgat 39493636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 454 - 572
Target Start/End: Complemental strand, 39189195 - 39189077
Alignment:
Q  454 ttaaatatgtcctagctaattatgcaattacatcttttacagatgatcaaccaagtcctaccattgatggaagaagtttgcagttgctcccaattgagca 553  Q
    |||||||| | ||||||||||||||| ||||||| |  |||| | |||||  |||||| ||| |||||| ||||||||||  ||||||||||  ||| ||    
T  39189195 ttaaatatctgctagctaattatgcagttacatcgtacacaggtaatcaattaagtcccaccgttgatgaaagaagtttgatgttgctcccatgtgatca 39189096  T
Q  554 aattgatgaacttgagtca 572  Q
    || ||| ||||||||||||    
T  39189095 aactgacgaacttgagtca 39189077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 454 - 600
Target Start/End: Complemental strand, 39425974 - 39425828
Alignment:
Q  454 ttaaatatgtcctagctaattatgcaattacatcttttacagatgatcaaccaagtcctaccattgatggaagaagtttgcagttgctcccaattgagca 553  Q
    |||||||||| ||||||||||||||| ||||||| |  |||  | |||||  ||||||  ||||||||| ||||||||||  ||||||||||  ||||||    
T  39425974 ttaaatatgtgctagctaattatgcagttacatcgtacacatgtaatcaattaagtcccgccattgatgaaagaagtttgatgttgctcccatgtgagca 39425875  T
Q  554 aattgatgaacttgagtcacgtggcaatgacattctagctaatctgc 600  Q
    ||  || ||||||||||    || | |||||||||||| ||||||||    
T  39425874 aacagaggaacttgagttgtctgacgatgacattctaggtaatctgc 39425828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 507 - 588
Target Start/End: Complemental strand, 39421571 - 39421490
Alignment:
Q  507 agtcctaccattgatggaagaagtttgcagttgctcccaattgagcaaattgatgaacttgagtcacgtggcaatgacattc 588  Q
    |||||| |||||| ||||| ||||||||||||||||||| ||||||| | |||||||| |||||| | |||  |||||||||    
T  39421571 agtcctgccattgttggaacaagtttgcagttgctcccatttgagcagactgatgaacctgagtcccctggtgatgacattc 39421490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 495 - 546
Target Start/End: Original strand, 39138452 - 39138503
Alignment:
Q  495 gatgatcaaccaagtcctaccattgatggaagaagtttgcagttgctcccaa 546  Q
    |||||||||  |||||| ||||||||||||| ||||||||||||||||||||    
T  39138452 gatgatcaattaagtccaaccattgatggaacaagtttgcagttgctcccaa 39138503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 506 - 670
Target Start/End: Complemental strand, 39397041 - 39396880
Alignment:
Q  506 aagtcctaccattgatggaagaagtttgcagttgctcccaattgagcaaattgatgaacttgagtcacgtggcaatgacattctagctaatctgctagca 605  Q
    |||||||||||||||||||| |||||||||||||  |   | |||  |||  |||| | ||||||||| | |||||||||||   | | ||||||||| |    
T  39397041 aagtcctaccattgatggaacaagtttgcagttggacatgagtgataaaaccgatggagttgagtcacttcgcaatgacatttatgtttatctgctagaa 39396942  T
Q  606 tcatcatcagatccatcaaaatatgttttggatattatccagaaccccatcattccattgtgtaa 670  Q
    ||||||   |||||||||| |  |||||||||||| || || |||||||| |||||| |||||||    
T  39396941 tcatca---gatccatcaagacttgttttggatataatacaaaaccccattattccactgtgtaa 39396880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 608 - 698
Target Start/End: Original strand, 39144488 - 39144581
Alignment:
Q  608 atcatcagatccatcaaaatatgttttggatattatccagaaccccatcattccattgtgtaa---aggagacaatgctgcaattattgatgat 698  Q
    |||||||||||||||||||  |||||||||||| || |||||||| || |||  |  ||||||   ||||||| |||||| |||||||||||||    
T  39144488 atcatcagatccatcaaaagttgttttggatataatacagaacccgattattaaaaagtgtaagataggagacgatgctgtaattattgatgat 39144581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 608 - 698
Target Start/End: Original strand, 39604208 - 39604301
Alignment:
Q  608 atcatcagatccatcaaaatatgttttggatattatccagaaccccatcattccattgtgtaa---aggagacaatgctgcaattattgatgat 698  Q
    |||||||||||||||||||  |||||||||||| || ||||| ||||| |||| |  || |||    ||||||||||||| |||||||||||||    
T  39604208 atcatcagatccatcaaaagttgttttggatataatacagaatcccattattcaaaagtataagatgggagacaatgctgtaattattgatgat 39604301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 608 - 662
Target Start/End: Complemental strand, 39196800 - 39196746
Alignment:
Q  608 atcatcagatccatcaaaatatgttttggatattatccagaaccccatcattcca 662  Q
    |||||||||||||||||||  ||||||||| || || | ||||||||||||||||    
T  39196800 atcatcagatccatcaaaacttgttttggaaatgatactgaaccccatcattcca 39196746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 608 - 662
Target Start/End: Original strand, 39223606 - 39223660
Alignment:
Q  608 atcatcagatccatcaaaatatgttttggatattatccagaaccccatcattcca 662  Q
    |||||||||||||||||||  ||||||||| || || | ||||||||||||||||    
T  39223606 atcatcagatccatcaaaacttgttttggaaatgatactgaaccccatcattcca 39223660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 289 - 339
Target Start/End: Original strand, 39603378 - 39603428
Alignment:
Q  289 gtttgaatcaaaagaagaggaatttaaaggccgagtgagggagtttgaagt 339  Q
    ||||||||||||||| |  ||||||||||  ||||||||||||||||||||    
T  39603378 gtttgaatcaaaagaggttgaatttaaagatcgagtgagggagtttgaagt 39603428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 269 - 337
Target Start/End: Original strand, 2361910 - 2361978
Alignment:
Q  269 tttgaaggccgagtacgggagtttgaatcaaaagaagaggaatttaaaggccgagtgagggagtttgaa 337  Q
    |||||| ||||||||  || |||||||||||||||  |||| ||| || ||||||||||| ||||||||    
T  2361910 tttgaaagccgagtaaaggggtttgaatcaaaagagaaggactttgaaagccgagtgaggaagtttgaa 2361978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 510 - 546
Target Start/End: Original strand, 39152880 - 39152916
Alignment:
Q  510 cctaccattgatggaagaagtttgcagttgctcccaa 546  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  39152880 cctactattgatggaacaagtttgcagttgctcccaa 39152916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 105 - 177
Target Start/End: Complemental strand, 39415178 - 39415106
Alignment:
Q  105 aaggtcaagtgaaggatcttgaatcatttaagaagcattttgaaagccagctgaagggacttggatcaaaaga 177  Q
    |||||| ||||||||| || ||||||   ||||||||||| |||||||| |||||||  |||| |||||||||    
T  39415178 aaggtcgagtgaaggagctggaatcagaaaagaagcatttcgaaagccaactgaaggagcttgaatcaaaaga 39415106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 454 - 546
Target Start/End: Complemental strand, 39473187 - 39473095
Alignment:
Q  454 ttaaatatgtcctagctaattatgcaattacatcttttacagatgatcaaccaagtcctaccattgatggaagaagtttgcagttgctcccaa 546  Q
    |||||||| | ||| |||| ||||||  ||||||||  |  |||||||||  |||||| |||| ||||| || ||||||||||||||||||||    
T  39473187 ttaaatatctgctatctaaatatgcagctacatcttacatggatgatcaattaagtccaaccactgatgaaacaagtttgcagttgctcccaa 39473095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 482 - 681
Target Start/End: Original strand, 51575757 - 51575953
Alignment:
Q  482 tacatcttttacagatgatcaaccaagtcctaccattgatggaagaagtttgcagttgctcccaattgagcaaattgatgaacttgagtcacgtggcaat 581  Q
    ||||||||| ||||| ||||| |||| |||| |||||||||||||||| |||||||| |||| | |||| || | ||| ||||||||||||| ||| |||    
T  51575757 tacatctttcacagaagatcatccaaatcctgccattgatggaagaagcttgcagtttctccgagttgaacagactgacgaacttgagtcacatggaaat 51575856  T
Q  582 gacattctagctaatctgctagcatcatcatcagatccatcaaaatatgttttggatattatccagaaccccatcattccattgtgtaaaggagacaatg 681  Q
    ||||||||||  ||||| ||||   |||| ||||||||||||||| ||||| ||||||| || ||||||| ||||||||||   ||||| ||||||||||    
T  51575857 gacattctagtcaatcttctag---catcctcagatccatcaaaagatgttctggatataatacagaaccacatcattccacattgtaagggagacaatg 51575953  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 51 - 182
Target Start/End: Original strand, 51574581 - 51574712
Alignment:
Q  51 aggaggaatttgaaggtcgggttacggagtttaaatcaaaagaagaggaatgtaaaggtcaagtgaaggatcttgaatcatttaagaagcattttgaaag 150  Q
    |||||| ||||||||||||||| | ||||||| |||||||||| ||||| | |||||  ||||||||||  ||||||  |   | |||||||||||||||    
T  51574581 aggaggcatttgaaggtcgggtgaaggagtttgaatcaaaagaggaggactttaaagtccaagtgaaggtacttgaaataaaaaggaagcattttgaaag 51574680  T
Q  151 ccagctgaagggacttggatcaaaagagaagc 182  Q
    |||| | ||||  || |||| |||||||||||    
T  51574681 ccagttaaaggagctcggattaaaagagaagc 51574712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 269 - 313
Target Start/End: Original strand, 51575382 - 51575426
Alignment:
Q  269 tttgaaggccgagtacgggagtttgaatcaaaagaagaggaattt 313  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||    
T  51575382 tttgaaggccgcgtaagggagtttgaatcaaaagaagaggaattt 51575426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 134 - 220
Target Start/End: Original strand, 51574953 - 51575039
Alignment:
Q  134 aagaagcattttgaaagccagctgaagggacttggatcaaaagagaagcaatatgaaggacgaatgcaggagctggagtccaaagag 220  Q
    ||||||||||||||||||||  |||||| |||   |||||||||||| |||| |||||||||  || ||||| ||| ||| ||||||    
T  51574953 aagaagcattttgaaagccaagtgaaggaactcaaatcaaaagagaaacaatttgaaggacgggtgaaggagatggcgtcaaaagag 51575039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 506 - 546
Target Start/End: Original strand, 19808312 - 19808352
Alignment:
Q  506 aagtcctaccattgatggaagaagtttgcagttgctcccaa 546  Q
    |||||| ||||||||||||| ||||||||||||||||||||    
T  19808312 aagtccaaccattgatggaacaagtttgcagttgctcccaa 19808352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 527 - 668
Target Start/End: Original strand, 33562103 - 33562241
Alignment:
Q  527 aagtttgcagttgctcccaattgagcaaattgatgaacttgagtcacgtggcaatgacattctagctaatctgctagcatcatcatcagatccatcaaaa 626  Q
    |||||||||||||  | ||| |||| ||| ||||| | ||||||||| |  |||||  ||| |||||||||||| || ||||   |||||||||||||||    
T  33562103 aagtttgcagttggacacaagtgagaaaactgatggagttgagtcactttacaatggtattttagctaatctgcaagaatca---tcagatccatcaaaa 33562199  T
Q  627 tatgttttggatattatccagaaccccatcattccattgtgt 668  Q
      ||||||||| || || | |||||||||| ||||| |||||    
T  33562200 cttgttttggaaatgatactgaaccccatctttccactgtgt 33562241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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