View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18627_high_5 (Length: 553)
Name: NF18627_high_5
Description: NF18627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18627_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 104; Significance: 1e-51; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 58 - 245
Target Start/End: Complemental strand, 40281007 - 40280817
Alignment:
| Q |
58 |
tttcattcagtttcttgctgcctt-gccctaataagtcttactaattcagaaaagaaacaaaaccaactcagtctcagaaatgatgaaca-ccatggcga |
155 |
Q |
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| T |
40281007 |
tttctttcagtttcttgctacctttgccctaataagtcttactgattcagaaaagaaacaaaaccaac--agtcttagagatgattaacaaccatggtga |
40280910 |
T |
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| Q |
156 |
tgcgcttgatgatgcatcatggcttacacgctcactctaacaggcatcatcatcatcttcat---cacctaggcctccaccatttgaatacac |
245 |
Q |
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| T |
40280909 |
tgcgtttgatgatgcatcatggcttacacgctcactctcacagccatcatcatcatcatcatcgccacctaggcctccaccatctgaatacac |
40280817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 499 - 553
Target Start/End: Complemental strand, 40280201 - 40280147
Alignment:
| Q |
499 |
cagttccaccaccattcccatgggccacttcgaaacgtgccatcttgcacacact |
553 |
Q |
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| T |
40280201 |
cagttccaccaccattcccatgggccacttcgaaacgtgccatcttgcacacact |
40280147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 499 - 553
Target Start/End: Original strand, 40458149 - 40458203
Alignment:
| Q |
499 |
cagttccaccaccattcccatgggccacttcgaaacgtgccatcttgcacacact |
553 |
Q |
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| T |
40458149 |
cagttccaccaccattcccatgggccacttcgaaacgtgccatcttgcacacact |
40458203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 306
Target Start/End: Complemental strand, 40280481 - 40280398
Alignment:
| Q |
220 |
cctaggcctccaccatttgaatacacgcagttaacaccacccacacgcctccctatttatccaaaaacattcttttattcccaactc |
306 |
Q |
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| T |
40280481 |
cctaggcctccaccatttgaatacacgccattaacaccctccacacg---ccctattgatcctcaaacattcttctattccgaactc |
40280398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 306
Target Start/End: Original strand, 40457869 - 40457952
Alignment:
| Q |
220 |
cctaggcctccaccatttgaatacacgcagttaacaccacccacacgcctccctatttatccaaaaacattcttttattcccaactc |
306 |
Q |
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| T |
40457869 |
cctagacctccaccatttgaatacacgccattaacaccctccacacg---ccctattgatcctcaaacattcttctattccgaactc |
40457952 |
T |
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