View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18627_high_7 (Length: 488)
Name: NF18627_high_7
Description: NF18627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18627_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 48 - 455
Target Start/End: Complemental strand, 2858672 - 2858268
Alignment:
| Q |
48 |
gtctaaactatttcctgttcaactatagtgctcttcagttataatatagtagaacacaatctatctaaactttgatgtactttctttcacaagttttagg |
147 |
Q |
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| T |
2858672 |
gtctaaactatttcctgttcaactatagtgctcttcggttataa---agtagaacacaatctatctaaactttgatgtactttctttcacaagttttagg |
2858576 |
T |
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| Q |
148 |
attttttcacacaccctattagatatcatattcaaataataatgtaagttattctnnnnnnnnnnnngctagtgataagaaaaaagatgatactatggat |
247 |
Q |
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| T |
2858575 |
attttttcacacaccctattagatatcatattcaaataataatgtaagttattctaaaaaagaaaaagctagtgataagaaaaaagatgatactatggat |
2858476 |
T |
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| Q |
248 |
agcattggaatatactttctttcattccatcgccatgtttttcattggttttctcctctcaaagattgggttgtttgaattctttatcttccttttttag |
347 |
Q |
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| T |
2858475 |
agcattggaat-tactttctttcattccatcgccatgtttttcattggttttgtcctctcaaagattgggttgtttgaattctttatcttccttttttag |
2858377 |
T |
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| Q |
348 |
ctacttcatccaactctgtataatttataagaccgatt-nnnnnnnntcaaaatttataggtattaatttgaaaattttcaaaatatgaggaccgatttg |
446 |
Q |
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|||||||||||| |||||| ||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2858376 |
ctacttcatccagctctgtttaatttataagactgattaaaaaaaaatcaaaatttataggtactaatttgaaaattttcaaaatatgaggaccgatttg |
2858277 |
T |
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| Q |
447 |
caaaatttt |
455 |
Q |
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| T |
2858276 |
caaaatttt |
2858268 |
T |
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