View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18627_high_8 (Length: 447)
Name: NF18627_high_8
Description: NF18627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18627_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 7e-90; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 1048816 - 1048608
Alignment:
| Q |
8 |
caccacagactttatgtttttataccgcaatcatattagtaaataaaaatgtagaaaatatattttttaattcctctatatgtataactttcattttagt |
107 |
Q |
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| T |
1048816 |
caccacagactttatgtttttataccgcaatcatattagtaaataaaaatgtagaaaatatattttttaattcctctatatgta--------------gt |
1048731 |
T |
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| Q |
108 |
ctctttgaaacacttcttcaaattttggttcctataaattttttgttatcaattttagtctttgtttgactaatcattatgttgaaggcaaattaatacc |
207 |
Q |
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| T |
1048730 |
ctcttcgaaacacttgttcaaattttggttcctataaattttttgttatcaattttagtctttgtttgactaatcattatgttgaaggcaaattaatacc |
1048631 |
T |
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| Q |
208 |
ataaacataaagtctttaaacta |
230 |
Q |
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| T |
1048630 |
ataaacataaagtctttaaacta |
1048608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 288 - 427
Target Start/End: Complemental strand, 1048614 - 1048475
Alignment:
| Q |
288 |
taaactatttggaaggacaatcacatggtaaatcctccaatgagaatcaaagcaaatgcagtttttgctgctgacaaataagaaatcgggaatataccaa |
387 |
Q |
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| T |
1048614 |
taaactatttggaaggacaatcacatggtaaatcttccaatgagaatcaaagcaaatgcagtttttgctgctgacaaataagaaatcgggaatataccaa |
1048515 |
T |
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| Q |
388 |
gacatatttcaaatctttacctacaaaattaggttggaag |
427 |
Q |
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| T |
1048514 |
gacatatttcaaatctttacctacaaaattaggttggaag |
1048475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 359 - 431
Target Start/End: Original strand, 1013514 - 1013586
Alignment:
| Q |
359 |
tgacaaataagaaatcgggaatataccaagacatatttcaaatctttacctacaaaattaggttggaagtaga |
431 |
Q |
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| T |
1013514 |
tgacaaataagcaatcaggaatataccaagttatatttcaaatctttacctacaaaattaggtagaaagtaga |
1013586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 431
Target Start/End: Complemental strand, 40639460 - 40639420
Alignment:
| Q |
391 |
atatttcaaatctttacctacaaaattaggttggaagtaga |
431 |
Q |
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| T |
40639460 |
atatttcaaatctttacctacaaaattaggtagaaagtaga |
40639420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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