View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18627_low_13 (Length: 303)
Name: NF18627_low_13
Description: NF18627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18627_low_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 283
Target Start/End: Original strand, 37377933 - 37378197
Alignment:
| Q |
19 |
gaacgtcgcaacaacgcaagggacgatattcatggatttggaagttcatggatgttcactatttgttctacattgcaagtagtttggcttcaaattattc |
118 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37377933 |
gaacgttgcaacaacgcaagggacgatattcatggatttggaagttcatggatgttcactatttgttctacattgcaagtagtttggcttcaaattattc |
37378032 |
T |
|
| Q |
119 |
atatattattacaaaggaaaattttgaacctcattcttgagctttgtttgagaattgagaagtgaggtgcgtaagtgttgcatcccaccatgctgtaaac |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
37378033 |
atatattattacaaaggaaaattttgaacctcattgttgagctttgtttgagaattgagaagtgaggtgcgtaagtgttgcatcccaccatgctgtatac |
37378132 |
T |
|
| Q |
219 |
gagttacgtaggtaacaagttgtgttaatagcctcgtgttttttccaacgtatgtgatagctagg |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37378133 |
gagttacgtaggtaacaagttgtgttaatagcctcgtgttttttccaacgtatgtgataggtagg |
37378197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 19 - 276
Target Start/End: Original strand, 37385345 - 37385623
Alignment:
| Q |
19 |
gaacgtcgcaacaacgcaagggacgatattcatggatttggaagttcatggatgttcactatttgttctacattgcaagtagtttggcttcaa-attatt |
117 |
Q |
| |
|
|||||||| |||||| ||||||||||||| | ||| ||||||||||||||||| |||||||||||||||||||||| |||||||| |||| | |||| |
|
|
| T |
37385345 |
gaacgtcgtaacaactcaagggacgatatcggttgatgtggaagttcatggatgtgcactatttgttctacattgcaactagtttggtctcaacactatt |
37385444 |
T |
|
| Q |
118 |
catatattattacaaaggaaa-----------------attttgaacctcattcttgagctttgtttgagaa--ttga-gaagtgaggtgcgtaagtgtt |
197 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||| |||| | ||||| || ||||||||| |
|
|
| T |
37385445 |
catatattattacaaaggaaagcaaaagaaaacggaaaattttgaacctcattgttgagctttttttgagatgtttgatgtggtgagatgtgtaagtgtt |
37385544 |
T |
|
| Q |
198 |
gcatcccaccatgctgtaaacgagttacgtaggtaacaagttgtgttaatagcctcgtgttttttccaacgtatgtgat |
276 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
37385545 |
gcatcccaccatactgtaaacgagttacgtaggtaacaagttgtgttcatagcctcgtgttttttccaacgtatgtgat |
37385623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 109
Target Start/End: Original strand, 37362222 - 37362269
Alignment:
| Q |
62 |
gttcatggatgttcactatttgttctacattgcaagtagtttggcttc |
109 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
37362222 |
gttcatggatgtgcactatttgttctaaattgcaagtagtttggcttc |
37362269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 109
Target Start/End: Complemental strand, 37365839 - 37365792
Alignment:
| Q |
62 |
gttcatggatgttcactatttgttctacattgcaagtagtttggcttc |
109 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
37365839 |
gttcatggatgtgcactatttgttctaaattgcaagtagtttggcttc |
37365792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 41227512 - 41227435
Alignment:
| Q |
19 |
gaacgtcgcaacaacgcaagggacgatattcatggatttggaagttcatggatgttcactatttgttctacattgcaa |
96 |
Q |
| |
|
|||||| | ||||||||||||||| |||| ||||| |||||||||||||||| | ||| |||||||| ||||||| |
|
|
| T |
41227512 |
gaacgttgtaacaacgcaagggacaatatcaatggacgtggaagttcatggatgcgcgctagttgttctatattgcaa |
41227435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University