View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18627_low_14 (Length: 282)
Name: NF18627_low_14
Description: NF18627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18627_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 16 - 271
Target Start/End: Original strand, 2300355 - 2300610
Alignment:
| Q |
16 |
cagttatgactttgaacatacctttaacgaaaatacagaaaagataccaaaccaagatcatggatgcaaaagacaacagaatgaagaccacttcagaaat |
115 |
Q |
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| T |
2300355 |
cagttatgactttgaacatacctttaacgaaaatacagaaaagataccaaaccaagatcatggatgcaaaagacaacagaatgaagaccacttcagaaat |
2300454 |
T |
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| Q |
116 |
tctcaaaaacatgaggactttgaaacttcaagcatgggatggtgagtttttccaaaggatagaagcattgagaagagttgaatatggttggttatcaaag |
215 |
Q |
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| T |
2300455 |
tctcaaaaacatgaggactttgaaatttcaagcatgggattgtgagtttttccaaaggatagaatcattgagaagtgttgaatatggttggttatcaaag |
2300554 |
T |
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| Q |
216 |
tcattaagacaacaggcgttttcggcttttatcttctggggttcacctacattcat |
271 |
Q |
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| T |
2300555 |
tcattaagacaacaggctttttcggcttttatcttctggggttcacctacattcat |
2300610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 16 - 271
Target Start/End: Original strand, 2324574 - 2324829
Alignment:
| Q |
16 |
cagttatgactttgaacatacctttaacgaaaatacagaaaagataccaaaccaagatcatggatgcaaaagacaacagaatgaagaccacttcagaaat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2324574 |
cagttatgactttgaacatacctttaacgaaaatacagaaaagataccaaaccaagatcatggatgcaaaagacaacagaatgaagaccacttcagaaat |
2324673 |
T |
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| Q |
116 |
tctcaaaaacatgaggactttgaaacttcaagcatgggatggtgagtttttccaaaggatagaagcattgagaagagttgaatatggttggttatcaaag |
215 |
Q |
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||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
2324674 |
tctcaaaaacatgaggactttgaaatttcaagcatgggattgtgagtttttccaaaggatagaatcattgagaagtgttgaatatggttggttatcaaag |
2324773 |
T |
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| Q |
216 |
tcattaagacaacaggcgttttcggcttttatcttctggggttcacctacattcat |
271 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2324774 |
tcattaagacaacaggctttttcggcttttatcttctggggttcacctacattcat |
2324829 |
T |
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