View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18627_low_17 (Length: 248)
Name: NF18627_low_17
Description: NF18627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18627_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 31539734 - 31539960
Alignment:
| Q |
1 |
ctgattagttattataggagcaccaaaatataatataaaaataagacannnnnnnnatattat-ttatatttataatggaaggaatcttataatgcacta |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||| |
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| T |
31539734 |
ctgattagttattataggagcaccaaaatataatataaaaataagacattt------ttttatattatatttataatggaaggaatcttataatgcacta |
31539827 |
T |
|
| Q |
100 |
gtatttttcattcctaaaattcattataatgcaatttgtacaaacattacgtttttcttgactgatatttgattctagtgcagatattgttgttgcttcc |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
31539828 |
gtatttttcattcctaaaattcattataatgcaatttgtacaaacattacgtttttcttgactcatgtttgattctagtgcagatattgttgttgcttcc |
31539927 |
T |
|
| Q |
200 |
ttacataaaaggcttaaatcaaggtgtttgagt |
232 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
31539928 |
ttacataaaaggcttaaatcaaggtgtttgagt |
31539960 |
T |
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