View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18627_low_4 (Length: 621)
Name: NF18627_low_4
Description: NF18627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18627_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 9 - 520
Target Start/End: Complemental strand, 38041124 - 38040613
Alignment:
| Q |
9 |
aacagagagcagcatgttataaaagacatgataatggnnnnnnnnncaaagcaaaagagattaatattaannnnnnn-cagaggagattaatactattaa |
107 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
38041124 |
aacagacaacagcatgttataaaagacatgataatggtttttttt-caaagcaaaagagattaatattaattttttttcataggagattaatactattaa |
38041026 |
T |
|
| Q |
108 |
aactttgtttgagcaataatactattaaaacttaacaagtacaagaagtataagagtttacaacaatataaacatgaactacaaccaaatgctagctaat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38041025 |
aactttgtttgagcaataatactattaaaacttaacaagtacaagaagtataagagtttacaacaatataaacatgaactacaaccaaatgctagctaat |
38040926 |
T |
|
| Q |
208 |
taaaacacagaccaacaaagaaagtttatcaagaatcgggtgttgattttgatgaactccctctctcacgagctcctcgtagttcataaggagaacttcg |
307 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38040925 |
taaaacacagaccaacagagaaagtttatcaagaatcgggtgttgattttgatgaactccctctctcacgagctcctcgtagttcataaggagaacttcg |
38040826 |
T |
|
| Q |
308 |
tcttctgcaacgtaaagttcttccattgacaagacaagattctctcagagattgctcttccttaatctttctttgattcttgaagactgcaacaagttta |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| | ||||||||||||||||||||||||||| |
|
|
| T |
38040825 |
tcttctgcaacgtaaagttcttccattgacaagacaagattctctcagagattcctcttccttaatttttttctgattcttgaagactgcaacaagttta |
38040726 |
T |
|
| Q |
408 |
attgattagaaaacaaattttgataagaaaaaatttaactagagatcaaagttattttaaggcgtaaaaatgaaatttgttactactaaatgaaataacg |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
38040725 |
attgattagaaaacaaattttgataagaaaaaatttaactagcgatcaaagttatttaaaggcgtaaaaatgaaatttgatactactaaatgaaataacg |
38040626 |
T |
|
| Q |
508 |
aaattaaaataag |
520 |
Q |
| |
|
||||||||||||| |
|
|
| T |
38040625 |
aaattaaaataag |
38040613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 156; Significance: 1e-82; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 236 - 510
Target Start/End: Complemental strand, 31837244 - 31836967
Alignment:
| Q |
236 |
tcaagaatcgggtgttgattttgatgaactccctctctcacgagctcctcgtagttcataaggagaacttcgtcttctgcaacgtaaagttcttccattg |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||| |||| |||| ||||||||| |
|
|
| T |
31837244 |
tcaagaatcgggtgttgattttgatgaactccctctctcacgagcttttcataattcataaggagaacttcgtcttctgcgacgtgaagtgcttccattg |
31837145 |
T |
|
| Q |
336 |
acaagacaagattctctcagagattgctcttccttaatctttctttgattcttga---agactgcaacaagtttaattgattagaaaacaaattttgata |
432 |
Q |
| |
|
||| |||||| ||||||||| |||||||||||||||| ||||| ||||||||| | |||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
31837144 |
ccaacacaagactctctcagaaattgctcttccttaatttttctctgattcttgtgataaactgcaacaagtttcgttgattagaaaacaaattttaata |
31837045 |
T |
|
| Q |
433 |
agaaaaaatttaactagagatcaaagttattttaaggcgtaaaaatgaaatttgttactactaaatgaaataacgaaa |
510 |
Q |
| |
|
| ||||||| ||||||| ||||||||||||| | || |||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
31837044 |
aaaaaaaatataactagccatcaaagttatttaatggtgtaaaaatgaaatttgttactactaaataaagtaacgaaa |
31836967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 236 - 510
Target Start/End: Complemental strand, 31841281 - 31840996
Alignment:
| Q |
236 |
tcaagaatcgggtgttgattttgatgaactccctctctcacgagctcctcgtagttcataaggagaacttcgtcttctgcaacgtaaagttcttccattg |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||| |||| |||| ||||||||| |
|
|
| T |
31841281 |
tcaagaatcgggtgttgattttgatgaactccctctctcacgagcttttcataattcataaggagaacttcgtcttctgcgacgtgaagtgcttccattg |
31841182 |
T |
|
| Q |
336 |
acaagacaagattctctcagagattgctcttccttaatctttctttgattctt--------------gaagactgcaacaagtttaattgattagaaaac |
421 |
Q |
| |
|
|| |||||| ||| ||||| ||||||||||||| || | | |||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
31841181 |
ac---acaagactctatcagaaattgctcttccttgattgctttctgattcttgtgataattgaagagaagactgcaacaagtttcgttgattagaaaac |
31841085 |
T |
|
| Q |
422 |
aaattttgataagaaaaaatttaactagagatcaaagttattttaaggcgtaaaaatgaaatttgttactactaaatgaaataacgaaa |
510 |
Q |
| |
|
|||| || |||||||||||| ||||||| |||||||||||||| | ||||||||||| ||||||||||||||||||| || |||||||| |
|
|
| T |
31841084 |
aaatcttaataagaaaaaatataactagcgatcaaagttatttaatggcgtaaaaataaaatttgttactactaaataaagtaacgaaa |
31840996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 31841533 - 31841309
Alignment:
| Q |
19 |
agcatgttataaaagacatgataatggnnnnnnnnn-caaagcaaaagagattaatattaannnnnnncagaggagattaatactattaaaactttgttt |
117 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
31841533 |
agcatgttataaaagacatgataatggttttttttttcaaagcaaaagagattaatattaagttttttcagaggagattaatattattaaaactttgttt |
31841434 |
T |
|
| Q |
118 |
gagcaataatactattaaaacttaacaagtacaagaagt---ataagagtttacaacaatataaacatgaactacaaccaaatgctagc-taattaaaac |
213 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
31841433 |
gagcaaaaatactattaaaacttaacaagtacaagaagtggaagaagaatttacaacaatataaacatgagctacaaccaaatgctagcttaattaaaac |
31841334 |
T |
|
| Q |
214 |
acagaccaacaaagaaagtttatca |
238 |
Q |
| |
|
||| | ||||| ||||||||||||| |
|
|
| T |
31841333 |
acaaagcaacagagaaagtttatca |
31841309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 61 - 238
Target Start/End: Complemental strand, 31837457 - 31837276
Alignment:
| Q |
61 |
aaaagagattaatattaannnnnnncagaggagattaatactattaaaactttgtttgagcaataatactattaaaacttaacaagtacaagaagt---a |
157 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
31837457 |
aaaagagattaatattaatttttttcagaggagattaatactattacaactttgtttgagcaaaaatactattaaaacttaacaagtacaagaagtggaa |
31837358 |
T |
|
| Q |
158 |
taagagtttacaacaatataaacatgaactacaaccaaatgctagc-taattaaaacacagaccaacaaagaaagtttatca |
238 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||| | ||||| ||||||||||||| |
|
|
| T |
31837357 |
gaagaatttacaacaatataaacatgagctacaaccaaatgctagcttaattaaaacacaaagcaacagagaaagtttatca |
31837276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University