View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18628_high_1 (Length: 699)
Name: NF18628_high_1
Description: NF18628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18628_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 563; Significance: 0; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 6 - 681
Target Start/End: Complemental strand, 7101055 - 7100378
Alignment:
| Q |
6 |
atatacaaagtggtccaattggtgggaaaatttatggaagcaatagtagtcaaatatggctgtttgacatgaattaattatatcatcttatcttatgtat |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7101055 |
atatacaaagtggtccaattggtgggaaaatttatggaagcaatagtagtcaaatatagctgtttgacatgaattaactatatcatcttatcttatgtag |
7100956 |
T |
|
| Q |
106 |
agtagagagacaaaggaagaaccacaatgcacaataataatcttgtattttttgtttatctcttgtttatcagtttgacatcggaatttcaatgttctgt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||| |
|
|
| T |
7100955 |
agtagagagacaaaggaagaaccacaatgcacaataataatcttgtattttttgtttatctcttgtgtatctgtttgacatcggaatttcaatgttttgt |
7100856 |
T |
|
| Q |
206 |
tcctcaaagtga--caagcatgatgtttttgttagctttagaggtctagatatccgtgaaggttttcttagccatttggttgaagctctatctcgaaaga |
303 |
Q |
| |
|
||||||| |||| |||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7100855 |
tcctcaacgtgagacaagtatgatgtctttgttagctttagaggtctagatatccttgaaggttttcttagccatttggttgaagctttatctcgaaaga |
7100756 |
T |
|
| Q |
304 |
aaattgttttctttgtagacaataagcttagaaaaggtgatgaaatagcagaatcacttcttgaagctattgaaacatccttgatttctttggtcatatt |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
7100755 |
aaattgttttctttgtagacaataagcttagaaaaggtgatgaaatagcacaatcacttcttgaaactattgaaacatcgttgatttctttggtcatatt |
7100656 |
T |
|
| Q |
404 |
ctctcaaaactatgcttcttcatcttggtgtttggatgaacttgtcaaaattgttgagtgtagagagaaagatggacagattttattgcctgttttctac |
503 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||| | |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7100655 |
ctctcaaaactatgcttcttcgtcgtggtgtttggatgagttagtcaaaattgttgagtgtagggagaaagatggacatattttattgcctgttttctac |
7100556 |
T |
|
| Q |
504 |
aaagttgatcctacaattgtgaggcatcagaagggaacttatgcagatgaatttgtcgaacatgacaaaaagtacaattcaattagggtgaaacagtgga |
603 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7100555 |
aaagttgatcctacaattgtgaggcatcagaagggaacttatgcaaatgaatttgttgaacatgacaaaaagtacaattcaagtagggtgaaacagtgga |
7100456 |
T |
|
| Q |
604 |
gatctgctttgaagaaatctgcagatatctcaggctttcattcatcacaatttttgtaagttttgttttactctattt |
681 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7100455 |
gatctgctttgaagaaatctgcagatatctctggttttcattcatcacaatttttgtaagttttgttttactctattt |
7100378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 184 - 667
Target Start/End: Complemental strand, 7087263 - 7086780
Alignment:
| Q |
184 |
catcggaatttcaatgttctgttcctcaaagtgacaagcatgatgtttttgttagctttagaggtctagatatccgtgaaggttttcttagccatttggt |
283 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||| |||||||| |
|
|
| T |
7087263 |
catcggaatttcaatgttcagttcctcaaagtgacaagcatgatgtctttgttagctttagaggtctggacatccgtgaaggttttcttagtcatttggt |
7087164 |
T |
|
| Q |
284 |
tgaagctctatctcgaaagaaaattgttttctttgtagacaataagcttagaaaaggtgatgaaatagcagaatcacttcttgaagctattgaaacatcc |
383 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
7087163 |
tgaagctttatctcgaaaggaaattgttttctttgtagacaataagcttagaaaaggtgatgaaatagcacaatcactttttgaagctattgaaacatct |
7087064 |
T |
|
| Q |
384 |
ttgatttctttggtcatattctctcaaaactatgcttcttcatcttggtgtttggatgaacttgtcaaaattgttgagtgtagagagaaagatggacaga |
483 |
Q |
| |
|
| ||||| || |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7087063 |
tcaatttcattagtcatattctctcaaaactatgcttcttcaaaatggtgtttggatgagcttgtcaaaattgttgagtgtagagagaaagatggacaga |
7086964 |
T |
|
| Q |
484 |
ttttattgcctgttttctacaaagttgatcctacaattgtgaggcatcagaagggaacttatgcagatgaatttgtcgaacatgacaaaaagtacaattc |
583 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| ||||||||| ||| ||||| |||||||| |||||||||||| |
|
|
| T |
7086963 |
ttttattgcctgttttttacaaagttgaccctacagttgtgaggcatcagaaggggacttatgcaaatgcatttgcagaacatgaacaaaagtacaattt |
7086864 |
T |
|
| Q |
584 |
aattagggtgaaacagtggagatctgctttgaagaaatctgcagatatctcaggctttcattcatcacaatttttgtaagtttt |
667 |
Q |
| |
|
| | |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
7086863 |
gaacaaggtgaaacagtggagaagctctttgaagaaatctgcagatatctcagggtttcattcatcacaatttttgtaagtttt |
7086780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 192 - 582
Target Start/End: Complemental strand, 7070189 - 7069799
Alignment:
| Q |
192 |
tttcaatgttctgttcctcaaagtgacaagcatgatgtttttgttagctttagaggtctagatatccgtgaaggttttcttagccatttggttgaagctc |
291 |
Q |
| |
|
||||||| |||||||||||||| | ||||| ||||||| |||||||||||| | |||| |||||||||||||| ||||||| |||||| || ||||| |
|
|
| T |
7070189 |
tttcaatcttctgttcctcaaattcacaagtatgatgtctttgttagctttcggggtccagatatccgtgaagtttttcttcctcatttgattaaagctt |
7070090 |
T |
|
| Q |
292 |
tatctcgaaagaaaattgttttctttgtagacaataagcttagaaaaggtgatgaaatagcagaatcacttcttgaagctattgaaacatccttgatttc |
391 |
Q |
| |
|
| |||| |||||||||||||| |||||||||| ||||||||| |||||| |||||||| || | |||||| ||||||| ||||||||||| | ||||| |
|
|
| T |
7070089 |
tttctcaaaagaaaattgtttactttgtagactataagcttacaaaaggaaatgaaatatcacagtcactttttgaagcaattgaaacatcttcaatttc |
7069990 |
T |
|
| Q |
392 |
tttggtcatattctctcaaaactatgcttcttcatcttggtgtttggatgaacttgtcaaaattgttgagtgtagagagaaagatggacagattttattg |
491 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||| |||||||||||||||||| | ||||||||| |
|
|
| T |
7069989 |
attagtcatattctctcaaaactatgcttcttcatcttggtgtttggatgagctggtcaaagttgttgactgtagagagaaagatggaaacattttattg |
7069890 |
T |
|
| Q |
492 |
cctgttttctacaaagttgatcctacaattgtgaggcatcagaagggaacttatgcagatgaatttgtcgaacatgacaaaaagtacaatt |
582 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||| |||||| |||||||| |||||||||||| |
|
|
| T |
7069889 |
cctgttttctacaaagttgatcccacaattgtgaggcatcaaaatggaacttatgcagatgcatttgttgaacatgaacaaaagtacaatt |
7069799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 106 - 175
Target Start/End: Complemental strand, 7087389 - 7087320
Alignment:
| Q |
106 |
agtagagagacaaaggaagaaccacaatgcacaataataatcttgtattttttgtttatctcttgtttat |
175 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
7087389 |
agtagagacacaaaggaagatccacaatgcacaatattaatcttgtattttttgtttgtctcttgtttat |
7087320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 372 - 508
Target Start/End: Complemental strand, 7078533 - 7078397
Alignment:
| Q |
372 |
attgaaacatccttgatttctttggtcatattctctcaaaactatgcttcttcatcttggtgtttggatgaacttgtcaaaattgttgagtgtagagaga |
471 |
Q |
| |
|
||||||| ||| || ||||| ||||| |||||||||| ||||| ||| ||||||| ||||||| |||| || ||||| ||||| |||||||||||||| | |
|
|
| T |
7078533 |
attgaaaaatcattcatttcattggttatattctctccaaactttgcatcttcatattggtgtatggaggagcttgtgaaaatagttgagtgtagagaaa |
7078434 |
T |
|
| Q |
472 |
aagatggacagattttattgcctgttttctacaaagt |
508 |
Q |
| |
|
|| |||| |||| || |||| ||||||||| |||| |
|
|
| T |
7078433 |
aatatggtaggattctaatgccagttttctaccaagt |
7078397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 599 - 674
Target Start/End: Complemental strand, 7078306 - 7078231
Alignment:
| Q |
599 |
gtggagatctgctttgaagaaatctgcagatatctcaggctttcattcatcacaatttttgtaagttttgttttac |
674 |
Q |
| |
|
||||||||||||||||||| |||||||| |||| || || ||| ||||||||||||||| |||||| || |||||| |
|
|
| T |
7078306 |
gtggagatctgctttgaagcaatctgcaaatatttctggatttgattcatcacaattttcgtaagtgttcttttac |
7078231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 365 - 518
Target Start/End: Original strand, 7021085 - 7021238
Alignment:
| Q |
365 |
tgaagctattgaaacatccttgatttctttggtcatattctctcaaaactatgcttcttcatcttggtgtttggatgaacttgtcaaaattgttgagtgt |
464 |
Q |
| |
|
|||||| ||||||| ||| || ||| ||||||||||||||||| ||||| | | | |||| ||||||||||||||| ||||| ||||| ||||| || |
|
|
| T |
7021085 |
tgaagcaattgaaaaatcattcattcatttggtcatattctctccaaacttttcatattcacattggtgtttggatgagcttgtgaaaatagttgattgc |
7021184 |
T |
|
| Q |
465 |
agagagaaagatggacagattttattgcctgttttctacaaagttgatcctaca |
518 |
Q |
| |
|
|||| ||| ||| |||| ||||||| ||||||||| |||| ||||||||| |
|
|
| T |
7021185 |
agagcaaaatatgataggattctattgccagttttctaccaagtagatcctaca |
7021238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 372 - 468
Target Start/End: Original strand, 7028695 - 7028791
Alignment:
| Q |
372 |
attgaaacatccttgatttctttggtcatattctctcaaaactatgcttcttcatcttggtgtttggatgaacttgtcaaaattgttgagtgtagag |
468 |
Q |
| |
|
||||||| ||| |||||||| ||||||||||| |||| ||||| ||| |||||| |||||||||||| || ||||| ||||| || ||||| |||| |
|
|
| T |
7028695 |
attgaaaaatcattgatttcattggtcatattttctccaaactttgcatcttcacattggtgtttggacgagcttgtgaaaatagtcgagtgcagag |
7028791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 372 - 468
Target Start/End: Original strand, 7035397 - 7035493
Alignment:
| Q |
372 |
attgaaacatccttgatttctttggtcatattctctcaaaactatgcttcttcatcttggtgtttggatgaacttgtcaaaattgttgagtgtagag |
468 |
Q |
| |
|
||||||| ||| |||||||| ||||||||||| || | ||||| ||| |||||| ||||||||||||||| ||||| ||||| || ||||| |||| |
|
|
| T |
7035397 |
attgaaaaatcattgatttcattggtcatattttcaccaaactttgcatcttcacattggtgtttggatgagcttgtgaaaatagtcgagtgcagag |
7035493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 95 - 176
Target Start/End: Complemental strand, 7070331 - 7070253
Alignment:
| Q |
95 |
atcttatgtatagtagagagacaaaggaagaaccacaatgcacaataataatcttgtattttttgtttatctcttgtttatc |
176 |
Q |
| |
|
|||||||||| |||||||||||||||||| | ||||||||||| | ||||| || ||||||||||| ||| ||||||||| |
|
|
| T |
7070331 |
atcttatgtagagtagagagacaaaggaaaatccacaatgcac---attaatcgtgcattttttgtttgtcttttgtttatc |
7070253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 8e-23; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 364 - 503
Target Start/End: Original strand, 3953034 - 3953173
Alignment:
| Q |
364 |
ttgaagctattgaaacatccttgatttctttggtcatattctctcaaaactatgcttcttcatcttggtgtttggatgaacttgtcaaaattgttgagtg |
463 |
Q |
| |
|
||||||| |||||| ||| || ||||| ||| |||||||||| ||||||||||||||||| ||||||||| || |||||||| ||||| ||||||| |
|
|
| T |
3953034 |
ttgaagcaattgaaggatcgttcatttcattgatcatattctcagaaaactatgcttcttcacgttggtgtttagaagaacttgtgaaaataattgagtg |
3953133 |
T |
|
| Q |
464 |
tagagagaaagatggacagattttattgcctgttttctac |
503 |
Q |
| |
|
||||||||| ||||||||||| || | |||||||||||| |
|
|
| T |
3953134 |
cagagagaaaaatggacagattgtaatacctgttttctac |
3953173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 387 - 519
Target Start/End: Complemental strand, 4220850 - 4220718
Alignment:
| Q |
387 |
atttctttggtcatattctctcaaaactatgcttcttcatcttggtgtttggatgaacttgtcaaaattgttgagtgtagagagaaagatggacagattt |
486 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||||||| ||||||||| || |||||||| ||||| ||||||| ||||||||| ||||||| || |
|
|
| T |
4220850 |
atttcattggtcatattctctgaaaactatgcttcttcacattggtgtttagaagaacttgtaaaaataattgagtgcagagagaaatatggacaacttg |
4220751 |
T |
|
| Q |
487 |
tattgcctgttttctacaaagttgatcctacaa |
519 |
Q |
| |
|
|| | ||| |||||||| | || |||||||||| |
|
|
| T |
4220750 |
taatacctattttctacgaggtagatcctacaa |
4220718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 387 - 503
Target Start/End: Complemental strand, 3821612 - 3821496
Alignment:
| Q |
387 |
atttctttggtcatattctctcaaaactatgcttcttcatcttggtgtttggatgaacttgtcaaaattgttgagtgtagagagaaagatggacagattt |
486 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||| ||||||||| ||||| ||||| ||||| | ||||| | ||||||| ||||||||||| |
|
|
| T |
3821612 |
atttcattggtcatattctcaaaaaactatgcttcttcacattggtgtttagatgagcttgtgaaaataatcgagtgcaaagagaaatatggacagattg |
3821513 |
T |
|
| Q |
487 |
tattgcctgttttctac |
503 |
Q |
| |
|
|||| ||| |||||||| |
|
|
| T |
3821512 |
tattacctattttctac |
3821496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 366 - 502
Target Start/End: Complemental strand, 4003369 - 4003233
Alignment:
| Q |
366 |
gaagctattgaaacatccttgatttctttggtcatattctctcaaaactatgcttcttcatcttggtgtttggatgaacttgtcaaaattgttgagtgta |
465 |
Q |
| |
|
||||| |||||| ||| || ||||| |||||||||||||| ||||||||||||||||| ||||||||| || |||||||| ||||| ||||||| | |
|
|
| T |
4003369 |
gaagcaattgaaggatcattcatttcattggtcatattctcagaaaactatgcttcttcacattggtgtttagaagaacttgtgaaaataattgagtgca |
4003270 |
T |
|
| Q |
466 |
gagagaaagatggacagattttattgcctgttttcta |
502 |
Q |
| |
|
||||||| |||||| |||| | || ||||||||||| |
|
|
| T |
4003269 |
aagagaaatatggacggattgttttacctgttttcta |
4003233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 387 - 502
Target Start/End: Complemental strand, 4011827 - 4011712
Alignment:
| Q |
387 |
atttctttggtcatattctctcaaaactatgcttcttcatcttggtgtttggatgaacttgtcaaaattgttgagtgtagagagaaagatggacagattt |
486 |
Q |
| |
|
||||| |||||||||||||| |||||||||||| |||| ||||||||| || ||||||| ||||| ||||||| | ||||||| ||||||||||| |
|
|
| T |
4011827 |
atttcattggtcatattctcataaaactatgcttgttcacattggtgtttagaagaacttgcgaaaataattgagtgcaaagagaaatatggacagattg |
4011728 |
T |
|
| Q |
487 |
tattgcctgttttcta |
502 |
Q |
| |
|
|| | ||||||||||| |
|
|
| T |
4011727 |
taatacctgttttcta |
4011712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 342 - 518
Target Start/End: Original strand, 3915970 - 3916146
Alignment:
| Q |
342 |
gatgaaatagcagaatcacttcttgaagctattgaaacatccttgatttctttggtcatattctctcaaaactatgcttcttcatcttggtgtttggatg |
441 |
Q |
| |
|
||||| ||| |||| |||||| |||||| || ||| ||| || ||||| ||| |||||||||| |||||||||||| |||| ||||||||| | | |
|
|
| T |
3915970 |
gatgacatatcagattcacttggtgaagcaatcgaaggatcattcatttcattgatcatattctcagaaaactatgcttgttcacattggtgtttaaaag |
3916069 |
T |
|
| Q |
442 |
aacttgtcaaaattgttgagtgtagagagaaagatggacagattttattgcctgttttctacaaagttgatcctaca |
518 |
Q |
| |
|
||||||| ||||| |||||||||| ||||||| ||| ||| ||| || | |||||||||| || || ||||||||| |
|
|
| T |
3916070 |
aacttgtgaaaatagttgagtgtaaagagaaatatgcacaaattgtaatacctgttttcttcagggtagatcctaca |
3916146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 387 - 518
Target Start/End: Complemental strand, 3812039 - 3811908
Alignment:
| Q |
387 |
atttctttggtcatattctctcaaaactatgcttcttcatcttggtgtttggatgaacttgtcaaaattgttgagtgtagagagaaagatggacagattt |
486 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||| ||||||||| ||||| ||||| ||||| ||||||| | ||||| | ||||||| || |
|
|
| T |
3812039 |
atttcattggtcatattctcagaaaactatgcttcttcacattggtgtttagatgagcttgtgaaaataattgagtgcaaagagacatatggacattttg |
3811940 |
T |
|
| Q |
487 |
tattgcctgttttctacaaagttgatcctaca |
518 |
Q |
| |
|
|| | ||| |||||||| ||| ||||||||| |
|
|
| T |
3811939 |
taatacctattttctacggagtagatcctaca |
3811908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 387 - 502
Target Start/End: Complemental strand, 4026584 - 4026469
Alignment:
| Q |
387 |
atttctttggtcatattctctcaaaactatgcttcttcatcttggtgtttggatgaacttgtcaaaattgttgagtgtagagagaaagatggacagattt |
486 |
Q |
| |
|
||||| ||| |||||||||| ||||||||||||||||| ||||||||| || |||||| | ||||| |||| || | ||||||| ||||||||||| |
|
|
| T |
4026584 |
atttcattgatcatattctcagaaaactatgcttcttcaagttggtgtttagaagaacttttgaaaataattgattgcaaagagaaatatggacagattg |
4026485 |
T |
|
| Q |
487 |
tattgcctgttttcta |
502 |
Q |
| |
|
|| | ||||||||||| |
|
|
| T |
4026484 |
taatacctgttttcta |
4026469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 387 - 481
Target Start/End: Complemental strand, 4019624 - 4019530
Alignment:
| Q |
387 |
atttctttggtcatattctctcaaaactatgcttcttcatcttggtgtttggatgaacttgtcaaaattgttgagtgtagagagaaagatggaca |
481 |
Q |
| |
|
||||| ||| |||||||||| ||| |||||||||||||| ||||||||||| |||||||||| ||| || | || ||||||||| ||||||| |
|
|
| T |
4019624 |
atttccttgatcatattctcacaagactatgcttcttcacgctggtgtttggaagaacttgtcacaatacttcaatgcagagagaaatatggaca |
4019530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 357 - 454
Target Start/End: Complemental strand, 3988267 - 3988170
Alignment:
| Q |
357 |
tcacttcttgaagctattgaaacatccttgatttctttggtcatattctctcaaaactatgcttcttcatcttggtgtttggatgaacttgtcaaaat |
454 |
Q |
| |
|
|||||| ||||||| |||||| || || ||||| |||||||||||||| |||| ||| |||||||| ||||||||| ||||||||||| ||||| |
|
|
| T |
3988267 |
tcacttgttgaagcaattgaaggctcgttaatttcattggtcatattctcaaaaaattattcttcttcacattggtgtttagatgaacttgtgaaaat |
3988170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 413 - 485
Target Start/End: Complemental strand, 3805874 - 3805802
Alignment:
| Q |
413 |
ctatgcttcttcatcttggtgtttggatgaacttgtcaaaattgttgagtgtagagagaaagatggacagatt |
485 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||| ||| || | || ||| ||||| ||||||||||| |
|
|
| T |
3805874 |
ctatgcttcttcatgttggtgtttggacgaacttgtcacaatacttcaatgcagaaagaaatatggacagatt |
3805802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 387 - 450
Target Start/End: Complemental strand, 3825867 - 3825804
Alignment:
| Q |
387 |
atttctttggtcatattctctcaaaactatgcttcttcatcttggtgtttggatgaacttgtca |
450 |
Q |
| |
|
||||| ||| |||||||||| ||| ||||||||||||||| ||||||||| || |||| ||||| |
|
|
| T |
3825867 |
atttccttgatcatattctcacaagactatgcttcttcatgttggtgtttagaagaacatgtca |
3825804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 357 - 503
Target Start/End: Complemental strand, 13399219 - 13399073
Alignment:
| Q |
357 |
tcacttcttgaagctattgaaacatccttgatttctttggtcatattctctcaaaactatgcttcttcatcttggtgtttggatgaacttgtcaaaattg |
456 |
Q |
| |
|
|||||| ||||||| || ||| ||| || ||||| ||| |||||||||| ||||||||||||||||| ||||||||| || |||||||| ||||| |
|
|
| T |
13399219 |
tcactttttgaagcaatcgaaggatcatttatttcattgatcatattctcagaaaactatgcttcttcacgttggtgtttagaagaacttgtgaaaataa |
13399120 |
T |
|
| Q |
457 |
ttgagtgtagagagaaagatggacagattttattgcctgttttctac |
503 |
Q |
| |
|
||||||| | ||||||| ||||||| ||| || | |||||||||||| |
|
|
| T |
13399119 |
ttgagtgcaaagagaaatatggacaaattgtaatacctgttttctac |
13399073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 437
Target Start/End: Complemental strand, 12782211 - 12782174
Alignment:
| Q |
400 |
tattctctcaaaactatgcttcttcatcttggtgtttg |
437 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
12782211 |
tattctctaaaaactatgcttcttcaacttggtgtttg |
12782174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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