View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18628_high_8 (Length: 280)
Name: NF18628_high_8
Description: NF18628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18628_high_8 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 26 - 162
Target Start/End: Original strand, 13485313 - 13485449
Alignment:
| Q |
26 |
ggacattcacatggatcctcttcccaccaacttttcttctactagagaacatgatgtctaggacatcatcctcaacatttgactcagtatctcaagaggg |
125 |
Q |
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| T |
13485313 |
ggacattcacatggatcctcttccgaacaacttttcttctactagagaacatgatgtctaggacatcatcctcaacatttgactcagtatctcaagaggg |
13485412 |
T |
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| Q |
126 |
aacctgcttccgtggggattctagaggactcatgagg |
162 |
Q |
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| T |
13485413 |
aacctgcttccttggggattctagaggactcatgagg |
13485449 |
T |
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Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 194 - 280
Target Start/End: Original strand, 13485479 - 13485565
Alignment:
| Q |
194 |
cgttgagcctcagagcaacattactaggccggcaaccttcaatagtattcacaatcttagtactcacaccttgattagcctctgtat |
280 |
Q |
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| T |
13485479 |
cgttgatcctcggagcaacattactaggcaggcaaccttccatagtattcacaatcttagtactcacaccttgattagcctctgtat |
13485565 |
T |
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Target: scaffold0005 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 168645 - 168559
Alignment:
| Q |
26 |
ggacattcacatggatcctcttcccaccaacttttcttctactagagaacatgatgtctaggacatcatcctcaacatttgactcag |
112 |
Q |
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| T |
168645 |
ggacattcaaagagatcctcttccaaccaacttttcttctactagaggacacgatgtccaggacatcatcctcaacatctggctcag |
168559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 26 - 112
Target Start/End: Original strand, 14648647 - 14648733
Alignment:
| Q |
26 |
ggacattcacatggatcctcttcccaccaacttttcttctactagagaacatgatgtctaggacatcatcctcaacatttgactcag |
112 |
Q |
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| T |
14648647 |
ggacattcaaagagatcctcttccaaccaacttttcttctactagaggacacgatgtccaggacatcatcctcaacatctggctcag |
14648733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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