View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18628_high_9 (Length: 250)
Name: NF18628_high_9
Description: NF18628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18628_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 135 - 230
Target Start/End: Original strand, 35905683 - 35905776
Alignment:
| Q |
135 |
gcttatcttttgatcgttcttaatccaacactaaaaatgggagattgagaaaatcaaatcgcagagttagttactcatctctcctattggaataaa |
230 |
Q |
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| T |
35905683 |
gcttatcttttgatcgttct-aatccaacactaaaaatgggagattgagaaaatcaaatcgcagagttagttactcat-tctcctattggaataaa |
35905776 |
T |
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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 35904617 - 35904655
Alignment:
| Q |
1 |
ctaactcgtatatataatgtattgtctctattaaccgag |
39 |
Q |
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| T |
35904617 |
ctaactcgtatatataatgcattgtctctattaaccgag |
35904655 |
T |
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