View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18628_low_12 (Length: 249)

Name: NF18628_low_12
Description: NF18628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18628_low_12
NF18628_low_12
[»] chr1 (1 HSPs)
chr1 (1-247)||(47290268-47290514)
[»] chr8 (1 HSPs)
chr8 (16-157)||(39175797-39175938)
[»] chr2 (1 HSPs)
chr2 (199-238)||(195269-195308)
[»] chr6 (1 HSPs)
chr6 (199-238)||(22894158-22894197)
[»] chr7 (1 HSPs)
chr7 (205-238)||(19534678-19534711)


Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 47290268 - 47290514
Alignment:
Q  1 tatctagttcaattttggagttcacttaagagctcaattgttcaaaccattctataattgctacagttacagtgagatctgattctgaattttggtgttc 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||| |    
T  47290268 tatctatttcaattttggagttcacttaagagctcaattgttcaaaccattctgcaattgctacagttacagtgagatctgatgctgaattttggtgtcc 47290367  T
Q  101 ccctccaccaggtgtgatgaatctgaatttgaatgtggatggaggatgctttaaggaatttgaatttgaatctagagaccatagagaagtcctagaatta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  47290368 ccctccaccaggtgtgatgaatctgaatttgaatgtggatggaggatgctttaaggaatctgaatttgaatctagagaccatagaggagtcctagaatta 47290467  T
Q  201 tccaaggtcttatttggatggttgagatataaaatattcttcgagat 247  Q
    |||||||||||||||||||||||||||| ||||||||| ||| ||||    
T  47290468 tccaaggtcttatttggatggttgagatgtaaaatattattctagat 47290514  T

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Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 39175797 - 39175938
Alignment:
Q  16 tggagttcacttaagagctcaattgttcaaaccattctataattgctacagttacagtgagatctgattctgaattttggtgttcccctccaccaggtgt 115  Q
    |||||||||||| ||||||||||||| ||||||||||  |||||||||| |||  ||||||| ||||| |||||||||||||| ||||||||||||||||    
T  39175797 tggagttcacttcagagctcaattgtgcaaaccattccgtaattgctactgttttagtgagaactgatgctgaattttggtgtccccctccaccaggtgt 39175896  T
Q  116 gatgaatctgaatttgaatgtggatggaggatgctttaagga 157  Q
    ||||| ||| |||||||||||||||||||||||| |||||||    
T  39175897 gatgattctaaatttgaatgtggatggaggatgcattaagga 39175938  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 238
Target Start/End: Original strand, 195269 - 195308
Alignment:
Q  199 tatccaaggtcttatttggatggttgagatataaaatatt 238  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  195269 tatccaaggtctgatttggatggttgagatataaaatatt 195308  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 238
Target Start/End: Original strand, 22894158 - 22894197
Alignment:
Q  199 tatccaaggtcttatttggatggttgagatataaaatatt 238  Q
    |||||||||||| ||||||||| |||||||||||||||||    
T  22894158 tatccaaggtctgatttggatgattgagatataaaatatt 22894197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 238
Target Start/End: Original strand, 19534678 - 19534711
Alignment:
Q  205 aggtcttatttggatggttgagatataaaatatt 238  Q
    |||||| |||||||||||||||||||||||||||    
T  19534678 aggtctgatttggatggttgagatataaaatatt 19534711  T

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