View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18628_low_18 (Length: 226)

Name: NF18628_low_18
Description: NF18628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18628_low_18
NF18628_low_18
[»] chr8 (11 HSPs)
chr8 (16-203)||(895806-895993)
chr8 (18-79)||(5740788-5740848)
chr8 (37-78)||(41955927-41955967)
chr8 (17-80)||(37392130-37392192)
chr8 (37-80)||(43066627-43066669)
chr8 (37-78)||(3155841-3155881)
chr8 (36-77)||(9048348-9048388)
chr8 (17-78)||(29107993-29108053)
chr8 (48-80)||(26629153-26629185)
chr8 (17-81)||(41639801-41639864)
chr8 (48-80)||(42716316-42716348)
[»] chr6 (6 HSPs)
chr6 (16-79)||(31517181-31517243)
chr6 (36-78)||(8778904-8778945)
chr6 (37-79)||(9188977-9189018)
chr6 (36-78)||(26391317-26391358)
chr6 (17-78)||(2060635-2060695)
chr6 (48-80)||(31883347-31883379)
[»] chr7 (5 HSPs)
chr7 (18-79)||(6822536-6822596)
chr7 (32-78)||(23848087-23848132)
chr7 (17-79)||(30391156-30391217)
chr7 (38-78)||(40949934-40949974)
chr7 (48-80)||(43025805-43025837)
[»] scaffold0054 (1 HSPs)
scaffold0054 (16-79)||(31601-31663)
[»] chr2 (6 HSPs)
chr2 (17-80)||(4138187-4138249)
chr2 (37-80)||(18737907-18737949)
chr2 (37-79)||(1052529-1052570)
chr2 (18-76)||(7121390-7121447)
chr2 (18-76)||(27538919-27538976)
chr2 (36-76)||(41868401-41868441)
[»] chr4 (3 HSPs)
chr4 (18-80)||(46173546-46173607)
chr4 (17-78)||(4511823-4511883)
chr4 (37-77)||(34027894-34027934)
[»] chr5 (5 HSPs)
chr5 (50-79)||(33743378-33743407)
chr5 (37-77)||(1293119-1293158)
chr5 (18-78)||(4434480-4434539)
chr5 (18-78)||(14206398-14206457)
chr5 (48-76)||(15531995-15532023)
[»] chr3 (3 HSPs)
chr3 (37-78)||(37035613-37035654)
chr3 (18-79)||(43169756-43169816)
chr3 (17-73)||(34662020-34662076)
[»] chr1 (5 HSPs)
chr1 (17-78)||(49589976-49590036)
chr1 (38-78)||(14983782-14983821)
chr1 (48-80)||(24806265-24806297)
chr1 (37-77)||(25989017-25989056)
chr1 (18-78)||(45272163-45272222)


Alignment Details
Target: chr8 (Bit Score: 141; Significance: 4e-74; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 16 - 203
Target Start/End: Complemental strand, 895993 - 895806
Alignment:
Q  16 gtataatgtgagtaccatagaaaaagttgttaaaaaagtggttatacaaatatcatttctcttatcattatcatctaaaaattctc-aacaccttacttt 114  Q
    ||||||||||||||||| ||| |||||||| ||||| |||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||    
T  895993 gtataatgtgagtaccaaagagaaagttgtcaaaaa-gtggttgtacaaatatcatttcttttatcattatcatctaaaaattctctaacacctaacttt 895895  T
Q  115 tggtacattattattatgtacattgaatgctttgtgtactgatccggcatcaaagaaacatgaccatagaaacattaaaagataacgta 203  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  895894 tggtacattattattatgtacattgaatgctttttgtactgatccggcatcaaagaaacatgaccatagaaacatgaaaagataacgta 895806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 5740788 - 5740848
Alignment:
Q  18 ataatgtgagtaccatagaaaaagttgttaaaaaagtggttatacaaatatcatttctctta 79  Q
    ||||||||||||  | |||||||||||| |||| ||||||| ||||||||||||||||||||    
T  5740788 ataatgtgagtatgagagaaaaagttgtcaaaa-agtggttgtacaaatatcatttctctta 5740848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 78
Target Start/End: Complemental strand, 41955967 - 41955927
Alignment:
Q  37 aaaagttgttaaaaaagtggttatacaaatatcatttctctt 78  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  41955967 aaaagttgttaaaaaa-tggttatacaaatatcatttctctt 41955927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 37392130 - 37392192
Alignment:
Q  17 tataatgtgagtaccatagaaaaagttgttaaaaaagtggttatacaaatatcatttctcttat 80  Q
    |||||||||||||  | ||| |||||||| |||||| ||||| |||||||||||||||||||||    
T  37392130 tataatgtgagtatgagagagaaagttgtcaaaaaa-tggttgtacaaatatcatttctcttat 37392192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 43066627 - 43066669
Alignment:
Q  37 aaaagttgttaaaaaagtggttatacaaatatcatttctcttat 80  Q
    |||||||||||||| ||||||| |||||||||||||||||||||    
T  43066627 aaaagttgttaaaa-agtggttgtacaaatatcatttctcttat 43066669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 78
Target Start/End: Complemental strand, 3155881 - 3155841
Alignment:
Q  37 aaaagttgttaaaaaagtggttatacaaatatcatttctctt 78  Q
    ||||||||||||||| |||||| |||||||||||||||||||    
T  3155881 aaaagttgttaaaaa-gtggttgtacaaatatcatttctctt 3155841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 9048348 - 9048388
Alignment:
Q  36 aaaaagttgttaaaaaagtggttatacaaatatcatttctct 77  Q
    |||||||||||| |||| ||||||||||||||||||||||||    
T  9048348 aaaaagttgttagaaaa-tggttatacaaatatcatttctct 9048388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 29108053 - 29107993
Alignment:
Q  17 tataatgtgagtaccatagaaaaagttgttaaaaaagtggttatacaaatatcatttctctt 78  Q
    |||||||||||||  | ||| ||||||||||||||| || || |||||||||||||||||||    
T  29108053 tataatgtgagtataaaagagaaagttgttaaaaaa-tgattgtacaaatatcatttctctt 29107993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 26629153 - 26629185
Alignment:
Q  48 aaaaagtggttatacaaatatcatttctcttat 80  Q
    ||||||||||| |||||||||||||||||||||    
T  26629153 aaaaagtggttgtacaaatatcatttctcttat 26629185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 41639801 - 41639864
Alignment:
Q  17 tataatgtgagtaccatagaaaaagttgttaaaaaagtggttatacaaatatcatttctcttatc 81  Q
    |||||||||||||  | ||||||| |||||| |||| ||| | ||||||||||||||||||||||    
T  41639801 tataatgtgagtatgagagaaaaaattgttagaaaa-tggatgtacaaatatcatttctcttatc 41639864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 80
Target Start/End: Complemental strand, 42716348 - 42716316
Alignment:
Q  48 aaaaagtggttatacaaatatcatttctcttat 80  Q
    ||||||||||| |||||||||||||||||||||    
T  42716348 aaaaagtggttgtacaaatatcatttctcttat 42716316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 31517181 - 31517243
Alignment:
Q  16 gtataatgtgagtaccatagaaaaagttgttaaaaaagtggttatacaaatatcatttctctta 79  Q
    ||||||||||||||  | |||||||||||| |||| ||||||| ||||||||||||||||||||    
T  31517181 gtataatgtgagtatgagagaaaaagttgtcaaaa-agtggttgtacaaatatcatttctctta 31517243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 78
Target Start/End: Original strand, 8778904 - 8778945
Alignment:
Q  36 aaaaagttgttaaaaaagtggttatacaaatatcatttctctt 78  Q
    ||||||||||||||||| ||||| |||||||||||||||||||    
T  8778904 aaaaagttgttaaaaaa-tggttgtacaaatatcatttctctt 8778945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 79
Target Start/End: Original strand, 9188977 - 9189018
Alignment:
Q  37 aaaagttgttaaaaaagtggttatacaaatatcatttctctta 79  Q
    |||||||||||||||| ||||| ||||||||||||||||||||    
T  9188977 aaaagttgttaaaaaa-tggttgtacaaatatcatttctctta 9189018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 78
Target Start/End: Original strand, 26391317 - 26391358
Alignment:
Q  36 aaaaagttgttaaaaaagtggttatacaaatatcatttctctt 78  Q
    ||||||||||||||||| ||||| |||||||||||||||||||    
T  26391317 aaaaagttgttaaaaaa-tggttgtacaaatatcatttctctt 26391358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 2060635 - 2060695
Alignment:
Q  17 tataatgtgagtaccatagaaaaagttgttaaaaaagtggttatacaaatatcatttctctt 78  Q
    |||||||||||||  | |||||||||||| | |||| ||||||| |||||||||||||||||    
T  2060635 tataatgtgagtatgagagaaaaagttgtcataaaa-tggttattcaaatatcatttctctt 2060695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 31883347 - 31883379
Alignment:
Q  48 aaaaagtggttatacaaatatcatttctcttat 80  Q
    ||||||||||| |||||||||||||||||||||    
T  31883347 aaaaagtggttgtacaaatatcatttctcttat 31883379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 6822536 - 6822596
Alignment:
Q  18 ataatgtgagtaccatagaaaaagttgttaaaaaagtggttatacaaatatcatttctctta 79  Q
    ||||||||||||  | |||||||||||||| |||| ||||| ||||||||||||||||||||    
T  6822536 ataatgtgagtatgagagaaaaagttgttagaaaa-tggttgtacaaatatcatttctctta 6822596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 23848132 - 23848087
Alignment:
Q  32 atagaaaaagttgttaaaaaagtggttatacaaatatcatttctctt 78  Q
    ||||| ||||||||||||||| || ||||||||||||||||||||||    
T  23848132 atagagaaagttgttaaaaaa-tgattatacaaatatcatttctctt 23848087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 30391217 - 30391156
Alignment:
Q  17 tataatgtgagtaccatagaaaaagttgttaaaaaagtggttatacaaatatcatttctctta 79  Q
    |||||||||||||  | |||||||||||| | |||| | ||||||||||||||||||||||||    
T  30391217 tataatgtgagtataagagaaaaagttgtaataaaa-tagttatacaaatatcatttctctta 30391156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 40949934 - 40949974
Alignment:
Q  38 aaagttgttaaaaaagtggttatacaaatatcatttctctt 78  Q
    |||||||| |||||| | |||||||||||||||||||||||    
T  40949934 aaagttgtcaaaaaaatagttatacaaatatcatttctctt 40949974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 80
Target Start/End: Complemental strand, 43025837 - 43025805
Alignment:
Q  48 aaaaagtggttatacaaatatcatttctcttat 80  Q
    ||||||||||| |||||||||||||||||||||    
T  43025837 aaaaagtggttgtacaaatatcatttctcttat 43025805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 31601 - 31663
Alignment:
Q  16 gtataatgtgagtaccatagaaaaagttgttaaaaaagtggttatacaaatatcatttctctta 79  Q
    ||||||||||||||  | ||| |||||||| |||||| ||||| ||||||||||||||||||||    
T  31601 gtataatgtgagtatgagagagaaagttgtcaaaaaa-tggttgtacaaatatcatttctctta 31663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 4138187 - 4138249
Alignment:
Q  17 tataatgtgagtaccatagaaaaagttgttaaaaaagtggttatacaaatatcatttctcttat 80  Q
    |||||||||||||  | ||| |||||||||| |||| | |||||||||||||||||||||||||    
T  4138187 tataatgtgagtatgagagagaaagttgttagaaaa-tagttatacaaatatcatttctcttat 4138249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 18737907 - 18737949
Alignment:
Q  37 aaaagttgttaaaaaagtggttatacaaatatcatttctcttat 80  Q
    |||||||||||||||| ||| |||||||||||||||||||||||    
T  18737907 aaaagttgttaaaaaa-tggatatacaaatatcatttctcttat 18737949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 79
Target Start/End: Original strand, 1052529 - 1052570
Alignment:
Q  37 aaaagttgttaaaaaagtggttatacaaatatcatttctctta 79  Q
    |||||||||||||||| ||||| ||||||||||||||||||||    
T  1052529 aaaagttgttaaaaaa-tggttgtacaaatatcatttctctta 1052570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 7121447 - 7121390
Alignment:
Q  18 ataatgtgagtaccatagaaaaagttgttaaaaaagtggttatacaaatatcatttctc 76  Q
    ||||||||||||  | ||| |||||||||| |||| |||||||||||||||||||||||    
T  7121447 ataatgtgagtatgagagagaaagttgttacaaaa-tggttatacaaatatcatttctc 7121390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 27538919 - 27538976
Alignment:
Q  18 ataatgtgagtaccatagaaaaagttgttaaaaaagtggttatacaaatatcatttctc 76  Q
    |||||||||||| |||||| ||||||| || |||| ||||| |||||||||||||||||    
T  27538919 ataatgtgagtatcatagagaaagttg-tacaaaaatggttgtacaaatatcatttctc 27538976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 41868401 - 41868441
Alignment:
Q  36 aaaaagttgttaaaaaagtggttatacaaatatcatttctc 76  Q
    ||||||||||||||||| || || |||||||||||||||||    
T  41868401 aaaaagttgttaaaaaaatgattgtacaaatatcatttctc 41868441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 46173607 - 46173546
Alignment:
Q  18 ataatgtgagtaccatagaaaaagttgttaaaaaagtggttatacaaatatcatttctcttat 80  Q
    ||||||||||||| | ||| |||||||| | ||| |||||| |||||||||||||||||||||    
T  46173607 ataatgtgagtacgagagagaaagttgtcacaaa-gtggttgtacaaatatcatttctcttat 46173546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 4511883 - 4511823
Alignment:
Q  17 tataatgtgagtaccatagaaaaagttgttaaaaaagtggttatacaaatatcatttctctt 78  Q
    |||||||||||||  | ||| |||||||| | |||| |||||||||||||||||||||||||    
T  4511883 tataatgtgagtatgagagagaaagttgtcataaaa-tggttatacaaatatcatttctctt 4511823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 34027934 - 34027894
Alignment:
Q  37 aaaagttgttaaaaaagtggttatacaaatatcatttctct 77  Q
    |||||||||||||||| | ||| ||||||||||||||||||    
T  34027934 aaaagttgttaaaaaaattgttgtacaaatatcatttctct 34027894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 79
Target Start/End: Original strand, 33743378 - 33743407
Alignment:
Q  50 aaagtggttatacaaatatcatttctctta 79  Q
    ||||||||||||||||||||||||||||||    
T  33743378 aaagtggttatacaaatatcatttctctta 33743407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 1293119 - 1293158
Alignment:
Q  37 aaaagttgttaaaaaagtggttatacaaatatcatttctct 77  Q
    |||||||||||||||| ||||| ||||||||||||||||||    
T  1293119 aaaagttgttaaaaaa-tggttgtacaaatatcatttctct 1293158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 4434539 - 4434480
Alignment:
Q  18 ataatgtgagtaccatagaaaaagttgttaaaaaagtggttatacaaatatcatttctctt 78  Q
    ||||||||||||  | ||||||| |||| |||||| ||||| |||||||||||||||||||    
T  4434539 ataatgtgagtatgagagaaaaaattgtcaaaaaa-tggttgtacaaatatcatttctctt 4434480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 14206457 - 14206398
Alignment:
Q  18 ataatgtgagtaccatagaaaaagttgttaaaaaagtggttatacaaatatcatttctctt 78  Q
    ||||||||||||  | ||| |||||||| |||||| ||||| |||||||||||||||||||    
T  14206457 ataatgtgagtatgagagagaaagttgtcaaaaaa-tggttgtacaaatatcatttctctt 14206398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 76
Target Start/End: Original strand, 15531995 - 15532023
Alignment:
Q  48 aaaaagtggttatacaaatatcatttctc 76  Q
    |||||||||||||||||||||||||||||    
T  15531995 aaaaagtggttatacaaatatcatttctc 15532023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 78
Target Start/End: Complemental strand, 37035654 - 37035613
Alignment:
Q  37 aaaagttgttaaaaaagtggttatacaaatatcatttctctt 78  Q
    ||||||||| |||||| |||||||||||||||||||| ||||    
T  37035654 aaaagttgtcaaaaaaatggttatacaaatatcatttatctt 37035613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 43169756 - 43169816
Alignment:
Q  18 ataatgtgagtaccatagaaaaagttgttaaaaaagtggttatacaaatatcatttctctta 79  Q
    ||||||||||||  | |||||||||||| | |||| ||||| ||||||||||||||||||||    
T  43169756 ataatgtgagtatgagagaaaaagttgtcacaaaa-tggttgtacaaatatcatttctctta 43169816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 34662076 - 34662020
Alignment:
Q  17 tataatgtgagtaccatagaaaaagttgttaaaaaagtggttatacaaatatcattt 73  Q
    |||||||||||||  | ||| ||||||| |||||||  |||||||||||||||||||    
T  34662076 tataatgtgagtatgagagataaagttgctaaaaaatgggttatacaaatatcattt 34662020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 49589976 - 49590036
Alignment:
Q  17 tataatgtgagtaccatagaaaaagttgttaaaaaagtggttatacaaatatcatttctctt 78  Q
    |||||||||||||  | | |||||||||| || ||||||||| |||||||||||||||||||    
T  49589976 tataatgtgagtatgagataaaaagttgt-aataaagtggttgtacaaatatcatttctctt 49590036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 14983821 - 14983782
Alignment:
Q  38 aaagttgttaaaaaagtggttatacaaatatcatttctctt 78  Q
    |||||||||||||| |||||| |||||||||||||||||||    
T  14983821 aaagttgttaaaaa-gtggttgtacaaatatcatttctctt 14983782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 24806265 - 24806297
Alignment:
Q  48 aaaaagtggttatacaaatatcatttctcttat 80  Q
    ||||||||||||| |||||||||||||||||||    
T  24806265 aaaaagtggttattcaaatatcatttctcttat 24806297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 25989017 - 25989056
Alignment:
Q  37 aaaagttgttaaaaaagtggttatacaaatatcatttctct 77  Q
    |||||||||||||||| ||||| ||||||||||||||||||    
T  25989017 aaaagttgttaaaaaa-tggttgtacaaatatcatttctct 25989056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 45272163 - 45272222
Alignment:
Q  18 ataatgtgagtaccatagaaaaagttgttaaaaaagtggttatacaaatatcatttctctt 78  Q
    ||||||||||||  | ||| |||||||| |||| ||||||| |||||||||||||||||||    
T  45272163 ataatgtgagtatgagagagaaagttgtcaaaa-agtggttgtacaaatatcatttctctt 45272222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University