View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18628_low_19 (Length: 213)
Name: NF18628_low_19
Description: NF18628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18628_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 34340207 - 34340383
Alignment:
| Q |
14 |
cctgtgtgtgtgctttagtcagttgtttgagcagcagtttttgcttcttccatgtaggtgttttggtgttgtttggcgtggccgtgttttttagcattgg |
113 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
34340207 |
cctgtgtgtgtgctttagtcagttgtttgagcagcaggttttgcttcttccatgtaggtgttttggtgctgtttggcgtggccgtgtttttgagcattgg |
34340306 |
T |
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| Q |
114 |
ccctttgtaatctgtttttctgttcgcattcttaggtgtgtcttataccttagttctgcttaataaaatttaggaag |
190 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
34340307 |
ccctttgtaatctgtttttctgttcgcattcttaggtgtgtcttacaccttagttctgcttaataaaatttaggaag |
34340383 |
T |
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Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 26128069 - 26128245
Alignment:
| Q |
14 |
cctgtgtgtgtgctttagtcagttgtttgagcagcagtttttgcttcttccatgtaggtgttttggtgttgtttggcgtggccgtgttttttagcattgg |
113 |
Q |
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|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||| |
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| T |
26128069 |
cctgtgtgtgcgctttagtcagttgtttgagcagcaggttttgcttcttccatgtaggtgttttggtgctgtttggtgtggccgtgtttttgagcattgg |
26128168 |
T |
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| Q |
114 |
ccctttgtaatctgtttttctgttcgcattcttaggtgtgtcttataccttagttctgcttaataaaatttaggaag |
190 |
Q |
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| T |
26128169 |
ccctttgtaatctgtttttctgttcgcattcttaggtgtgtcttacaccttagttctgcttaataaaatttaggaag |
26128245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 14 - 178
Target Start/End: Original strand, 23101339 - 23101503
Alignment:
| Q |
14 |
cctgtgtgtgtgctttagtcagttgtttgagcagcagtttttgcttcttccatgtaggtgttttggtgttgtttggcgtggccgtgttttttagcattgg |
113 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
23101339 |
cctgtgtgtgtgctttagtcagttgtttgagcagcaggttttgcttcttccatgtaggtgttttggtgctgtttggcgtggccgtgtttttgagcattgg |
23101438 |
T |
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| Q |
114 |
ccctttgtaatctgtttttctgttcgcattcttaggtgtgtcttataccttagttctgcttaata |
178 |
Q |
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| T |
23101439 |
ccctttgtaatctgtttttctgatcgcattcttaggtgtgtcttacaccttagttctgcttaata |
23101503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 101 - 190
Target Start/End: Original strand, 23102257 - 23102346
Alignment:
| Q |
101 |
tttttagcattggccctttgtaatctgtttttctgttcgcattcttaggtgtgtcttataccttagttctgcttaataaaatttaggaag |
190 |
Q |
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|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
23102257 |
ttttgagcattggccctttgtaatctgtttttctgatcgcattcttaggtgtgtcttacaccttagttctgcttaataaaatttaggaag |
23102346 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 6720319 - 6720495
Alignment:
| Q |
14 |
cctgtgtgtgtgctttagtcagttgtttgagcagcagtttttgcttcttccatgtaggtgttttggtgttgtttggcgtggccgtgttttttagcattgg |
113 |
Q |
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||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||| ||||| |||||||||||||||| |||||||| |
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| T |
6720319 |
cctgtgtgtgtgctttagttagttgtttgagcagcaaattttgcttcttccatgtaggtgtcttggtgctgtttagcgtggccgtgtttttgagcattgg |
6720418 |
T |
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| Q |
114 |
ccctttgtaatctgtttttctgttcgcattcttaggtgtgtcttataccttagttctgcttaataaaatttaggaag |
190 |
Q |
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| T |
6720419 |
ccctttgtaatctgtttttctgttcgcattcttaggtgtgtcttacaccttagttctgcttaataaaatttaggaag |
6720495 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 52 - 190
Target Start/End: Original strand, 51655655 - 51655792
Alignment:
| Q |
52 |
ttttgcttcttccatgtaggtgttttggtgttgtttggcgtggccgtgttttttagcattggccctttgtaatctgtttttctgttcgcattcttaggtg |
151 |
Q |
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| T |
51655655 |
ttttgcttcttccatgtaggtgttttggtgctgtttggcgtggccgtgttttg-agcattggccctttgtaatctgtttttctgttcgcattcttaggtg |
51655753 |
T |
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| Q |
152 |
tgtcttataccttagttctgcttaataaaatttaggaag |
190 |
Q |
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||||||| ||||||||||||||||||||||||||||||| |
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| T |
51655754 |
tgtcttacaccttagttctgcttaataaaatttaggaag |
51655792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 78 - 186
Target Start/End: Original strand, 22623108 - 22623216
Alignment:
| Q |
78 |
ggtgttgtttggcgtggccgtgttttttagcattggccctttgtaatctgtttttctgtt---cgcattcttaggtgtgtcttataccttagttctgctt |
174 |
Q |
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|||||| ||||| ||||| |||||| | ||||| ||| |||||||||||||||||| || ||| ||| ||||||||||||| ||| |||||||||| |
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| T |
22623108 |
ggtgttttttggtgtggcagtgtttat--gcattagccttttgtaatctgtttttctttttttcgcgttcgtaggtgtgtcttacacca-agttctgctt |
22623204 |
T |
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| Q |
175 |
aataaaatttag |
186 |
Q |
| |
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|||||||||||| |
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| T |
22623205 |
aataaaatttag |
22623216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 186
Target Start/End: Complemental strand, 32122520 - 32122474
Alignment:
| Q |
139 |
gcattcttaggtgtgtcttataccttagttctgcttaataaaatttag |
186 |
Q |
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|||||||||||||||||||| ||| |||||| |||||||||||||||| |
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| T |
32122520 |
gcattcttaggtgtgtcttacacc-tagttcagcttaataaaatttag |
32122474 |
T |
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