View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18628_low_2 (Length: 518)

Name: NF18628_low_2
Description: NF18628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18628_low_2
NF18628_low_2
[»] chr7 (22 HSPs)
chr7 (17-515)||(29921934-29922426)
chr7 (173-473)||(29454086-29454386)
chr7 (216-480)||(29881086-29881350)
chr7 (218-480)||(29867071-29867330)
chr7 (173-471)||(29476325-29476623)
chr7 (271-480)||(29874395-29874605)
chr7 (229-444)||(29920055-29920270)
chr7 (224-409)||(29885086-29885271)
chr7 (218-458)||(29859286-29859526)
chr7 (169-432)||(29106591-29106860)
chr7 (219-487)||(29430970-29431235)
chr7 (224-425)||(29899206-29899413)
chr7 (218-447)||(29895298-29895530)
chr7 (338-432)||(29445680-29445774)
chr7 (387-474)||(660829-660916)
chr7 (391-473)||(14076683-14076765)
chr7 (391-473)||(14386711-14386793)
chr7 (256-315)||(18953046-18953105)
chr7 (256-315)||(18983093-18983152)
chr7 (256-315)||(18997739-18997798)
chr7 (392-455)||(19604464-19604527)
chr7 (387-468)||(19344563-19344644)
[»] chr1 (8 HSPs)
chr1 (219-476)||(4366475-4366732)
chr1 (224-480)||(21855359-21855615)
chr1 (242-458)||(39379059-39379275)
chr1 (232-477)||(17560752-17560997)
chr1 (243-456)||(4570780-4570997)
chr1 (232-480)||(10218825-10219079)
chr1 (389-478)||(4014943-4015032)
chr1 (253-369)||(4016859-4016974)
[»] chr3 (1 HSPs)
chr3 (227-480)||(3625575-3625828)
[»] chr4 (8 HSPs)
chr4 (227-480)||(3560934-3561187)
chr4 (242-458)||(3557582-3557798)
chr4 (224-458)||(3565582-3565816)
chr4 (224-374)||(1686367-1686517)
chr4 (387-480)||(53430075-53430168)
chr4 (356-458)||(53774810-53774912)
chr4 (387-474)||(11970964-11971051)
chr4 (387-467)||(35767019-35767099)
[»] chr5 (2 HSPs)
chr5 (224-480)||(24330875-24331131)
chr5 (353-464)||(29597544-29597655)
[»] scaffold0242 (2 HSPs)
scaffold0242 (173-480)||(13706-14013)
scaffold0242 (173-480)||(22541-22848)
[»] chr6 (4 HSPs)
chr6 (387-474)||(20770651-20770738)
chr6 (387-456)||(6921350-6921419)
chr6 (388-456)||(6947880-6947948)
chr6 (397-477)||(17369675-17369755)
[»] chr2 (5 HSPs)
chr2 (387-463)||(20975559-20975635)
chr2 (389-477)||(14514903-14514991)
chr2 (387-483)||(18908782-18908878)
chr2 (387-483)||(18913530-18913626)
chr2 (387-483)||(18920738-18920834)


Alignment Details
Target: chr7 (Bit Score: 432; Significance: 0; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 17 - 515
Target Start/End: Complemental strand, 29922426 - 29921934
Alignment:
Q  17 acaatcgactaaaaggaaatagaaatataaagattctaggttcgggtgatcatgtttggagagatattgcatttttcccggtggttcctcttcgtttgga 116  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29922426 acaatagactaaaaggaaatagaaatataaagattctaggttcgggtgatcatgtttggagagatattgcatttttcccggtggttcctcttcgtttgga 29922327  T
Q  117 ctatagtgatcatattcatagtgaacattgtatgtgtgatggtgtttacgtaagtggcacttttaactggttggctatccacaatgaccttccctatcgt 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29922326 ctatagtgatcatattcatagtgaacattgtatgtgtgatggtgtttacgtaagtggcacttttaactggttggctatccacaacgaccttccctatcgt 29922227  T
Q  217 gttaagaatattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgc 316  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||    
T  29922226 gttaagaatattacagttgaacattttgttatcgtttctcttgatttagggacggagacatacaatcaatatctgttgcctc------ttgatgaagtgc 29922133  T
Q  317 catctgcagaaccaaccgttggtgtgttggggggctgcctttgtttttcttatccttacaaagaaactgcttttgttatatggcagatgaagaaatttgg 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  29922132 catctgcagaaccaaccgttggtgtgttggggggctgcctttgtttttcttatgcttacaaagaaactgattttgttatatggcagatgaagaaatttgg 29922033  T
Q  417 ggatgaagattcttggtttcaattccttagaattagttatcaacatcttctaatagattatgacatttttgtctgttattttcgattggtgcctttgct 515  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |  |||||||||||||||||| |||||    
T  29922032 ggatgaagattcttggtctcaattccttagaattagttatcaaaatcttctaatagattatgacatttttgacacttattttcgattggtgccattgct 29921934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 173 - 473
Target Start/End: Complemental strand, 29454386 - 29454086
Alignment:
Q  173 gcacttttaactggttggctatccacaatgaccttccctatcgtgttaagaatattacagttgaacattttgttatcgtgtctcttgatttagggacgga 272  Q
    ||||| |||| ||||||||||| |||||| || | | ||||  |  ||||||||| |||||||| || ||||||||  | || |||||||| ||||| ||    
T  29454386 gcactcttaattggttggctattcacaatcacttgcactataatagtaagaatatcacagttgagcagtttgttattatttcacttgatttggggactga 29454287  T
Q  273 gacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgcagaaccaaccgttggtgtgttggggggctgcctttgtttttcttatcct 372  Q
    ||| |||||| | || |  |||||||||| ||||||||| |||||| ||| ||  ||||| |||||||| ||||||||  ||||||||||||||||| ||    
T  29454286 gacgtacaataagtaccaattgcctcgtgattttgatgaggtgccacctgaagctccaacggttggtgttttggggggaagcctttgtttttcttattct 29454187  T
Q  373 tacaaagaaactgcttttgttatatggcagatgaagaaatttggggatgaagattcttggtttcaattccttagaattagttatcaacatcttctaatag 472  Q
    ||||| ||| | | |||||||||||||| ||||| ||||||||| | |||||||||||||  ||||||| ||| ||||||||||||| |||||| |||||    
T  29454186 tacaaggaacccgattttgttatatggcggatgatgaaatttggagttgaagattcttggactcaattctttaaaattagttatcaagatcttcaaatag 29454087  T
Q  473 a 473  Q
    |    
T  29454086 a 29454086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 216 - 480
Target Start/End: Original strand, 29881086 - 29881350
Alignment:
Q  216 tgttaagaatattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtg 315  Q
    ||||||| ||||||| ||||| || |||||||| || || |||||||| ||||| |||||||||||||||||||   ||||||   |||||||||| |||    
T  29881086 tgttaaggatattactgttgaccaatttgttattgtttcacttgatttggggactgagacatacaatcaatatcgactgcctccgagttttgatgaggtg 29881185  T
Q  316 ccatctgcagaaccaaccgttggtgtgttggggggctgcctttgtttttcttatccttacaaagaaactgcttttgttatatggcagatgaagaaatttg 415  Q
    ||| |||||  |||||  ||||||||||||| || ||||||||| |||| ||||  |||||| ||||||| |||| || | ||||| |||||||||||||    
T  29881186 ccacctgcacgaccaattgttggtgtgttggaggactgcctttgcttttgttattgttacaaggaaactgattttattgtttggcaaatgaagaaatttg 29881285  T
Q  416 gggatgaagattcttggtttcaattccttagaattagttatcaacatcttctaatagattatgac 480  Q
    ||| |||||||||||||  ||||||||||||||||||||| ||   ||||| ||| |||||||||    
T  29881286 gggttgaagattcttggactcaattccttagaattagttaccatagtcttcaaattgattatgac 29881350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 218 - 480
Target Start/End: Original strand, 29867071 - 29867330
Alignment:
Q  218 ttaagaatattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgcc 317  Q
    ||||| ||||||| ||||| || |||||||| || || |||||||| ||||| |||| |||||||||||| |   ||||||   |||||||||| |||||    
T  29867071 ttaaggatattactgttgaccagtttgttattgtttcacttgatttggggactgagaaatacaatcaataccgactgcctccaagttttgatgaggtgcc 29867170  T
Q  318 atctgcagaaccaaccgttggtgtgttggggggctgcctttgtttttcttatccttacaaagaaactgcttttgttatatggcagatgaagaaatttggg 417  Q
     |||||| | || |  |||||||||||||||| ||||||||||||||||||| ||   || ||||||| |||| |||||||||| ||||||||||| |||    
T  29867171 gtctgcatatcctattgttggtgtgttgggggactgcctttgtttttcttattct---aaggaaactgattttattatatggcaaatgaagaaattcggg 29867267  T
Q  418 gatgaagattcttggtttcaattccttagaattagttatcaacatcttctaatagattatgac 480  Q
    | |||||||||||||  ||||||||||||||||||||| ||  |||||| ||| |||||||||    
T  29867268 gttgaagattcttggactcaattccttagaattagttaccataatcttcaaattgattatgac 29867330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 173 - 471
Target Start/End: Complemental strand, 29476623 - 29476325
Alignment:
Q  173 gcacttttaactggttggctatccacaatgaccttccctatcgtgttaagaatattacagttgaacattttgttatcgtgtctcttgatttagggacgga 272  Q
    ||||| |||| ||||||||||| ||||||||| ||  ||||  | |||||||| ||| |||||| || |||||||| || || || |||||||| || ||    
T  29476623 gcactcttaattggttggctattcacaatgactttgactatgatattaagaatcttagagttgagcagtttgttattgtttcactcgatttaggaactga 29476524  T
Q  273 gacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgcagaaccaaccgttggtgtgttggggggctgcctttgtttttcttatcct 372  Q
    ||||||||||||||| |   ||||||||| |||||||||| ||||||||||    ||||  |||| |||||||||||||| |||||||| ||| |||  |    
T  29476523 gacatacaatcaataccgtctgcctcgtgattttgatgaaatgccatctgccctgccaattgttgctgtgttggggggcttcctttgttgttcctatttt 29476424  T
Q  373 tacaaagaaactgcttttgttatatggcagatgaagaaatttggggatgaagattcttggtttcaattccttagaattagttatcaacatcttctaata 471  Q
    ||||| ||||| | |||| ||||||||||||||||| |||| ||| ||||  | ||||||  |||||| |||| ||| ||||||||| |||||| ||||    
T  29476423 tacaaggaaaccgattttcttatatggcagatgaaggaattagggaatgacaactcttggactcaatttcttaaaataagttatcaaaatcttcaaata 29476325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 271 - 480
Target Start/End: Original strand, 29874395 - 29874605
Alignment:
Q  271 gagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgcagaaccaaccgttggtgtgttgggggg-ctgcctttgtttttcttat 369  Q
    |||||||||||||  ||  | |||||||||| ||||||||| |||||| ||||| ||||||   | |||||||||||| | ||| |||||||||||||||    
T  29874395 gagacatacaatcggtacttcttgcctcgtgattttgatgaggtgccacctgcacaaccaaatataggtgtgttggggcgactgtctttgtttttcttat 29874494  T
Q  370 ccttacaaagaaactgcttttgttatatggcagatgaagaaatttggggatgaagattcttggtttcaattccttagaattagttatcaacatcttctaa 469  Q
      |||||| ||||||| |||  |||||||||| |||||||||||||||| |||||||||||||  || ||| |||| ||||||||||||| |||||| ||    
T  29874495 tgttacaaggaaactgatttcattatatggcaaatgaagaaatttggggttgaagattcttggactccattacttaaaattagttatcaaaatcttcaaa 29874594  T
Q  470 tagattatgac 480  Q
    | |||||||||    
T  29874595 ttgattatgac 29874605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 229 - 444
Target Start/End: Complemental strand, 29920270 - 29920055
Alignment:
Q  229 acagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgcagaac 328  Q
    ||||||||||| |||||||| || |||||  |||| ||||| ||||| ||| |||| ||| |  |||| ||||| |||||||||||||||  || |||||    
T  29920270 acagttgaacaatttgttattgtttctctccatttggggacagagacctaccatcagtatttactgccccgtggatttgatgaagtgccacttgtagaac 29920171  T
Q  329 caaccgttggtgtgttggggggctgcctttgtttttcttatccttacaaagaaactgcttttgttatatggcagatgaagaaatttggggatgaagattc 428  Q
    ||||  ||||||||||||| |||||||||| || ||||||| ||||||| ||||| |  ||| | |||||| ||||||||||||| ||   |||| ||||    
T  29920170 caactcttggtgtgttgggaggctgccttttttcttcttattcttacaaggaaaccgaatttataatatggaagatgaagaaattcggacttgaatattc 29920071  T
Q  429 ttggtttcaattcctt 444  Q
    ||||||||||||||||    
T  29920070 ttggtttcaattcctt 29920055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 224 - 409
Target Start/End: Original strand, 29885086 - 29885271
Alignment:
Q  224 atattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgc 323  Q
    |||| |||||||  || |||||||| || || |||||||| | |||||||||||| || || ||  ||||||||| ||| |||||||||||||| ||||     
T  29885086 atatcacagttgggcaatttgttattgtttcacttgatttggagacggagacatagaagcagtacatgttgcctcctgggtttgatgaagtgccgtctgt 29885185  T
Q  324 agaaccaaccgttggtgtgttggggggctgcctttgtttttcttatccttacaaagaaactgcttttgttatatggcagatgaaga 409  Q
     || |||||  |||||||| | ||||||||||||||||||||||||  || ||| ||||||| |||||||||||||||||||||||    
T  29885186 ggagccaacatttggtgtgctagggggctgcctttgtttttcttatttttccaaggaaactgattttgttatatggcagatgaaga 29885271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 218 - 458
Target Start/End: Original strand, 29859286 - 29859526
Alignment:
Q  218 ttaagaatattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgcc 317  Q
    ||||| ||||||| || ||||| |||||||| || || |||||||| ||||  || ||||||||||||||  | ||||||||||| |||||||| |||||    
T  29859286 ttaaggatattactgtcgaacaatttgttattgtttcacttgatttggggagtgaaacatacaatcaatacttattgcctcgtgggtttgatgaggtgcc 29859385  T
Q  318 atctgcagaaccaaccgttggtgtgttggggggctgcctttgtttttcttatccttacaaagaaactgcttttgttatatggcagatgaagaaatttggg 417  Q
      |||    ||||||  ||||||||||||||| |   |||||||||||||||  |||||| |||| || ||| ||||||||| ||||||||||||||||     
T  29859386 gcctgtgataccaactattggtgtgttgggggaccatctttgtttttcttattgttacaaggaaattgatttcgttatatgggagatgaagaaatttgga 29859485  T
Q  418 gatgaagattcttggtttcaattccttagaattagttatca 458  Q
    | |||||||||||||   | ||| |||| ||||||||||||    
T  29859486 gttgaagattcttggaccccatttcttaaaattagttatca 29859526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 169 - 432
Target Start/End: Original strand, 29106591 - 29106860
Alignment:
Q  169 agtggcacttttaactggttggctatccacaatgaccttccctatcgtgttaagaatattacagttgaacattttgttatcgtgtctcttgatttaggga 268  Q
    ||||||||| |||||||||||||||| ||||||  |||    |||  | || || ||||||||||||  || |||||||| || || |||||||   |||    
T  29106591 agtggcactcttaactggttggctattcacaatagcctcgattataattttgaggatattacagttggtcaatttgttattgtttcacttgattggagga 29106690  T
Q  269 cggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgcagaaccaaccgttggtgtgttggggggctgcctttgtttttctta 368  Q
     ||||||||||||||||||   |||||||||||| |||||||||||||| ||   |   ||||| |||||||||||||||||||||||||||||||||||    
T  29106691 tggagacatacaatcaatacaagttgcctcgtgggtttgatgaagtgccgtcaaaacggccaacagttggtgtgttggggggctgcctttgtttttctta 29106790  T
Q  369 tccttacaaagaaac------tgcttttgttatatggcagatgaagaaatttggggatgaagattcttgg 432  Q
    |   |||  | ||||      || ||||||| |||||||||||||||||||||||| |||||| ||||||    
T  29106791 tttatacgtaaaaacagattttgattttgttgtatggcagatgaagaaatttggggttgaagagtcttgg 29106860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 219 - 487
Target Start/End: Complemental strand, 29431235 - 29430970
Alignment:
Q  219 taagaatattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgcca 318  Q
    |||| |||||||| |||| || ||||||||  | || |||||||| ||||| |||||||| ||| | ||  |||||||||||| ||||||||| ||||||    
T  29431235 taaggatattacaattgagcagtttgttattctttcgcttgatttggggactgagacatataataagtacttgttgcctcgtgattttgatgaggtgcca 29431136  T
Q  319 tctgcagaaccaaccgttggtgtgttggggggctgcctttgtttttcttatccttacaaagaaactgcttttgttatatggcagatgaagaaatttgggg 418  Q
    | |   |  ||||  |||  ||| |||||||| |||||||||||||||||| ||   || || ||   |||||||||||||| ||||| |||||||||||    
T  29431135 tttatggctccaatggttcatgttttggggggatgcctttgtttttcttattct---aaggacacctattttgttatatggcggatgatgaaatttgggg 29431039  T
Q  419 atgaagattcttggtttcaattccttagaattagttatcaacatcttctaatagattatgacatttttg 487  Q
     | |||||||||||   |||||||||| ||||||||||||  |||||| ||||||||||||| ||||||    
T  29431038 ctaaagattcttggacccaattccttaaaattagttatcaggatcttcaaatagattatgacttttttg 29430970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 224 - 425
Target Start/End: Original strand, 29899206 - 29899413
Alignment:
Q  224 atattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgc 323  Q
    |||| |||||||  || |||||||| || || |||||||| | |||||||||||| || || ||  ||||||||| ||| |||||||||||||| ||||     
T  29899206 atatcacagttgggcaatttgttattgtttcacttgatttggagacggagacatagaagcagtacatgttgcctcctgggtttgatgaagtgccgtctgt 29899305  T
Q  324 agaaccaaccgttggtgtgttggggggctgcctttgtttttcttatccttacaaagaaac------tgcttttgttatatggcagatgaagaaatttggg 417  Q
     || |||||  ||||||||||||||||||||||||||||||||| |  ||||||  | ||      || |||||||||||||||||||||||||||||||    
T  29899306 ggagccaacatttggtgtgttggggggctgcctttgtttttcttgtttttacaataataccaattttgattttgttatatggcagatgaagaaatttggg 29899405  T
Q  418 gatgaaga 425  Q
    | ||||||    
T  29899406 gttgaaga 29899413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 218 - 447
Target Start/End: Original strand, 29895298 - 29895530
Alignment:
Q  218 ttaagaatattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgcc 317  Q
    |||||||| ||| |||||| || |||||||| || || |||||  | || |||||||| ||||||||||| ||| ||||||  ||||||||||| |||||    
T  29895298 ttaagaatcttagagttgagcaatttgttattgtttcgcttgagctgggaacggagacttacaatcaatacctgctgcctctgggttttgatgaggtgcc 29895397  T
Q  318 atctgcagaaccaaccgttggtgtgttggggggctgcctttgtttttcttatcctt---acaaagaaactgcttttgttatatggcagatgaagaaattt 414  Q
      || || ||||||| ||| |||| ||||| ||||| ||||||||||||||| |||   |||| ||||  |  |||||| ||||||||||||||||||||    
T  29895398 ccctacacaaccaacggttagtgtcttgggtggctgtctttgtttttcttattcttctgacaaggaaaacgaatttgttttatggcagatgaagaaattt 29895497  T
Q  415 ggggatgaagattcttggtttcaattccttaga 447  Q
    |||   ||||| ||||||  |||||| ||||||    
T  29895498 gggatagaagagtcttggagtcaattacttaga 29895530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 338 - 432
Target Start/End: Complemental strand, 29445774 - 29445680
Alignment:
Q  338 gtgtgttggggggctgcctttgtttttcttatccttacaaagaaactgcttttgttatatggcagatgaagaaatttggggatgaagattcttgg 432  Q
    ||||||||||||||| |||||||| |||||||  |||||| ||||| | |||| ||||||||||||||||| |||| |||| |||||| ||||||    
T  29445774 gtgtgttggggggcttcctttgttgttcttatttttacaaggaaaccgattttcttatatggcagatgaaggaattaggggttgaagactcttgg 29445680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 387 - 474
Target Start/End: Complemental strand, 660916 - 660829
Alignment:
Q  387 ttttgttatatggcagatgaagaaatttggggatgaagattcttggtttcaattccttagaattagttatcaacatcttctaatagat 474  Q
    |||||||||||||||||||||| ||||| | | |||||| ||||||  ||||||||||| ||||||||||||  |||||| |||||||    
T  660916 ttttgttatatggcagatgaaggaatttcgagttgaagagtcttggactcaattccttaaaattagttatcataatcttcaaatagat 660829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 473
Target Start/End: Original strand, 14076683 - 14076765
Alignment:
Q  391 gttatatggcagatgaagaaatttggggatgaagattcttggtttcaattccttagaattagttatcaacatcttctaataga 473  Q
    ||||||||||| |||||| ||||||| | |||||| ||||||  |||||| |||| ||||||||||||  |||||| ||||||    
T  14076683 gttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttatcagaatcttcaaataga 14076765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 473
Target Start/End: Original strand, 14386711 - 14386793
Alignment:
Q  391 gttatatggcagatgaagaaatttggggatgaagattcttggtttcaattccttagaattagttatcaacatcttctaataga 473  Q
    ||||||||||| |||||| ||||||| | |||||| ||||||  |||||| |||| ||||||||||||  |||||| ||||||    
T  14386711 gttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttatcagaatcttcaaataga 14386793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 315
Target Start/End: Complemental strand, 18953105 - 18953046
Alignment:
Q  256 cttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtg 315  Q
    ||||||||  ||||||||||||||||||||| |||  | |||| ||||||||||||||||    
T  18953105 cttgatttgaggacggagacatacaatcaatttctactccctcttggttttgatgaagtg 18953046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 315
Target Start/End: Complemental strand, 18983152 - 18983093
Alignment:
Q  256 cttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtg 315  Q
    ||||||||  ||||||||||||||||||||| |||  | |||| ||||||||||||||||    
T  18983152 cttgatttgaggacggagacatacaatcaatttctactccctcttggttttgatgaagtg 18983093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 315
Target Start/End: Complemental strand, 18997798 - 18997739
Alignment:
Q  256 cttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtg 315  Q
    ||||||||  ||||||||||||||||||||| |||  | |||| ||||||||||||||||    
T  18997798 cttgatttgaggacggagacatacaatcaatttctactccctcttggttttgatgaagtg 18997739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 455
Target Start/End: Complemental strand, 19604527 - 19604464
Alignment:
Q  392 ttatatggcagatgaagaaatttggggatgaagattcttggtttcaattccttagaattagtta 455  Q
    ||||||||||||||||| ||||||| | |||||| || |||  ||||||||||| |||||||||    
T  19604527 ttatatggcagatgaaggaatttggagttgaagactcctggactcaattccttaaaattagtta 19604464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 468
Target Start/End: Complemental strand, 19344644 - 19344563
Alignment:
Q  387 ttttgttatatggcagatgaagaaatttggggatgaagattcttggtttcaattccttagaattagttatcaacatcttcta 468  Q
    |||||||||||||||||||| | ||||||| | |||| | ||||||  |||||| |||| |||||||| |||  ||||||||    
T  19344644 ttttgttatatggcagatgatggaatttggagttgaacaatcttggactcaatttcttaaaattagttttcagaatcttcta 19344563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 3e-55; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 219 - 476
Target Start/End: Complemental strand, 4366732 - 4366475
Alignment:
Q  219 taagaatattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgcca 318  Q
    |||||||||||| ||||| || |||||||| || || |||||| | || || |||||||||||||||||  || |||||||||||||||| |||||||||    
T  4366732 taagaatattaccgttgagcaatttgttattgtttcgcttgatctgggtacagagacatacaatcaatacttgctgcctcgtggttttgaagaagtgcca 4366633  T
Q  319 tctgcagaaccaaccgttggtgtgttggggggctgcctttgtttttcttatccttacaaagaaactgcttttgttatatggcagatgaagaaatttgggg 418  Q
     || | |||||||| |||||||||||||||| ||||||||||||||||||| |||||||  |||||| ||||||| ||||||||||||||||||| ||||    
T  4366632 cctactgaaccaacagttggtgtgttgggggactgcctttgtttttcttattcttacaagaaaactgattttgttttatggcagatgaagaaattcgggg 4366533  T
Q  419 atgaagattcttggtttcaattccttagaattagttatcaacatcttctaatagatta 476  Q
     |||||| ||||||  || ||| |||| | ||||||| ||  |||||| |||||||||    
T  4366532 ttgaagagtcttggactccatttcttaaagttagttaccagaatcttcaaatagatta 4366475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 224 - 480
Target Start/End: Complemental strand, 21855615 - 21855359
Alignment:
Q  224 atattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgc 323  Q
    ||||||| ||||| || ||||| || || ||||||||||| | |||||||||||||||||||||  |  |||||| ||||||||||||||| ||  |       
T  21855615 atattactgttgaccagtttgtgattgtttctcttgatttggagacggagacatacaatcaatacattatgcctcatggttttgatgaagttccgccgaa 21855516  T
Q  324 agaaccaaccgttggtgtgttggggggctgcctttgtttttcttatccttacaaagaaactgcttttgttatatggcagatgaagaaatttggggatgaa 423  Q
    ||| |||||  ||||||| ||| ||||||| ||||||||||| ||| | ||||| ||||| | ||||||||||||| |||||||| ||||||||| ||||    
T  21855515 agagccaactattggtgtattgaggggctgtctttgtttttcatattcgtacaaggaaaccgattttgttatatgggagatgaaggaatttggggttgaa 21855416  T
Q  424 gattcttggtttcaattccttagaattagttatcaacatcttctaatagattatgac 480  Q
    |||||||||  |||| |||||| | ||||||| ||  ||||||||||||||||||||    
T  21855415 gattcttggactcaactccttaaagttagttaccataatcttctaatagattatgac 21855359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 242 - 458
Target Start/End: Complemental strand, 39379275 - 39379059
Alignment:
Q  242 ttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgcagaaccaaccgttggtgt 341  Q
    ||||||| || || |||||||| ||||| || |||||||| || |||| ||||||| | ||||||||||| || || |||||||| ||||   |||||||    
T  39379275 ttgttattgtttcacttgatttggggactgaaacatacaaccagtatcggttgccttggggttttgatgaggttccgtctgcagagccaagttttggtgt 39379176  T
Q  342 gttggggggctgcctttgtttttcttatccttacaaagaaactgcttttgttatatggcagatgaagaaatttggggatgaagattcttggtttcaattc 441  Q
    |||||| | ||| |||||||||||||||  ||||| | |||||| |||| ||||||||||||||||| ||||||||| |||||| ||||||  ||||||     
T  39379175 gttgggtgactgtctttgtttttcttattgttacagaaaaactgattttattatatggcagatgaaggaatttggggttgaagagtcttggactcaattt 39379076  T
Q  442 cttagaattagttatca 458  Q
    |||| ||| ||||||||    
T  39379075 cttaaaatcagttatca 39379059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 232 - 477
Target Start/End: Complemental strand, 17560997 - 17560752
Alignment:
Q  232 gttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgcagaaccaa 331  Q
    |||||||| |||| ||| || || ||||||||  |||| |||||||||||| | ||  | |||||||||| |||||| || |||||| |   ||||||||    
T  17560997 gttgaacaatttggtattgtttcgcttgatttgaggactgagacatacaattagtacttattgcctcgtgattttgacgaggtgccaaccatagaaccaa 17560898  T
Q  332 ccgttggtgtgttggggggctgcctttgtttttcttatccttacaaagaaactgcttttgttatatggcagatgaagaaatttggggatgaagattcttg 431  Q
    |  ||||||||||||||| ||| |||||||||||||||  |||||| ||||  | ||| ||||||||||| |||||||||||||||| ||||||||||||    
T  17560897 cttttggtgtgttgggggactgtctttgtttttcttattgttacaaggaaatcgatttggttatatggcacatgaagaaatttggggttgaagattcttg 17560798  T
Q  432 gtttcaattccttagaattagttatcaacatcttctaatagattat 477  Q
    |   | |||||||| |||||||||| |  |||||| ||| ||||||    
T  17560797 gacaccattccttataattagttataacgatcttcaaattgattat 17560752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 243 - 456
Target Start/End: Original strand, 4570780 - 4570997
Alignment:
Q  243 tgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgcagaaccaaccgttggtgtg 342  Q
    |||||| || ||||||||||| | |||||||||||||||||||||  || ||||||||||  |||||||||||||  |     | || ||  ||||||||    
T  4570780 tgttattgtttctcttgatttggagacggagacatacaatcaatacatggtgcctcgtggggttgatgaagtgccgccgaactagcctactattggtgtg 4570879  T
Q  343 t----tggggggctgcctttgtttttcttatccttacaaagaaactgcttttgttatatggcagatgaagaaatttggggatgaagattcttggtttcaa 438  Q
    |    |||| ||||||||||||||||||||| |  |||  ||||||| ||||||||||||||| |||||||||||||||| |||||||||||||  ||||    
T  4570880 tgtgttgggaggctgcctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaa 4570979  T
Q  439 ttccttagaattagttat 456  Q
    || |||| ||||||||||    
T  4570980 ttgcttaaaattagttat 4570997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 232 - 480
Target Start/End: Original strand, 10218825 - 10219079
Alignment:
Q  232 gttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgcc--atctgcagaac- 328  Q
    |||||||| | |||||| || ||||||||||| | |||||||||||||||||||||  || ||||  ||||||||||| ||||| |  ||  | | |||     
T  10218825 gttgaacactctgttattgtttctcttgatttggagacggagacatacaatcaatacatggtgccctgtggttttgatcaagtgacgcattcgtacaaca 10218924  T
Q  329 ---caaccgttggtgtgttggggggctgcctttgtttttcttatccttacaaagaaactgcttttgttatatggcagatgaagaaatttggggatgaaga 425  Q
       ||||  |||||||||||||||| |||||||||||||||| |    |||| ||||||| ||||||| ||||||| |||||||||||||||  ||||||    
T  10218925 caccaactattggtgtgttggggggttgcctttgtttttcttttttgcacaaggaaactgattttgttgtatggcaaatgaagaaatttgggattgaaga 10219024  T
Q  426 ttcttggtttcaattccttagaattagttatcaacatcttctaatagattatgac 480  Q
    |||||||  |||||| |||| ||||||||| ||   ||||| ||||| |||||||    
T  10219025 ttcttggactcaattacttaaaattagttaccatactcttcgaataggttatgac 10219079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 389 - 478
Target Start/End: Complemental strand, 4015032 - 4014943
Alignment:
Q  389 ttgttatatggcagatgaagaaatttggggatgaagattcttggtttcaattccttagaattagttatcaacatcttctaatagattatg 478  Q
    |||||||||||||||||||||||||||||| |||||||||||||  ||||||||||| | ||||||| ||  ||||||||||||||||||    
T  4015032 ttgttatatggcagatgaagaaatttggggttgaagattcttggactcaattccttaaagttagttaccatgatcttctaatagattatg 4014943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 253 - 369
Target Start/End: Complemental strand, 4016974 - 4016859
Alignment:
Q  253 tctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgcc-atctgcagaaccaaccgttggtgtgttggggggc 351  Q
    ||||||||||| |||||||||||||||||||||||  || ||||||||||||||||| ||| |||  | | ||   |||||  || ||||||||||||||    
T  4016974 tctcttgattt-gggacggagacatacaatcaatacatggtgcctcgtggttttgataaagggccgctttaca-tgccaactattagtgtgttggggggc 4016877  T
Q  352 tgcctttgtttttcttat 369  Q
    ||||||||||||||||||    
T  4016876 tgcctttgtttttcttat 4016859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 227 - 480
Target Start/End: Original strand, 3625575 - 3625828
Alignment:
Q  227 ttacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgcaga 326  Q
    |||| ||||| || |||||||| || || |||||||| ||||| |||||||||||||| |||  | |||||||||| |||||| | |||||  ||  |||    
T  3625575 ttactgttgagcaatttgttattgtttcacttgatttggggactgagacatacaatcactattggctgcctcgtggatttgataaggtgcctcctataga 3625674  T
Q  327 accaaccgttggtgtgttggggggctgcctttgtttttcttatccttacaaagaaactgcttttgttatatggcagatgaagaaatttggggatgaagat 426  Q
    |||||  |||||||||||||||| ||||||||||||||||||| ||||||| | |||   | || |||||||||| |||||||||||||||| ||||||     
T  3625675 accaaatgttggtgtgttgggggactgcctttgtttttcttattcttacaaggtaacctatcttattatatggcaaatgaagaaatttggggttgaagag 3625774  T
Q  427 tcttggtttcaattccttagaattagttatcaacatcttctaatagattatgac 480  Q
    ||||||  |||||| |||| ||||||||||||| |||||| | |||||||||||    
T  3625775 tcttggactcaatttcttaaaattagttatcaaaatcttcaattagattatgac 3625828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 3e-43; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 227 - 480
Target Start/End: Complemental strand, 3561187 - 3560934
Alignment:
Q  227 ttacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgcaga 326  Q
    |||||||||| || |||||||| || || |||||| | || || |||||||||||||||||| |||||||||| ||||||||| | || ||  |||||||    
T  3561187 ttacagttgagcagtttgttattgtttcgcttgatctgggaactgagacatacaatcaatatttgttgcctcggggttttgataaggtaccgcctgcaga 3561088  T
Q  327 accaaccgttggtgtgttggggggctgcctttgtttttcttatccttacaaagaaactgcttttgttatatggcagatgaagaaatttggggatgaagat 426  Q
     || |   ||||||| |||||||  |||||||||||||||||| ||||||| ||||| | |||| |||| ||||||||||| |||||||||| ||||||     
T  3561087 gcctaatcttggtgtcttgggggattgcctttgtttttcttattcttacaaggaaaccgattttattatttggcagatgaaaaaatttggggttgaagag 3560988  T
Q  427 tcttggtttcaattccttagaattagttatcaacatcttctaatagattatgac 480  Q
    ||||||  |||||| |||| ||||||||||||  |||||| | |||||||||||    
T  3560987 tcttggactcaatttcttaaaattagttatcatgatcttcaattagattatgac 3560934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 242 - 458
Target Start/End: Original strand, 3557582 - 3557798
Alignment:
Q  242 ttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgcagaaccaaccgttggtgt 341  Q
    ||||||| || || |||||||| ||||| ||| ||||||| ||||||| ||||||||| |||||||||||  ||||  |||  || ||||||||||||||    
T  3557582 ttgttattgtttcacttgatttggggactgagtcatacaaccaatatcggttgcctcggggttttgatgagatgccgactgaggagccaaccgttggtgt 3557681  T
Q  342 gttggggggctgcctttgtttttcttatccttacaaagaaactgcttttgttatatggcagatgaagaaatttggggatgaagattcttggtttcaattc 441  Q
    |||| ||| ||| ||||||||||||||| ||||||| ||||| | |||| |||||||||| |||||| ||||||||| |||||| ||||||  ||||||     
T  3557682 gttgagggactgtctttgtttttcttattcttacaaggaaaccgattttattatatggcatatgaaggaatttggggttgaagagtcttggactcaattt 3557781  T
Q  442 cttagaattagttatca 458  Q
    |||| ||||||||||||    
T  3557782 cttaaaattagttatca 3557798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 224 - 458
Target Start/End: Original strand, 3565582 - 3565816
Alignment:
Q  224 atattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgc 323  Q
    ||||||| ||||| ||  ||||||| || || |||||||||||||| ||| ||||||| ||||||| ||||||||  ||||||||||| || ||  |||     
T  3565582 atattactgttgagcagattgttattgtttcacttgatttagggactgagtcatacaaacaatatcggttgcctctgggttttgatgaggttccgactga 3565681  T
Q  324 agaaccaaccgttggtgtgttggggggctgcctttgtttttcttatccttacaaagaaactgcttttgttatatggcagatgaagaaatttggggatgaa 423  Q
     || ||||| |||||||||||| ||| |||||||||||||||||||  ||| ||  |||| | |||| ||||||||||||||||| ||||||||| ||||    
T  3565682 ggagccaactgttggtgtgttgagggactgcctttgtttttcttattgttataagaaaaccgattttattatatggcagatgaaggaatttggggttgaa 3565781  T
Q  424 gattcttggtttcaattccttagaattagttatca 458  Q
    || ||||||  |||||| |||| ||||||||||||    
T  3565782 gagtcttggactcaatttcttaaaattagttatca 3565816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 224 - 374
Target Start/End: Complemental strand, 1686517 - 1686367
Alignment:
Q  224 atattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgc 323  Q
    ||||||| ||||||||  ||||||| || || ||| |||| ||||| ||||||||||||||||||| ||||||||  ||||||| ||| |||||   |      
T  1686517 atattactgttgaacagattgttattgtttcacttaatttggggactgagacatacaatcaatatcggttgcctcagggttttgctgaggtgccgcttat 1686418  T
Q  324 agaaccaaccgttggtgtgttggggggctgcctttgtttttcttatcctta 374  Q
    ||| ||||| |||||||||||||||| ||||||||||||||||||| ||||    
T  1686417 agagccaactgttggtgtgttgggggactgcctttgtttttcttattctta 1686367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 387 - 480
Target Start/End: Complemental strand, 53430168 - 53430075
Alignment:
Q  387 ttttgttatatggcagatgaagaaatttggggatgaagattcttggtttcaattccttagaattagttatcaacatcttctaatagattatgac 480  Q
    |||||| ||||||||||||||||||| |||||  ||||||||||||  ||||||||||| ||||||||| |||||||||| | |||| ||||||    
T  53430168 ttttgtcatatggcagatgaagaaatatggggccgaagattcttggactcaattccttaaaattagttaccaacatcttcaagtagactatgac 53430075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 356 - 458
Target Start/End: Original strand, 53774810 - 53774912
Alignment:
Q  356 tttgtttttcttatccttacaaagaaactgcttttgttatatggcagatgaagaaatttggggatgaagattcttggtttcaattccttagaattagtta 455  Q
    ||||||||||||||  ||  |||||||||  ||||||||||||||| |||||| ||||||| | |||||| ||||||  ||||||||||| |||||||||    
T  53774810 tttgtttttcttatgattttaaagaaactcattttgttatatggcaaatgaaggaatttggagttgaagagtcttggactcaattccttaaaattagtta 53774909  T
Q  456 tca 458  Q
    |||    
T  53774910 tca 53774912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 387 - 474
Target Start/End: Complemental strand, 11971051 - 11970964
Alignment:
Q  387 ttttgttatatggcagatgaagaaatttggggatgaagattcttggtttcaattccttagaattagttatcaacatcttctaatagat 474  Q
    ||||||||||||||| |||||| ||||||| |  ||||| ||||||  |||||| |||||||||||||||||  |||||| |||||||    
T  11971051 ttttgttatatggcaaatgaaggaatttggagtggaagagtcttggactcaatttcttagaattagttatcataatcttcaaatagat 11970964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 467
Target Start/End: Original strand, 35767019 - 35767099
Alignment:
Q  387 ttttgttatatggcagatgaagaaatttggggatgaagattcttggtttcaattccttagaattagttatcaacatcttct 467  Q
    ||||||||||||| ||||| |  ||||||| | |||||| |||||| ||||| |||||| |||||  |||||| |||||||    
T  35767019 ttttgttatatggaagatggaagaatttggagttgaagagtcttggattcaactccttaaaattaactatcaaaatcttct 35767099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 224 - 480
Target Start/End: Complemental strand, 24331131 - 24330875
Alignment:
Q  224 atattacagttgaacattttgttatcgtgtctcttgatttagggacggagacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgc 323  Q
    ||||||| ||||| || ||||| || || ||||||||||| | |||||||||||||||||||||  |  |||||| ||||||||||||||| ||  |       
T  24331131 atattactgttgaccagtttgtgattgtttctcttgatttggagacggagacatacaatcaatacattatgcctcatggttttgatgaagttccgccgaa 24331032  T
Q  324 agaaccaaccgttggtgtgttggggggctgcctttgtttttcttatccttacaaagaaactgcttttgttatatggcagatgaagaaatttggggatgaa 423  Q
    ||| |||||  ||||||| ||| ||||||| ||||||||||| ||| | ||||| ||||| | ||||||||||||| |||||||| ||||||||| ||||    
T  24331031 agagccaactattggtgtattgaggggctgtctttgtttttcatattcgtacaaggaaaccgattttgttatatgggagatgaaggaatttggggttgaa 24330932  T
Q  424 gattcttggtttcaattccttagaattagttatcaacatcttctaatagattatgac 480  Q
    |||||||||  |||| |||||| | ||||||| ||  ||||||||||||||||||||    
T  24330931 gattcttggactcaactccttaaagttagttaccataatcttctaatagattatgac 24330875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 464
Target Start/End: Complemental strand, 29597655 - 29597544
Alignment:
Q  353 gcctttgtttttcttatccttacaaagaaactgcttttgttatatggcagatgaagaaatttggggatgaagattcttggtttcaattccttagaattag 452  Q
    |||||||||||||| | | || ||| ||||||  ||||||||||||||| ||||   ||||||| | |||| | ||||||  ||||||||||| ||||||    
T  29597655 gcctttgtttttctcaccatttcaaggaaactcattttgttatatggcaaatgattgaatttggagttgaacaatcttggactcaattccttaaaattag 29597556  T
Q  453 ttatcaacatct 464  Q
    || |||| ||||    
T  29597555 ttttcaaaatct 29597544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 173 - 480
Target Start/End: Complemental strand, 14013 - 13706
Alignment:
Q  173 gcacttttaactggttggctatccacaatgaccttccctatcgtgttaagaatattacagttgaacattttgttatcgtgtctcttgatttagggacgga 272  Q
    ||||| |||| ||||||||| | ||||||||| ||  ||||  | |||||||| ||| |||||| || |||||||| || || || |||||  | || ||    
T  14013 gcactcttaattggttggctgttcacaatgactttgactatgatattaagaatcttaaagttgagcagtttgttattgtttcactcgatttgagaactga 13914  T
Q  273 gacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgcagaaccaaccgttggtgtgttggggggctgcctttgtttttcttatcct 372  Q
    |||||||||||| || |   ||||||||| |||| ||||| ||||||||||    ||||  |||| ||| |||||||||| |||||||| ||| |||  |    
T  13913 gacatacaatcagtaccgtctgcctcgtgattttcatgaaatgccatctgctctgccaattgttgctgtcttggggggcttcctttgttgttcctatttt 13814  T
Q  373 tacaaagaaactgcttttgttatatggcagatgaagaaatttggggatgaagattcttggtttcaattccttagaattagttatcaacatcttctaatag 472  Q
    ||||||||||| | |||| ||||||||||||||||| |||| ||  |||| || ||||||  ||| || |||| ||| || |||||| |||||| ||||     
T  13813 tacaaagaaaccgattttcttatatggcagatgaaggaattaggaaatgatgaatcttggactcagtttcttaaaataaggtatcaaaatcttcaaataa 13714  T
Q  473 attatgac 480  Q
    || |||||    
T  13713 atcatgac 13706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 173 - 480
Target Start/End: Complemental strand, 22848 - 22541
Alignment:
Q  173 gcacttttaactggttggctatccacaatgaccttccctatcgtgttaagaatattacagttgaacattttgttatcgtgtctcttgatttagggacgga 272  Q
    ||||| |||| ||||||||| | ||||||||| ||  ||||  | |||||||| ||| |||||| || |||||||| || || || |||||  | || ||    
T  22848 gcactcttaattggttggctgttcacaatgactttgactatgatattaagaatcttaaagttgagcagtttgttattgtttcactcgatttgagaactga 22749  T
Q  273 gacatacaatcaatatctgttgcctcgtggttttgatgaagtgccatctgcagaaccaaccgttggtgtgttggggggctgcctttgtttttcttatcct 372  Q
    |||||||||||| || |   ||||||||| |||| ||||| ||||||||||    ||||  |||| ||| |||||||||| |||||||| ||| |||  |    
T  22748 gacatacaatcagtaccgtctgcctcgtgattttcatgaaatgccatctgctctgccaattgttgctgtcttggggggcttcctttgttgttcctatttt 22649  T
Q  373 tacaaagaaactgcttttgttatatggcagatgaagaaatttggggatgaagattcttggtttcaattccttagaattagttatcaacatcttctaatag 472  Q
    ||||||||||| | |||| ||||||||||||||||| |||| ||  |||| || ||||||  ||| || |||| ||| || |||||| |||||| ||||     
T  22648 tacaaagaaaccgattttcttatatggcagatgaaggaattaggaaatgatgaatcttggactcagtttcttaaaataaggtatcaaaatcttcaaataa 22549  T
Q  473 attatgac 480  Q
    || |||||    
T  22548 atcatgac 22541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 387 - 474
Target Start/End: Original strand, 20770651 - 20770738
Alignment:
Q  387 ttttgttatatggcagatgaagaaatttggggatgaagattcttggtttcaattccttagaattagttatcaacatcttctaatagat 474  Q
    ||||||||||||||| |||||| |||||||   |||||| || ||| |||||||||||| ||||||||||||  |||||| |||||||    
T  20770651 ttttgttatatggcaaatgaaggaatttggaattgaagagtcatggattcaattccttaaaattagttatcataatcttcaaatagat 20770738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 387 - 456
Target Start/End: Complemental strand, 6921419 - 6921350
Alignment:
Q  387 ttttgttatatggcagatgaagaaatttggggatgaagattcttggtttcaattccttagaattagttat 456  Q
    ||||||||| ||||| |||||| ||||||| | |||||| ||||||  ||||||||||| ||||||||||    
T  6921419 ttttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttat 6921350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 456
Target Start/End: Complemental strand, 6947948 - 6947880
Alignment:
Q  388 tttgttatatggcagatgaagaaatttggggatgaagattcttggtttcaattccttagaattagttat 456  Q
    |||||| | ||||| |||||| ||||||| | |||||| ||||||  ||||||||||| ||||||||||    
T  6947948 tttgttctttggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttat 6947880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 397 - 477
Target Start/End: Original strand, 17369675 - 17369755
Alignment:
Q  397 tggcagatgaagaaatttggggatgaagattcttggtttcaattccttagaattagttatcaacatcttctaatagattat 477  Q
    ||||| |||||| ||||||| | |||||| ||||||  |||||| |||| ||||||||||||  |||||| ||||| ||||    
T  17369675 tggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttatcagaatcttcaaatagcttat 17369755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 463
Target Start/End: Original strand, 20975559 - 20975635
Alignment:
Q  387 ttttgttatatggcagatgaagaaatttggggatgaagattcttggtttcaattccttagaattagttatcaacatc 463  Q
    ||||||||||||||| |||| | ||||||| | ||||||||||||| |||||||  ||| | |||| ||||||||||    
T  20975559 ttttgttatatggcaaatgagggaatttggagttgaagattcttggattcaattgtttaaatttaggtatcaacatc 20975635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 477
Target Start/End: Original strand, 14514903 - 14514991
Alignment:
Q  389 ttgttatatggcagatgaagaaatttggggatgaagattcttggtttcaattccttagaattagttatcaacatcttctaatagattat 477  Q
    ||||||||||| | ||| |  ||||||| | |||||||||||||  ||||||||||| ||||||||||    |||||| ||||||||||    
T  14514903 ttgttatatggaaaatggatgaatttggagttgaagattcttggactcaattccttaaaattagttatatgaatcttcaaatagattat 14514991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 483
Target Start/End: Complemental strand, 18908878 - 18908782
Alignment:
Q  387 ttttgttatatggcagatgaagaaatttggggatgaagattcttggtttcaattccttagaattagttatcaacatcttctaatagattatgacatt 483  Q
    ||||||||||||| |||||| | ||||||| | | |||| ||||||  ||||||||| | |||||||| |||| ||||||  || ||||||| ||||    
T  18908878 ttttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttcatattgattatggcatt 18908782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 483
Target Start/End: Complemental strand, 18913626 - 18913530
Alignment:
Q  387 ttttgttatatggcagatgaagaaatttggggatgaagattcttggtttcaattccttagaattagttatcaacatcttctaatagattatgacatt 483  Q
    ||||||||||||| |||||| | ||||||| | | |||| ||||||  ||||||||| | |||||||| |||| ||||||  || ||||||| ||||    
T  18913626 ttttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttcatattgattatggcatt 18913530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 483
Target Start/End: Complemental strand, 18920834 - 18920738
Alignment:
Q  387 ttttgttatatggcagatgaagaaatttggggatgaagattcttggtttcaattccttagaattagttatcaacatcttctaatagattatgacatt 483  Q
    ||||||||||||| |||||| | ||||||| | | |||| ||||||  ||||||||| | |||||||| |||| ||||||  || ||||||| ||||    
T  18920834 ttttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttcaaaatcttcatattgattatggcatt 18920738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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