View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18628_low_3 (Length: 419)
Name: NF18628_low_3
Description: NF18628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18628_low_3 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 9 - 419
Target Start/End: Original strand, 46642019 - 46642427
Alignment:
| Q |
9 |
gagaagaaaattaatggtgcaaattatgtcactgcagaagatgggagagatttccaccggaggaaatccacatgcacgaaatccatgaaggataccacct |
108 |
Q |
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| T |
46642019 |
gagaagataattaatggtgtaaattatgtcactgcagaggattggagagatttccaccgaaggaaatccacatgcacgaaatccatgaaggataccactt |
46642118 |
T |
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| Q |
109 |
aaaaatgtgaatattttcatttgttaagattaattacctaccattcttttatggataacctatatgtcacaccatttaaatgtctaaccaaaccaattac |
208 |
Q |
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| T |
46642119 |
aaaaatgtgaatattt--attcgttagtataaattacctactattcttttataggtaacctagatgtcacaccatttaaacgtctaaccaaaccaattac |
46642216 |
T |
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| Q |
209 |
attattattttataagagtaatgtcaatttgcagcacaacaaacactaacttccaatatttctccaacatacacacatttatataaattcgcattcccat |
308 |
Q |
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| T |
46642217 |
attattattttataagagtaacgtcaatttgcagcacaacaaacactaacttccaatatttctccaacatacacacatttatataaattcacattcccat |
46642316 |
T |
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| Q |
309 |
aacacaaaatcaaacccatccattatcagtaatggaatcctcttatagtctacaattcttaattaccttcattgtcattctcatatccatcaacccctca |
408 |
Q |
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| T |
46642317 |
aacacaaaatcaaacccatccattatcggtaatggaatcctcttatagtccaaaactcttaatttccttcattgtcattctcatatccatcaacccctca |
46642416 |
T |
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| Q |
409 |
tcacaccaatc |
419 |
Q |
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| T |
46642417 |
tcacaccaatc |
46642427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 183 - 419
Target Start/End: Original strand, 46639893 - 46640135
Alignment:
| Q |
183 |
tttaaatgtctaaccaaaccaattac---attattattttataagagtaatgtcaatttgcagcacaacaaacactaacttccaatatttctccaacata |
279 |
Q |
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| T |
46639893 |
tttaaatgtctaaccaaaccaatcactctattattattttataagagtaatgtcaatttgcagcacaacaaacagaaacttccaaaatttctccaacata |
46639992 |
T |
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| Q |
280 |
cacacat---ttatataaattcgcattcccataacacaaaatcaaacccatccattatcagtaatggaatcctcttatagtctacaattcttaattacct |
376 |
Q |
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| T |
46639993 |
cacacaccccttatataaattcacattcccataacacaaaatcaaacccatccattatcagtaatggaatcctcttatagtctacaattcttaattacct |
46640092 |
T |
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| Q |
377 |
tcattgtcattctcatatccatcaacccctcatcacaccaatc |
419 |
Q |
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| T |
46640093 |
tcattgtcattctcatatccatcaacccctcatcacaccaatc |
46640135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 29966102 - 29966171
Alignment:
| Q |
9 |
gagaagaaaattaatggtgcaaattatgtcactgcagaagatgggagagatttccaccggaggaaatcca |
78 |
Q |
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| T |
29966102 |
gagaagacaattaatggtgcagattgtatcactgcagaaaactggagagattttcacaggaggaaatcca |
29966171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 30008696 - 30008627
Alignment:
| Q |
9 |
gagaagaaaattaatggtgcaaattatgtcactgcagaagatgggagagatttccaccggaggaaatcca |
78 |
Q |
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| T |
30008696 |
gagaagacaattaatggtgcagattgtatcactgcagaaaactggagagattttcacaggaggaaatcca |
30008627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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