View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18628_low_4 (Length: 408)
Name: NF18628_low_4
Description: NF18628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18628_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 110; Significance: 3e-55; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 282 - 391
Target Start/End: Original strand, 41440599 - 41440708
Alignment:
| Q |
282 |
gtgttattaggtttctccttagactcattcacaacaaaagttgtaaattttctccaaacccatgaaactaaaactgcaagaatcaatagtatatgaatta |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41440599 |
gtgttattaggtttctccttagactcattcacaacaaaagttgtaaattttctccaaacccatgaaactaaaactgcaagaatcaatagtatatgaatta |
41440698 |
T |
|
| Q |
382 |
agctagatat |
391 |
Q |
| |
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|||||||||| |
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| T |
41440699 |
agctagatat |
41440708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 63 - 202
Target Start/End: Original strand, 41453543 - 41453682
Alignment:
| Q |
63 |
cttctttttctttgacttgaactggagaaaaacaagacccctttgtggaaacaaacacaaagaacacaccaagctactgtttttaaagctaaatcaaaaa |
162 |
Q |
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|||||||||||||||| ||||||| |||||||||| | |||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
41453543 |
cttctttttctttgacctgaactgaagaaaaacaaaaaccctttgtagaaacaaacacaaacaacacaccaagcaactgtttttaaagctaaatcaaaaa |
41453642 |
T |
|
| Q |
163 |
gagtaataaccttttcttctgaccaaccacttgcatacca |
202 |
Q |
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|||||| |||||||||||||||||||||||| | |||||| |
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| T |
41453643 |
gagtaacaaccttttcttctgaccaaccactagtatacca |
41453682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 63 - 204
Target Start/End: Original strand, 41440380 - 41440521
Alignment:
| Q |
63 |
cttctttttctttgacttgaactggagaaaaacaagacccctttgtggaaacaaacacaaagaacacaccaagctactgtttttaaagctaaatcaaaaa |
162 |
Q |
| |
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|||||| |||||||| ||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||| |||| |
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| T |
41440380 |
cttcttcttctttgatctgaactgaagaaaaacaagaaccctttgtggaaacaaacacaaacaacacaccaagcaactgtttttaatactaaatctaaaa |
41440479 |
T |
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| Q |
163 |
gagtaataaccttttcttctgaccaaccacttgcataccagt |
204 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||| |
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| T |
41440480 |
ttgtaacaaccttttcttctgaccaaccacttgcataccagt |
41440521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 282 - 391
Target Start/End: Original strand, 41453762 - 41453865
Alignment:
| Q |
282 |
gtgttattaggtttctccttagactcattcacaacaaaagttgtaaattttctccaaacccatgaaactaaaactgcaagaatcaatagtatatgaatta |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||| |
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| T |
41453762 |
gtgttattaggtttctccttagactcattcacaac------tgtaaattttctccaaaccgatgaaactaaaattgcaataatcaatagtatatgaatta |
41453855 |
T |
|
| Q |
382 |
agctagatat |
391 |
Q |
| |
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|||||||||| |
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| T |
41453856 |
agctagatat |
41453865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 64 - 204
Target Start/End: Complemental strand, 14370798 - 14370658
Alignment:
| Q |
64 |
ttctttttctttgacttgaactggagaaaaacaagacccctttgtggaaacaaacacaaagaacacaccaagctactgtttttaaagctaaatcaaaaag |
163 |
Q |
| |
|
||||||||||||||| | ||||| |||||||||||| |||||| |||||||||||| ||||||| |||||| |||||||| | ||||||||||||||| |
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| T |
14370798 |
ttctttttctttgacctaaactgaagaaaaacaagaaccctttctggaaacaaacaaaaagaacgaaccaagtaactgttttgagagctaaatcaaaaag |
14370699 |
T |
|
| Q |
164 |
agtaataaccttttcttctgaccaaccacttgcataccagt |
204 |
Q |
| |
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|||| | | ||||||||||||||| |||||| |||||||| |
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| T |
14370698 |
ggtaacagctttttcttctgaccaatcacttgtataccagt |
14370658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 64 - 204
Target Start/End: Original strand, 14242523 - 14242663
Alignment:
| Q |
64 |
ttctttttctttgacttgaactggagaaaaacaagacccctttgtggaaacaaacacaaagaacacaccaagctactgtttttaaagctaaatcaaaaag |
163 |
Q |
| |
|
||||||||||||||| ||| || ||||||| |||| ||||||||||||||||||| ||| |||| |||||| |||||||| | ||||||||||||||| |
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| T |
14242523 |
ttctttttctttgacctgagctcaagaaaaagaagaaccctttgtggaaacaaacaaaaacaacaaaccaagtaactgttttgagagctaaatcaaaaag |
14242622 |
T |
|
| Q |
164 |
agtaataaccttttcttctgaccaaccacttgcataccagt |
204 |
Q |
| |
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|||| ||| ||||| |||||||||||| || |||||||| |
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| T |
14242623 |
ggtaacaactttttcatctgaccaaccatttctataccagt |
14242663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 286 - 390
Target Start/End: Complemental strand, 14370591 - 14370487
Alignment:
| Q |
286 |
tattaggtttctccttagactcattcacaacaaaagttgtaaattttctccaaacccatgaaactaaaactgcaagaatcaatagtatatgaattaagct |
385 |
Q |
| |
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|||||||| |||||||| ||||||| |||||| ||||||| | |||| ||||||||||||| | |||||| || | || |||||||||||||| || ||| |
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| T |
14370591 |
tattaggtgtctccttaaactcattgacaacacaagttgtgatttttttccaaacccatgagattaaaaccgccacaagcaatagtatatgaagtatgct |
14370492 |
T |
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| Q |
386 |
agata |
390 |
Q |
| |
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||||| |
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| T |
14370491 |
agata |
14370487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 295 - 390
Target Start/End: Original strand, 14242757 - 14242852
Alignment:
| Q |
295 |
tctccttagactcattcacaacaaaagttgtaaattttctccaaacccatgaaactaaaactgcaagaatcaatagtatatgaattaagctagata |
390 |
Q |
| |
|
|||||||| ||||||| | |||| ||||||| | |||| ||||||||||||| |||||||| | || || ||| |||| |||||||||| |||||| |
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| T |
14242757 |
tctccttacactcattgataacacaagttgtgatttttttccaaacccatgagactaaaaccgaaacaagcaacagtacatgaattaaggtagata |
14242852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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