View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18628_low_6 (Length: 380)
Name: NF18628_low_6
Description: NF18628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18628_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 15 - 370
Target Start/End: Complemental strand, 14845198 - 14844835
Alignment:
| Q |
15 |
tataattactatcacatgctaatttcttatatatgtcattgtttcaacaatattcacctatcaaagatgtgt------------accaacacatatgatt |
102 |
Q |
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| T |
14845198 |
tataattactatcacatgctaatttcttatatatgtcattgtttgaacaatattcacctatcaaagatgtgtctggtattcaacaccaacacatatgact |
14845099 |
T |
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| Q |
103 |
atgtttaatcatttcttttttgtatatnnnnnnnnntattgttgatgtatacgtgtcaatgtcaatgtttcatacgacttcatgtacactatctttgtcg |
202 |
Q |
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| T |
14845098 |
atgtttaattatttcttttttgtatataaaaaaaaa-attgttgatgtatacgtgtcaatgtcaatgtttcatacgacttcatgtacactatctttgtcg |
14845000 |
T |
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| Q |
203 |
aacatgataagtgtttttgtaatcatatccaccgaacagaaactggtttactattttttgttcaacaattgcttagccatactgtagctgtaaatatacc |
302 |
Q |
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| T |
14844999 |
aacat---aagtgtttttgtaatcatatccaccgaacagaaactggtttactattttttgttcaacaattgcttagccatactgtagctgtaaatatacc |
14844903 |
T |
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| Q |
303 |
ttaaaaatatataatgaaaggtcattttgaagcaaaatcaataatggaagatagtgtataaaaaacat |
370 |
Q |
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| T |
14844902 |
ttaaaaatatataatgaaaggtcattttgaagcaaaatcaataatggaagatagtgtataaaaaacat |
14844835 |
T |
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