View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18628_low_7 (Length: 349)
Name: NF18628_low_7
Description: NF18628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18628_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 27744972 - 27745301
Alignment:
| Q |
1 |
tattcaattcatttgtcccacctaatggaatgatcaaatctgtagctatctatccaactgagtttggccttcaacgtttgaaagaggagaatattcatgg |
100 |
Q |
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| T |
27744972 |
tattcaattcatttgtcccacctaatggaatgatcaaatctgtagctatctatccaactgagtttggccttcaacgtttgaaagaggagaatattcatgg |
27745071 |
T |
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| Q |
101 |
acctgttctatttcacaatgaaaatgatataagtgatgaagatatcaatgagaatatgcgtgcctatcagaagagcatgatgcggtatatataataacca |
200 |
Q |
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| T |
27745072 |
acctgttctatttcacaatgaaaatgatataagtgatgaagatatcaatgagaatatgcgtgcctatcagaagagcatgatgcggtatatataataacca |
27745171 |
T |
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| Q |
201 |
taaaactgacttgttccgtgacacattggcctgaatggcatatagataaagctcttcgatttgatttcagcttgaatattcaagcataactttataataa |
300 |
Q |
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| T |
27745172 |
taaaactgacttgtgccgtgacacattggcctgaatggcatatagataaagctcttcaatttgatttcagcttgaa---tcaagcataactttataataa |
27745268 |
T |
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| Q |
301 |
taataattttatcagtttcatagtgcttcttac |
333 |
Q |
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| T |
27745269 |
taataattttatcagtttcatagtgcttcttac |
27745301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 38529472 - 38529391
Alignment:
| Q |
8 |
ttcatttgtcccacctaatggaatgatcaaatctgtagctatctatccaactgagtttggccttcaacgtttgaaagaggag |
89 |
Q |
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|||||| | |||| ||| |||| |||||||||| ||| |||| |||||||| |||||||||||||||||| |||| |||||| |
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| T |
38529472 |
ttcattagccccaactagtggactgatcaaatcggtaactatttatccaaccgagtttggccttcaacgtatgaatgaggag |
38529391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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