View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18628_low_9 (Length: 297)
Name: NF18628_low_9
Description: NF18628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18628_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 16 - 278
Target Start/End: Complemental strand, 4705508 - 4705246
Alignment:
| Q |
16 |
atattcgccacaaactagaacagtgattataagcttaccgggtgccaagattcatcattttcaacatggccatggttttgatgatgtgttctatgactaa |
115 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
4705508 |
atattcgccataaactagaacagtgattataagcttaccgggtgccaagattcatcattttcaacatggccatggttttgatgatgtgttctatgactga |
4705409 |
T |
|
| Q |
116 |
ttctcctgcacaatgcataaaactcagtttcaaaacttacacaaaaacaaatgcagattaagataacaaataagtataacaagactagaaaaacagctat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4705408 |
ttctcctgcacaatgcataaaactcagtttcaaaacttacacaaaaacaaatgcagattaagataacaaataagtataacaagactagaaaaacagctat |
4705309 |
T |
|
| Q |
216 |
tcctacataaacataccatccatgatatggtactaggattgatgaatgcagcaaatgccccgc |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4705308 |
tcctacataaacataccatccatgatatggtactaggattgatgaatgcagcaaatgccccgc |
4705246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 123
Target Start/End: Original strand, 25840461 - 25840520
Alignment:
| Q |
64 |
gattcatcattttcaacatggccatggttttgatgatgtgttctatgactaattctcctg |
123 |
Q |
| |
|
|||||||| || |||||||| ||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
25840461 |
gattcatctttctcaacatgaccatggttttgatgatgagttctatgactgattctcctg |
25840520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 123
Target Start/End: Original strand, 25268438 - 25268509
Alignment:
| Q |
52 |
accgggtgccaagattcatcattttcaacatggccatggttttgatgatgtgttctatgactaattctcctg |
123 |
Q |
| |
|
||||| |||||||| || |||||||||||||||||||| || || ||||| || ||||||||||| |||||| |
|
|
| T |
25268438 |
accggatgccaagactcgtcattttcaacatggccatgattctggtgatgagtcctatgactaatcctcctg |
25268509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 30186550 - 30186599
Alignment:
| Q |
74 |
tttcaacatggccatggttttgatgatgtgttctatgactaattctcctg |
123 |
Q |
| |
|
||||||||| ||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
30186550 |
tttcaacatttccatggttttgatgatgtgttttgtgactaattctcctg |
30186599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University