View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18629_high_1 (Length: 1032)

Name: NF18629_high_1
Description: NF18629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18629_high_1
NF18629_high_1
[»] chr3 (28 HSPs)
chr3 (8-1014)||(47248796-47249800)
chr3 (23-253)||(47242366-47242596)
chr3 (352-459)||(47253966-47254073)
chr3 (924-1014)||(47242881-47242971)
chr3 (366-454)||(47242723-47242811)
chr3 (936-995)||(47254150-47254209)
chr3 (678-752)||(21367685-21367759)
chr3 (618-752)||(34610724-34610858)
chr3 (801-873)||(35959585-35959657)
chr3 (678-752)||(37389201-37389275)
chr3 (619-735)||(26878235-26878351)
chr3 (686-737)||(3194250-3194301)
chr3 (796-871)||(44747516-44747591)
chr3 (504-578)||(24778609-24778682)
chr3 (631-751)||(46778122-46778241)
chr3 (503-579)||(48532165-48532241)
chr3 (696-755)||(31403373-31403432)
chr3 (705-752)||(33883755-33883802)
chr3 (619-752)||(38902084-38902216)
chr3 (504-579)||(40991639-40991713)
chr3 (934-981)||(47265980-47266027)
chr3 (685-751)||(402527-402593)
chr3 (670-752)||(2719486-2719568)
chr3 (788-850)||(28240228-28240290)
chr3 (697-751)||(46031009-46031063)
chr3 (799-848)||(12704123-12704172)
chr3 (818-871)||(30956772-30956825)
chr3 (818-871)||(30972584-30972637)
[»] chr2 (30 HSPs)
chr2 (612-753)||(7928210-7928352)
chr2 (803-878)||(9395004-9395079)
chr2 (686-752)||(4606943-4607009)
chr2 (619-752)||(26143561-26143692)
chr2 (688-752)||(3611244-3611308)
chr2 (670-752)||(750688-750770)
chr2 (678-752)||(16451136-16451210)
chr2 (782-878)||(43570290-43570384)
chr2 (680-750)||(36043924-36043994)
chr2 (613-746)||(15305698-15305831)
chr2 (786-871)||(28792314-28792399)
chr2 (801-878)||(41407165-41407242)
chr2 (670-739)||(44606081-44606149)
chr2 (635-751)||(7035502-7035618)
chr2 (678-738)||(28677638-28677697)
chr2 (704-752)||(35379020-35379068)
chr2 (695-739)||(40682390-40682434)
chr2 (678-738)||(43570446-43570505)
chr2 (685-752)||(40279285-40279352)
chr2 (685-752)||(40279355-40279422)
chr2 (678-752)||(8017452-8017525)
chr2 (789-871)||(9174695-9174777)
chr2 (688-738)||(9174847-9174897)
chr2 (695-752)||(1625918-1625975)
chr2 (818-871)||(15757812-15757865)
chr2 (613-746)||(26202052-26202185)
chr2 (804-869)||(26626759-26626824)
chr2 (695-752)||(26626891-26626948)
chr2 (695-752)||(29316771-29316827)
chr2 (689-738)||(41809235-41809283)
[»] chr4 (19 HSPs)
chr4 (797-871)||(44863077-44863151)
chr4 (619-712)||(55437134-55437227)
chr4 (685-752)||(17822850-17822917)
chr4 (503-610)||(22420716-22420822)
chr4 (621-752)||(52315118-52315249)
chr4 (619-751)||(27043749-27043881)
chr4 (789-869)||(44138442-44138522)
chr4 (788-848)||(23277317-23277377)
chr4 (687-739)||(25332806-25332858)
chr4 (503-579)||(25575032-25575107)
chr4 (530-609)||(29209201-29209279)
chr4 (796-851)||(42641747-42641802)
chr4 (670-752)||(13126546-13126628)
chr4 (718-752)||(16199999-16200033)
chr4 (694-752)||(42685442-42685499)
chr4 (499-548)||(15665339-15665388)
chr4 (678-738)||(28615366-28615426)
chr4 (828-873)||(42404138-42404183)
chr4 (503-548)||(48174092-48174137)
[»] chr7 (22 HSPs)
chr7 (782-871)||(46139823-46139912)
chr7 (672-721)||(7241308-7241357)
chr7 (669-752)||(7244698-7244780)
chr7 (677-752)||(34035935-34036010)
chr7 (801-871)||(33128628-33128698)
chr7 (668-734)||(36537944-36538009)
chr7 (670-739)||(20526899-20526968)
chr7 (677-737)||(15740389-15740448)
chr7 (668-752)||(19022553-19022637)
chr7 (796-856)||(19718903-19718963)
chr7 (803-872)||(20428335-20428406)
chr7 (796-868)||(33552935-33553007)
chr7 (696-752)||(46139950-46140006)
chr7 (796-876)||(47795833-47795913)
chr7 (503-577)||(1011256-1011329)
chr7 (801-871)||(9210499-9210569)
chr7 (670-752)||(20526464-20526546)
chr7 (532-610)||(22174177-22174254)
chr7 (678-752)||(33678798-33678872)
chr7 (503-609)||(40008430-40008535)
chr7 (818-871)||(38138625-38138678)
chr7 (705-746)||(47559606-47559647)
[»] chr5 (21 HSPs)
chr5 (801-872)||(24030531-24030602)
chr5 (685-752)||(39105482-39105549)
chr5 (678-752)||(1464998-1465072)
chr5 (614-751)||(10639972-10640109)
chr5 (695-748)||(42099867-42099920)
chr5 (685-752)||(12459987-12460053)
chr5 (797-871)||(28776856-28776930)
chr5 (696-748)||(40848767-40848819)
chr5 (817-876)||(3520297-3520356)
chr5 (615-752)||(11700181-11700317)
chr5 (818-871)||(32372495-32372548)
chr5 (796-876)||(9202862-9202942)
chr5 (705-752)||(4014429-4014476)
chr5 (695-750)||(9202743-9202798)
chr5 (609-647)||(43301001-43301039)
chr5 (703-752)||(7319011-7319060)
chr5 (699-752)||(7984987-7985040)
chr5 (818-871)||(13697905-13697958)
chr5 (801-874)||(26005367-26005440)
chr5 (818-871)||(40426633-40426686)
chr5 (788-876)||(42100195-42100286)
[»] chr1 (33 HSPs)
chr1 (697-752)||(38503462-38503517)
chr1 (670-744)||(3887602-3887676)
chr1 (694-752)||(15784347-15784405)
chr1 (671-752)||(7136970-7137050)
chr1 (668-739)||(47498807-47498878)
chr1 (672-750)||(27145708-27145785)
chr1 (797-871)||(45975571-45975645)
chr1 (796-871)||(5894277-5894352)
chr1 (694-752)||(7069319-7069377)
chr1 (670-752)||(51695465-51695547)
chr1 (669-750)||(37473423-37473504)
chr1 (670-734)||(4481966-4482029)
chr1 (803-871)||(5720852-5720920)
chr1 (514-610)||(30396739-30396834)
chr1 (803-871)||(41195325-41195393)
chr1 (705-756)||(15361054-15361105)
chr1 (551-610)||(15577595-15577654)
chr1 (695-750)||(38116073-38116128)
chr1 (788-851)||(38116291-38116354)
chr1 (828-871)||(46423151-46423194)
chr1 (621-751)||(1432534-1432664)
chr1 (678-752)||(3233993-3234067)
chr1 (695-749)||(5886990-5887043)
chr1 (626-752)||(6102172-6102297)
chr1 (504-578)||(21769711-21769784)
chr1 (796-870)||(27146362-27146436)
chr1 (694-752)||(46252677-46252734)
chr1 (797-871)||(47498958-47499032)
chr1 (695-752)||(27820332-27820389)
chr1 (514-579)||(29128991-29129056)
chr1 (707-752)||(34290254-34290299)
chr1 (798-851)||(37841899-37841952)
chr1 (818-871)||(43990119-43990172)
[»] chr8 (15 HSPs)
chr8 (678-736)||(32840964-32841022)
chr8 (668-739)||(33808334-33808405)
chr8 (671-751)||(9956785-9956865)
chr8 (695-750)||(3536940-3536995)
chr8 (612-750)||(1057989-1058126)
chr8 (701-751)||(1113077-1113127)
chr8 (678-752)||(43504769-43504842)
chr8 (668-721)||(779030-779082)
chr8 (670-751)||(10120775-10120856)
chr8 (612-752)||(30251366-30251506)
chr8 (612-739)||(10758169-10758296)
chr8 (504-579)||(45419443-45419517)
chr8 (818-876)||(40980996-40981054)
chr8 (800-870)||(41475178-41475248)
chr8 (515-608)||(23492213-23492305)
[»] chr6 (14 HSPs)
chr6 (801-871)||(6538388-6538458)
chr6 (672-749)||(2455280-2455357)
chr6 (670-739)||(2735100-2735169)
chr6 (678-751)||(9912169-9912242)
chr6 (551-609)||(3963967-3964025)
chr6 (678-736)||(33832252-33832309)
chr6 (668-746)||(34910377-34910455)
chr6 (796-876)||(264247-264327)
chr6 (677-737)||(1575928-1575987)
chr6 (677-753)||(31624107-31624182)
chr6 (788-876)||(35069428-35069516)
chr6 (696-739)||(34882417-34882460)
chr6 (678-752)||(31813179-31813253)
chr6 (612-657)||(35069524-35069569)
[»] scaffold0608 (1 HSPs)
scaffold0608 (670-734)||(9608-9671)
[»] scaffold0699 (1 HSPs)
scaffold0699 (821-871)||(6785-6835)
[»] scaffold0018 (1 HSPs)
scaffold0018 (813-871)||(157978-158036)


Alignment Details
Target: chr3 (Bit Score: 947; Significance: 0; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 947; E-Value: 0
Query Start/End: Original strand, 8 - 1014
Target Start/End: Original strand, 47248796 - 47249800
Alignment:
Q  8 gacatcatcaactaatagtaataaaacaatatttcaactaacctttcgattctcacaagcaatcccaataaacctcctgaaagggaaacataacagttgc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47248796 gacatcatcaactaatagtaataaaacaatatttcaactaacctttcgattctcacaagcaatcccaataaacctcctgaaagggaaacataacagttgc 47248895  T
Q  108 acataaacatggtcagtccaattatttcatttcagcaaggatttatatattcaactttacagtaaaaaatgtccttacttaagaaatgttatcacattag 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  47248896 acataaacatggtcagtccaattatttcatttcagcaaggatttatatattcaactttacagtaataaatgtccttacttaagaaatgttatcacattag 47248995  T
Q  208 ggttgcccatttcaaagtttagggacttaagtatgtcagcttccatttttaatacctacggtagcaggaagacaacaacatacatgagaaacaaagcaac 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47248996 ggttgcccatttcaaagtttagggacttaagtatgtcagcttccatttttaatacctacggtagcaggaagacaacaacatacatgagaaacaaagcaac 47249095  T
Q  308 acagtaagaaatgaaatgtacaaattttgattcaagagcaatgacatgaataggatatttacctcttccaggtcataggtgttatcagtaatttggcaga 407  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47249096 acagtaagaaataaaatgtacaaattttgattcaagagcaatgacatgaataggatatttacctcttccaggtcataggtgttatcagtaatttggcaga 47249195  T
Q  408 aatccactgcctttggtggggtaatttcttcatactttctgcatatttaaaagagataaatttaaatgcttaagcaaaatgacatagcaacaactaacaa 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47249196 aatccactgcctttggtggggtaatttcttcatactttctgcatatttaaaagagataaatttaaatgcttaagcaaaatgacatagcaacaactaacaa 47249295  T
Q  508 caaccgccaagcctcatcacactaagtggggtctgctacatttgatcaaacaacaccaaaatgttctatcatctatcttatctctatcaaattcattaat 607  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  47249296 caaccgccaagcctcatcacactaagtggggtctgctaca-ttgatcaaacaataccaaaatgttctatcatccatcttatctctatcaaattcattaat 47249394  T
Q  608 ctccaagggcatgtttgtattgtcttatttgagcttatatgctgacataaattaattgaaattgtttgaaagaactgatgaaaaccacttatgacattgt 707  Q
    ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||    
T  47249395 ctctaagggcatgtttgtattggcttatttgagcttatatgctgacataaattaattgaaattgtttgaaagaacttatgaaaaccacttatgaca-tgt 47249493  T
Q  708 tcataagttgtttttggcttattttcataagtcctccaagatagccaatacaaaaataatttaatttcactttatatatgttgctattgaaatagcttat 807  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47249494 tcataagttgtttttggcttattttcataagtcctccaagatagccaatacaaaaataatttaatttcactttatatatgttgctattgaaatagcttat 47249593  T
Q  808 acatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaacaaggccaagatttttgtaaaaatacataacaacattt 907  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  47249594 acatgagcatttatcatgataagtgcttgtgttataagctgcaaataagctatttatccacacaaggcctagatttttgtaaaaatacataacaacattt 47249693  T
Q  908 gtaagaatataaaaacagttgttgagggcttacgatgcaatgagcatggatgaaacaccgagcaactgaagcttagatctgctgacaggttcaatagata 1007  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47249694 gtaagaatataaaaacagttgttgagggcttacgatgcaatgagcatggatgaaacaccgagcaactgaagcttagatctgctgacaggttcaatagata 47249793  T
Q  1008 agaatct 1014  Q
    |||||||    
T  47249794 agaatct 47249800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 23 - 253
Target Start/End: Original strand, 47242366 - 47242596
Alignment:
Q  23 tagtaataaaacaatatttcaactaacctttcgattctcacaagcaatcccaataaacctcctgaaagggaaacataacagttgcacataaacatggtca 122  Q
    |||||||||||||| | ||||| | |||||| |||||||| |||||||||||| ||| ||||||||| | || || | ||  || | |||||||   | |    
T  47242366 tagtaataaaacaacaattcaaattaccttttgattctcagaagcaatcccaacaaaactcctgaaatg-aatcacagcaagtgaaaataaacagaatta 47242464  T
Q  123 gtccaattat-ttcatttcagcaaggatttatatattcaactttacagtaaaaaatgtccttacttaagaaatgttatcacattagggttgcccatttca 221  Q
    |||||||||  ||||||||| ||||| |||| |||||||| || ||| ||||||||||  |||||| |||||||| || |||||||||||||||||||||    
T  47242465 gtccaattaacttcatttcaacaaggctttagatattcaaattcacaataaaaaatgtatttactttagaaatgtgatgacattagggttgcccatttca 47242564  T
Q  222 aagtttagggacttaagtatgtcagcttccat 253  Q
    ||||| ||||  || |||||||||||||||||    
T  47242565 aagttcagggttttgagtatgtcagcttccat 47242596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 352 - 459
Target Start/End: Original strand, 47253966 - 47254073
Alignment:
Q  352 catgaataggatatttacctcttccaggtcataggtgttatcagtaatttggcagaaatccactgcctttggtggggtaatttcttcatactttctgcat 451  Q
    |||||||| ||||||||||| || ||| |||||||||||||||||||| ||||||||||| || |||||||||||||  ||||||||||||||||||||     
T  47253966 catgaatatgatatttacctgtttcagctcataggtgttatcagtaatctggcagaaatcaacagcctttggtggggagatttcttcatactttctgcaa 47254065  T
Q  452 atttaaaa 459  Q
    ||||||||    
T  47254066 atttaaaa 47254073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 924 - 1014
Target Start/End: Original strand, 47242881 - 47242971
Alignment:
Q  924 agttgttgagggcttacgatgcaatgagcatggatgaaacaccgagcaactgaagcttagatctgctgacaggttcaatagataagaatct 1014  Q
    ||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||| |||||   |||||||||||||    
T  47242881 agttgttgagatcttacgatgcaatgagcatggatgaaacaccaagcaactgaagcttagatctaatgataggttggttagataagaatct 47242971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 366 - 454
Target Start/End: Original strand, 47242723 - 47242811
Alignment:
Q  366 ttacctcttccaggtcataggtgttatcagtaatttggcagaaatccactgcctttggtggggtaatttcttcatactttctgcatatt 454  Q
    ||||||| || || ||||| ||||||||||| |||||||||||||| |  |||||||||||||| |||||||||||||| |||||||||    
T  47242723 ttacctcgtcaagatcatatgtgttatcagtgatttggcagaaatctatggcctttggtggggtgatttcttcatacttcctgcatatt 47242811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 936 - 995
Target Start/End: Original strand, 47254150 - 47254209
Alignment:
Q  936 cttacgatgcaatgagcatggatgaaacaccgagcaactgaagcttagatctgctgacag 995  Q
    |||||||||| |||||||||||||||||||| ||||| ||||||||||||||| ||||||    
T  47254150 cttacgatgcgatgagcatggatgaaacaccaagcaattgaagcttagatctgttgacag 47254209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 678 - 752
Target Start/End: Complemental strand, 21367759 - 21367685
Alignment:
Q  678 agaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 752  Q
    |||||| ||||||||  |||||||||||||||| ||| ||||||  |||||||||||||||| ||||||||||||    
T  21367759 agaacttatgaaaacagcttatgacattgttcacaagctgttttcagcttattttcataagttctccaagatagc 21367685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 618 - 752
Target Start/End: Original strand, 34610724 - 34610858
Alignment:
Q  618 atgtttgtattgtcttatttgagcttatatgctgacataaattaattgaaattgtttgaaagaactgatgaaaaccacttatgacattgttcataagttg 717  Q
    |||||||||| | ||||||||||||||| | ||||||||| ||   |  || | ||||  |||||| ||||||||  ||||||||||||||||||||| |    
T  34610724 atgtttgtatggacttatttgagcttatctactgacataagttttgtacaactatttgggagaacttatgaaaactgcttatgacattgttcataagtgg 34610823  T
Q  718 tttttggcttattttcataagtcctccaagatagc 752  Q
    ||||  ||| |||||||||||| | ||||||||||    
T  34610824 ttttcagctgattttcataagttcgccaagatagc 34610858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 801 - 873
Target Start/End: Original strand, 35959585 - 35959657
Alignment:
Q  801 agcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaacaag 873  Q
    ||||||||||| |||  ||||||||| ||| ||||||| |||||||||||| |||||| ||||||||||||||    
T  35959585 agcttatacataagctcttatcatgataagagcttgtgatataagctgcaaataagctgtttatccaaacaag 35959657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 678 - 752
Target Start/End: Complemental strand, 37389275 - 37389201
Alignment:
Q  678 agaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 752  Q
    |||||| |||||||| ||||||||||||||||| | | || |||| ||||||| |||||||| ||||||||||||    
T  37389275 agaacttatgaaaacaacttatgacattgttcaaatgctgcttttagcttattctcataagtactccaagatagc 37389201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 619 - 735
Target Start/End: Complemental strand, 26878351 - 26878235
Alignment:
Q  619 tgtttgtattgtcttatttgagcttatatgctgacataaattaattgaaattgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgt 718  Q
    |||||| |||| |||||| |||||||| | ||||||||| ||   ||||| ||||||| ||||||  ||||||   |||||||||||||||||||  |||    
T  26878351 tgtttgaattggcttattcgagcttatctactgacataagttgcgtgaaactgtttgagagaacttgtgaaaatagcttatgacattgttcataaactgt 26878252  T
Q  719 ttttggcttattttcat 735  Q
    |||  ||||||||||||    
T  26878251 tttcagcttattttcat 26878235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 686 - 737
Target Start/End: Original strand, 3194250 - 3194301
Alignment:
Q  686 tgaaaaccacttatgacattgttcataagttgtttttggcttattttcataa 737  Q
    ||||||| ||||||||||||| ||||||| ||||||| ||||||||||||||    
T  3194250 tgaaaacaacttatgacattgatcataagctgtttttagcttattttcataa 3194301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 796 - 871
Target Start/End: Original strand, 44747516 - 44747591
Alignment:
Q  796 gaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 871  Q
    |||||| ||||||||| || | ||| ||||  | |||||||||||||||| ||||| |||||||||||||||||||    
T  44747516 gaaataacttatacataagaacttaccatggtaggtgcttgtgttataagttgcaaataagctatttatccaaaca 44747591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 504 - 578
Target Start/End: Original strand, 24778609 - 24778682
Alignment:
Q  504 acaacaaccgccaagcctcatcacactaagtggggtctgctacatttgatcaaacaacaccaaaatgttctatca 578  Q
    |||||||| ||||||||| ||| |||||||||||||| |||||| | |||||||  |||||| ||||||||||||    
T  24778609 acaacaacagccaagccttatcccactaagtggggtcggctaca-tggatcaaattacaccataatgttctatca 24778682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 631 - 751
Target Start/End: Original strand, 46778122 - 46778241
Alignment:
Q  631 cttatttgagcttatatgctgacataaattaattgaaattgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttatt 730  Q
    ||||||||||||||| |  || ||||||||   |||||  |||||  |||||| |||||||| |||||||||||| |||||||||| | ||  ||||| |    
T  46778122 cttatttgagcttatttagtggcataaattttgtgaaaccgtttgggagaacttatgaaaacaacttatgacatttttcataagttttgttcagctta-t 46778220  T
Q  731 ttcataagtcctccaagatag 751  Q
    |||||||||  ||||||||||    
T  46778221 ttcataagttgtccaagatag 46778241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 503 - 579
Target Start/End: Complemental strand, 48532241 - 48532165
Alignment:
Q  503 aacaacaaccgccaagcctcatcacactaagtggggtctgctacatttgatcaaacaacaccaaaatgttctatcat 579  Q
    |||||||||  |||||||| ||| |||||||||||||| |||||||| |||||||  || ||| | |||||||||||    
T  48532241 aacaacaacaaccaagccttatcccactaagtggggtcggctacattggatcaaatgacgccatagtgttctatcat 48532165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 696 - 755
Target Start/End: Complemental strand, 31403432 - 31403373
Alignment:
Q  696 ttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagccaa 755  Q
    |||| ||||||||||||||||||||   ||||||||||| | || |||||||||||||||    
T  31403432 ttataacattgttcataagttgtttacagcttattttcacaggttctccaagatagccaa 31403373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 705 - 752
Target Start/End: Original strand, 33883755 - 33883802
Alignment:
Q  705 tgttcataagttgtttttggcttattttcataagtcctccaagatagc 752  Q
    |||||||||||||||||  |||||||||||||||| ||| ||||||||    
T  33883755 tgttcataagttgttttcagcttattttcataagttctctaagatagc 33883802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 619 - 752
Target Start/End: Complemental strand, 38902216 - 38902084
Alignment:
Q  619 tgtttgtattgtcttatttgagcttatatgctgacataaattaattg-aaattgtttgaaagaactgatgaaaaccacttatgacattgttcataagttg 717  Q
    |||||| |||| || |||||||||||| | ||| ||||| ||  ||| ||| |||||| ||||| | ||||||||  | |||||||||||||||| ||||    
T  38902216 tgtttgaattgcctcatttgagcttatctactggcataagtt--ttgcaaactgtttggaagaatttatgaaaacagcatatgacattgttcatacgttg 38902119  T
Q  718 tttttggcttattttcataagtcctccaagatagc 752  Q
    ||||   ||||||||||| ||| || |||||||||    
T  38902118 ttttcaacttattttcatgagttcttcaagatagc 38902084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 504 - 579
Target Start/End: Complemental strand, 40991713 - 40991639
Alignment:
Q  504 acaacaaccgccaagcctcatcacactaagtggggtctgctacatttgatcaaacaacaccaaaatgttctatcat 579  Q
    |||||||| |||||| || ||| |||||||||||||| |||||| | |||||||  |||||| |||||||||||||    
T  40991713 acaacaacagccaagtcttatctcactaagtggggtcagctaca-tggatcaaattacaccataatgttctatcat 40991639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 934 - 981
Target Start/End: Complemental strand, 47266027 - 47265980
Alignment:
Q  934 ggcttacgatgcaatgagcatggatgaaacaccgagcaactgaagctt 981  Q
    ||||||||||||||||  ||||||||||||||| ||||| ||||||||    
T  47266027 ggcttacgatgcaatgtacatggatgaaacacccagcaattgaagctt 47265980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 685 - 751
Target Start/End: Original strand, 402527 - 402593
Alignment:
Q  685 atgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatag 751  Q
    ||||||||  |||||||||||||||||||| ||||||  ||||| ||||| |||| || ||||||||    
T  402527 atgaaaacagcttatgacattgttcataagctgttttcagcttaatttcacaagttcttcaagatag 402593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 670 - 752
Target Start/End: Complemental strand, 2719568 - 2719486
Alignment:
Q  670 tgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 752  Q
    ||||||| |||||| | |||||| |||||    ||||| ||||||||||| |  |||||||||||||||| ||||||||||||    
T  2719568 tgtttgagagaacttaggaaaacaacttaaactattgtccataagttgttctcagcttattttcataagttctccaagatagc 2719486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 788 - 850
Target Start/End: Complemental strand, 28240290 - 28240228
Alignment:
Q  788 ttgctattgaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgca 850  Q
    ||||||| ||||||||||| | || |||| ||||||||| ||| ||||||| |||||||||||    
T  28240290 ttgctatcgaaatagcttaaatataagcacttatcatgataagcgcttgtgctataagctgca 28240228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 697 - 751
Target Start/End: Complemental strand, 46031063 - 46031009
Alignment:
Q  697 tatgacattgttcataagttgtttttggcttattttcataagtcctccaagatag 751  Q
    ||||||||| |||||||| ||||||  ||||||||| |||||| |||||||||||    
T  46031063 tatgacattattcataagctgttttcagcttattttaataagttctccaagatag 46031009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 799 - 848
Target Start/End: Original strand, 12704123 - 12704172
Alignment:
Q  799 atagcttatacatgagcatttatcatgacaagtgcttgtgttataagctg 848  Q
    ||||||||||||  ||  |||||||||| |||||||||||||||||||||    
T  12704123 atagcttatacacaagtgtttatcatgataagtgcttgtgttataagctg 12704172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 818 - 871
Target Start/End: Original strand, 30956772 - 30956825
Alignment:
Q  818 ttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 871  Q
    ||||||||| |||  |||||| |||||||||||| |||||| ||||||||||||    
T  30956772 ttatcatgataagcccttgtgctataagctgcaaataagctgtttatccaaaca 30956825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 818 - 871
Target Start/End: Original strand, 30972584 - 30972637
Alignment:
Q  818 ttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 871  Q
    ||||||||| |||  |||||| |||||||||||| |||||| ||||||||||||    
T  30972584 ttatcatgataagcccttgtgctataagctgcaaataagctgtttatccaaaca 30972637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 4e-22; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 612 - 753
Target Start/End: Original strand, 7928210 - 7928352
Alignment:
Q  612 aagggcatgtttgtattgtcttatttgagcttatatgctgacataaattaattgaaattgtttgaaagaactgatgaaaaccacttatg-acattgttca 710  Q
    |||||| |||||| |||| ||||||||||||||| |  |||||||| ||   ||| | |||| |||||||||  |||||||  |||||| ||||||||||    
T  7928210 aagggcctgtttggattggcttatttgagcttatctattgacataagttgtgtgagactgttagaaagaacttttgaaaacagcttatggacattgttca 7928309  T
Q  711 taagttgtttttggcttattttcataagtcctccaagatagcc 753  Q
    |||||||||||  |||||||||||||||| |||||||||||||    
T  7928310 taagttgttttcagcttattttcataagttctccaagatagcc 7928352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 803 - 878
Target Start/End: Complemental strand, 9395079 - 9395004
Alignment:
Q  803 cttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaacaaggccaa 878  Q
    ||||||||||||  |||||||||| ||| ||||||| ||||||| |||| |||||||| |||||||||||||||||    
T  9395079 cttatacatgagtgtttatcatgataagagcttgtgctataagccgcaaataagctatgtatccaaacaaggccaa 9395004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 686 - 752
Target Start/End: Complemental strand, 4607009 - 4606943
Alignment:
Q  686 tgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 752  Q
    ||||||| |||||||||||||||||| || || |||| |||||||||||||||| ||||||||||||    
T  4607009 tgaaaacaacttatgacattgttcatgagctgcttttagcttattttcataagttctccaagatagc 4606943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 619 - 752
Target Start/End: Original strand, 26143561 - 26143692
Alignment:
Q  619 tgtttgtattgtcttatttgagcttatatgctgacataaattaattgaaattgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgt 718  Q
    |||||| |||| ||| ||||||||||| | ||||||||||||  |||| | ||||||  |||||| | |||||| ||||||| ||||||||| | ||| |    
T  26143561 tgtttggattggcttgtttgagcttatctactgacataaatt--ttgagactgtttgggagaacttacgaaaacaacttatgtcattgttcacaggttat 26143658  T
Q  719 ttttggcttattttcataagtcctccaagatagc 752  Q
    |||  |||||||||||||||| ||||||| ||||    
T  26143659 tttcagcttattttcataagttctccaagttagc 26143692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 688 - 752
Target Start/End: Complemental strand, 3611308 - 3611244
Alignment:
Q  688 aaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 752  Q
    ||||| |||||||||||| |||||||  ||||||| |||||||||||||||| ||||||||||||    
T  3611308 aaaacaacttatgacattattcataaactgtttttagcttattttcataagttctccaagatagc 3611244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 670 - 752
Target Start/End: Complemental strand, 750770 - 750688
Alignment:
Q  670 tgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 752  Q
    |||||| ||||||| |||||||   || ||||||||||||||||| ||||||  |||||||| ||||||| ||||||||||||    
T  750770 tgtttgcaagaacttatgaaaagagctaatgacattgttcataagctgttttgagcttatttgcataagttctccaagatagc 750688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 678 - 752
Target Start/End: Complemental strand, 16451210 - 16451136
Alignment:
Q  678 agaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 752  Q
    |||||| |||||||| |||||||||||||||||| || ||||||  |||||||||||  ||| ||||||||||||    
T  16451210 agaacttatgaaaacaacttatgacattgttcatgagctgttttcagcttattttcacgagttctccaagatagc 16451136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 782 - 878
Target Start/End: Complemental strand, 43570384 - 43570290
Alignment:
Q  782 tatatgttgctattgaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaacaaggccaa 878  Q
    ||||| || |||| ||| ||||||||||| | ||  ||||||||| ||||||||||| |||||||||||| |||||| |||| ||||||| ||||||    
T  43570384 tatattttactatagaattagcttatacaagcgc--ttatcatgataagtgcttgtgctataagctgcaaataagctgtttacccaaacacggccaa 43570290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 680 - 750
Target Start/End: Complemental strand, 36043994 - 36043924
Alignment:
Q  680 aactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagata 750  Q
    |||| |||||||| ||||| ||||||||||||||| ||||||| ||| | |||||||||  ||||||||||    
T  36043994 aacttatgaaaacaacttacgacattgttcataagctgtttttagctcaatttcataagctctccaagata 36043924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 613 - 746
Target Start/End: Complemental strand, 15305831 - 15305698
Alignment:
Q  613 agggcatgtttgtattgtcttatttgagcttatatgctgacataaattaattgaaattgtttgaaagaactgatgaaaaccacttatgacattgttcata 712  Q
    ||||| |||||| |||| ||||||||||||||| |  |||||||| ||   ||||| ||||||  ||||||  ||| ||| ||||||| || | ||||||    
T  15305831 agggcctgtttggattggcttatttgagcttatctattgacataagttttgtgaaactgtttggtagaacttttgacaacaacttatggcaattttcata 15305732  T
Q  713 agttgtttttggcttattttcataagtcctccaa 746  Q
    |||| ||||   ||||||||||||||| ||||||    
T  15305731 agtttttttcaacttattttcataagttctccaa 15305698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 786 - 871
Target Start/End: Original strand, 28792314 - 28792399
Alignment:
Q  786 tgttgctattgaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 871  Q
    ||||||||| | |||||||||||||| ||   || | |||| | ||||||||| |||||||||||| |||||| ||||||||||||    
T  28792314 tgttgctataggaatagcttatacataagtgattgtaatgataggtgcttgtgctataagctgcaagtaagctttttatccaaaca 28792399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 801 - 878
Target Start/End: Complemental strand, 41407242 - 41407165
Alignment:
Q  801 agcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaacaaggccaa 878  Q
    ||||||||||| ||   ||||||||| ||| ||||||| ||||||||||||  ||||| |||||||||||| ||||||    
T  41407242 agcttatacataagtgcttatcatgataagcgcttgtgctataagctgcaaacaagctgtttatccaaacagggccaa 41407165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 670 - 739
Target Start/End: Original strand, 44606081 - 44606149
Alignment:
Q  670 tgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagt 739  Q
    |||||| ||||||| |||||||| |||||||||| ||| |||||||||||||  ||| ||||||||||||    
T  44606081 tgtttggaagaacttatgaaaacaacttatgaca-tgtccataagttgttttcagctgattttcataagt 44606149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 635 - 751
Target Start/End: Original strand, 7035502 - 7035618
Alignment:
Q  635 tttgagcttatatgctgacataaattaattgaaattgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttca 734  Q
    ||||| |||||||||| |||||| ||   ||| | |||||  ||||||| ||| ||||  |||||||||  ||||||||| ||||||  |||||||||||    
T  7035502 tttgatcttatatgctaacataagttttgtgagactgttttgaagaacttatggaaacagcttatgacacagttcataaggtgttttccgcttattttca 7035601  T
Q  735 taagtcctccaagatag 751  Q
    |||||  ||||||||||    
T  7035602 taagttttccaagatag 7035618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 678 - 738
Target Start/End: Original strand, 28677638 - 28677697
Alignment:
Q  678 agaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataag 738  Q
    |||||| ||||||||  ||||||||||| ||||||||||||||| ||||||||| ||||||    
T  28677638 agaacttatgaaaacagcttatgacatt-ttcataagttgttttcggcttatttccataag 28677697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 704 - 752
Target Start/End: Original strand, 35379020 - 35379068
Alignment:
Q  704 ttgttcataagttgtttttggcttattttcataagtcctccaagatagc 752  Q
    ||||||||||||||||||  |||||||||||||||  ||||||||||||    
T  35379020 ttgttcataagttgttttcagcttattttcataagctctccaagatagc 35379068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 695 - 739
Target Start/End: Original strand, 40682390 - 40682434
Alignment:
Q  695 cttatgacattgttcataagttgtttttggcttattttcataagt 739  Q
    |||||||||||||||||||||||||||   |||||||||||||||    
T  40682390 cttatgacattgttcataagttgttttcaacttattttcataagt 40682434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 678 - 738
Target Start/End: Complemental strand, 43570505 - 43570446
Alignment:
Q  678 agaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataag 738  Q
    |||||| ||||||||  |||||||||||||||||||| | ||||| |||||||||||||||    
T  43570505 agaacttatgaaaacagcttatgacattgttcataagct-tttttagcttattttcataag 43570446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 685 - 752
Target Start/End: Complemental strand, 40279352 - 40279285
Alignment:
Q  685 atgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 752  Q
    |||||||| ||||||| ||||||||||||  ||||||  ||| |||||||||||| |||||| |||||    
T  40279352 atgaaaacaacttatggcattgttcataaactgttttcagctaattttcataagttctccaatatagc 40279285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 685 - 752
Target Start/End: Complemental strand, 40279422 - 40279355
Alignment:
Q  685 atgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 752  Q
    |||||||| ||||||| ||||||||||||  ||||||  ||| |||||||||||| |||||| |||||    
T  40279422 atgaaaacaacttatggcattgttcataaactgttttcagctaattttcataagttctccaatatagc 40279355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 678 - 752
Target Start/End: Complemental strand, 8017525 - 8017452
Alignment:
Q  678 agaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 752  Q
    |||||| ||||||||  ||||||| || |||||||| |||||||  || ||||||||||||| ||||||||||||    
T  8017525 agaacttatgaaaacagcttatgatat-gttcataatttgttttctgcgtattttcataagttctccaagatagc 8017452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 789 - 871
Target Start/End: Complemental strand, 9174777 - 9174695
Alignment:
Q  789 tgctattgaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 871  Q
    |||||| |||||||||||||||| ||  |||||||||| || ||||  | | ||||||||||| |||| | ||||||||||||    
T  9174777 tgctatagaaatagcttatacataagtgtttatcatgataaatgctaatctcataagctgcaaataagttgtttatccaaaca 9174695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 688 - 738
Target Start/End: Complemental strand, 9174897 - 9174847
Alignment:
Q  688 aaaaccacttatgacattgttcataagttgtttttggcttattttcataag 738  Q
    ||||| ||||||||||||||||||||| | ||||  |||||||||||||||    
T  9174897 aaaacaacttatgacattgttcataagctattttcagcttattttcataag 9174847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 695 - 752
Target Start/End: Complemental strand, 1625975 - 1625918
Alignment:
Q  695 cttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 752  Q
    ||||||||| |||||||||| ||||||  ||| |||||| ||||| ||||||||||||    
T  1625975 cttatgacaatgttcataagatgttttcagctgattttcgtaagttctccaagatagc 1625918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 818 - 871
Target Start/End: Original strand, 15757812 - 15757865
Alignment:
Q  818 ttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 871  Q
    ||||||||| ||| ||||||| ||||||||| || |||||| ||||||||||||    
T  15757812 ttatcatgataagcgcttgtgctataagctgaaaataagctgtttatccaaaca 15757865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 613 - 746
Target Start/End: Complemental strand, 26202185 - 26202052
Alignment:
Q  613 agggcatgtttgtattgtcttatttgagcttatatgctgacataaattaattgaaattgtttgaaagaactgatgaaaaccacttatgacattgttcata 712  Q
    ||||| |||||| |||  ||||||||| ||||| ||||||||||| ||   ||| ||| ||||  |||| | |||| ||| |||||||||| | ||||||    
T  26202185 agggcctgtttggattaacttatttgaacttatctgctgacataagttttgtgagattctttgctagaatttatgagaacaacttatgacaattttcata 26202086  T
Q  713 agttgtttttggcttattttcataagtcctccaa 746  Q
    || | ||||   ||||||||||||||| ||||||    
T  26202085 agcttttttcaacttattttcataagttctccaa 26202052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 804 - 869
Target Start/End: Complemental strand, 26626824 - 26626759
Alignment:
Q  804 ttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaa 869  Q
    |||||||| || ||||||||||| ||| |||| || |||||||||||| |||| | ||||||||||    
T  26626824 ttatacataagtatttatcatgataagagcttatgctataagctgcaaataagttgtttatccaaa 26626759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 695 - 752
Target Start/End: Complemental strand, 26626948 - 26626891
Alignment:
Q  695 cttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 752  Q
    |||||||||||||||||||  ||||||  | |||||||||||||| || |||||||||    
T  26626948 cttatgacattgttcataatctgttttcaggttattttcataagttctgcaagatagc 26626891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 695 - 752
Target Start/End: Original strand, 29316771 - 29316827
Alignment:
Q  695 cttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 752  Q
    |||||||||| ||||||||||| ||||  |||||||| ||||||| ||||||||||||    
T  29316771 cttatgacat-gttcataagttcttttcagcttatttccataagttctccaagatagc 29316827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 689 - 738
Target Start/End: Original strand, 41809235 - 41809283
Alignment:
Q  689 aaaccacttatgacattgttcataagttgtttttggcttattttcataag 738  Q
    |||| ||||||||||| ||||||||||||||||| |||||||| ||||||    
T  41809235 aaacaacttatgacat-gttcataagttgtttttagcttatttccataag 41809283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 3e-17; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 797 - 871
Target Start/End: Original strand, 44863077 - 44863151
Alignment:
Q  797 aaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 871  Q
    ||||||||||| ||| |||| ||||||||||||||||||||| |||||||||||| |||| | ||||||||||||    
T  44863077 aaatagcttatgcataagcacttatcatgacaagtgcttgtgctataagctgcaaataagttgtttatccaaaca 44863151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 619 - 712
Target Start/End: Complemental strand, 55437227 - 55437134
Alignment:
Q  619 tgtttgtattgtcttatttgagcttatatgctgacataaattaattgaaattgtttgaaagaactgatgaaaaccacttatgacattgttcata 712  Q
    |||||| |||| |||||||||| |||| | ||| ||||| ||   |||||||||||||||||||| |||||||| ||||||||| |||||||||    
T  55437227 tgtttggattggcttatttgagtttatctactgccataagttttgtgaaattgtttgaaagaacttatgaaaacaacttatgacgttgttcata 55437134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 685 - 752
Target Start/End: Original strand, 17822850 - 17822917
Alignment:
Q  685 atgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 752  Q
    ||||||||  ||||||||||| |||||||| | ||||| |||||||||||||||| ||||||||||||    
T  17822850 atgaaaacagcttatgacatttttcataagctttttttagcttattttcataagttctccaagatagc 17822917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 503 - 610
Target Start/End: Original strand, 22420716 - 22420822
Alignment:
Q  503 aacaacaaccgccaagcctcatcacactaagtggggtctgctacatttgatcaaacaacaccaaaatgttctatcatctatcttatctctatcaaattca 602  Q
    |||||||||  |||||||| ||| ||||||||||||||  ||||||  ||||||||||| ||| |||| |||||||| || | |||||||||| || |||    
T  22420716 aacaacaacaaccaagccttatcccactaagtggggtcaactacata-gatcaaacaacgccataatgctctatcatttaccatatctctatccaactca 22420814  T
Q  603 ttaatctc 610  Q
    ||||||||    
T  22420815 ttaatctc 22420822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 621 - 752
Target Start/End: Original strand, 52315118 - 52315249
Alignment:
Q  621 tttgtattgtcttatttgagcttatatgctgacataaattaattgaaattgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgttt 720  Q
    |||| |||| |||||||||| |||| | ||||| ||| ||   ||| |||||||| ||||||| || ||||| |||||| ||||| ||||||||||| ||    
T  52315118 tttggattgacttatttgagtttatctactgacgtaagttttgtgagattgtttggaagaacttatcaaaacaacttatcacattattcataagttgctt 52315217  T
Q  721 ttggcttattttcataagtcctccaagatagc 752  Q
    |  ||||||||||||||||  ||||| |||||    
T  52315218 tcagcttattttcataagttttccaaaatagc 52315249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 619 - 751
Target Start/End: Original strand, 27043749 - 27043881
Alignment:
Q  619 tgtttgtattgtcttatttgagcttatatgctgacataaattaattgaaattgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgt 718  Q
    |||||| |||| ||||||||||||||| | ||||||||| ||   ||||| |||||| ||||| | ||| |||   |||||| ||| || ||||| ||||    
T  27043749 tgtttggattgacttatttgagcttatctactgacataagttttgtgaaactgtttggaagaagttatgcaaatagcttatggcatcgtccataaattgt 27043848  T
Q  719 ttttggcttattttcataagtcctccaagatag 751  Q
    |||| |||||| |||||| || |||||||||||    
T  27043849 ttttagcttatattcatacgttctccaagatag 27043881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 789 - 869
Target Start/End: Complemental strand, 44138522 - 44138442
Alignment:
Q  789 tgctattgaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaa 869  Q
    |||||| |||| ||||||||||| ||||  |||||||| ||||||||||  || ||||||||| |||||| ||||||||||    
T  44138522 tgctatagaaacagcttatacataagcaagtatcatgataagtgcttgtactaaaagctgcaaataagctgtttatccaaa 44138442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 788 - 848
Target Start/End: Complemental strand, 23277377 - 23277317
Alignment:
Q  788 ttgctattgaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctg 848  Q
    |||||||||| ||||||||||||| |||  ||||||| | ||||||||||| |||||||||    
T  23277377 ttgctattgagatagcttatacataagctcttatcattataagtgcttgtgctataagctg 23277317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 687 - 739
Target Start/End: Complemental strand, 25332858 - 25332806
Alignment:
Q  687 gaaaaccacttatgacattgttcataagttgtttttggcttattttcataagt 739  Q
    |||||| ||||||| |||| |||||||||||||||  ||||||||||||||||    
T  25332858 gaaaacaacttatggcattattcataagttgttttcagcttattttcataagt 25332806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 503 - 579
Target Start/End: Complemental strand, 25575107 - 25575032
Alignment:
Q  503 aacaacaaccgccaagcctcatcacactaagtggggtctgctacatttgatcaaacaacaccaaaatgttctatcat 579  Q
    |||||||||  |||||||| ||| |||||| |||||||||||||| | |||||||  |||||| |||||||||||||    
T  25575107 aacaacaacaaccaagccttatcccactaaatggggtctgctaca-tggatcaaattacaccacaatgttctatcat 25575032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 530 - 609
Target Start/End: Original strand, 29209201 - 29209279
Alignment:
Q  530 taagtggggtctgctacatttgatcaaacaacaccaaaatgttctatcatctatcttatctctatcaaattcattaatct 609  Q
    ||||||||||| |||||||| ||||||||||| ||| |||| |||||||| || | ||| |||||| || ||||||||||    
T  29209201 taagtggggtcggctacatt-gatcaaacaacgccataatgctctatcatataccatatttctatccaactcattaatct 29209279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 796 - 851
Target Start/End: Original strand, 42641747 - 42641802
Alignment:
Q  796 gaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaa 851  Q
    |||||||||||||||| | || ||||||||| |||||||| ||| |||||||||||    
T  42641747 gaaatagcttatacataaacacttatcatgataagtgcttatgtaataagctgcaa 42641802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 670 - 752
Target Start/End: Original strand, 13126546 - 13126628
Alignment:
Q  670 tgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 752  Q
    |||||| ||||||| || |||||  |||||||||||  ||||||| | ||||  |||||||||||||||| ||| ||||||||    
T  13126546 tgtttggaagaacttataaaaacagcttatgacatttatcataagcttttttcagcttattttcataagttctcgaagatagc 13126628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 718 - 752
Target Start/End: Original strand, 16199999 - 16200033
Alignment:
Q  718 tttttggcttattttcataagtcctccaagatagc 752  Q
    ||||| |||||||||||||||||||||||||||||    
T  16199999 tttttagcttattttcataagtcctccaagatagc 16200033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 694 - 752
Target Start/End: Complemental strand, 42685499 - 42685442
Alignment:
Q  694 acttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 752  Q
    ||||||||||| ||| ||||||||||||||||||||||||| | || |||||| |||||    
T  42685499 acttatgacat-gtttataagttgtttttggcttattttcacacgttctccaaaatagc 42685442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 499 - 548
Target Start/End: Complemental strand, 15665388 - 15665339
Alignment:
Q  499 aactaacaacaaccgccaagcctcatcacactaagtggggtctgctacat 548  Q
    |||||||||||||  |||||||| ||| |||||||||||||| |||||||    
T  15665388 aactaacaacaacaaccaagccttatcccactaagtggggtcagctacat 15665339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 678 - 738
Target Start/End: Complemental strand, 28615426 - 28615366
Alignment:
Q  678 agaactgatgaaaaccacttatgacattgttcataagttgttttt-ggcttattttcataag 738  Q
    |||||| ||||||||  || |||||||| |||||||||||||||| ||||||||||||||||    
T  28615426 agaacttatgaaaacagctaatgacatt-ttcataagttgttttttggcttattttcataag 28615366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 828 - 873
Target Start/End: Original strand, 42404138 - 42404183
Alignment:
Q  828 aagtgcttgtgttataagctgcaactaagctatttatccaaacaag 873  Q
    ||||||||||| |||||| ||||| ||||||||| |||||||||||    
T  42404138 aagtgcttgtgctataaggtgcaaataagctattcatccaaacaag 42404183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 503 - 548
Target Start/End: Original strand, 48174092 - 48174137
Alignment:
Q  503 aacaacaaccgccaagcctcatcacactaagtggggtctgctacat 548  Q
    |||||||||  |||||||| ||| ||||||||||||||||||||||    
T  48174092 aacaacaacaaccaagccttatcccactaagtggggtctgctacat 48174137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 1e-16; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 782 - 871
Target Start/End: Complemental strand, 46139912 - 46139823
Alignment:
Q  782 tatatgttgctattgaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 871  Q
    ||||| |||||||| |||||||||||| || | || ||||||||| |||||||||||||||||||||||| |||| | |||| |||||||    
T  46139912 tatattttgctattaaaatagcttatagataatcacttatcatgataagtgcttgtgttataagctgcaaataagttgtttaaccaaaca 46139823  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 672 - 721
Target Start/End: Original strand, 7241308 - 7241357
Alignment:
Q  672 tttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttt 721  Q
    ||||||| |||| |||||||| ||||||||||||||||||||||||||||    
T  7241308 tttgaaaaaacttatgaaaacgacttatgacattgttcataagttgtttt 7241357  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 669 - 752
Target Start/End: Complemental strand, 7244780 - 7244698
Alignment:
Q  669 ttgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 752  Q
    |||||||||||| |||||| |||| | ||||||||| | ||||||||||||||  |||||||||||||||  |||||| |||||    
T  7244780 ttgtttgaaagagctgatggaaacaatttatgacat-gctcataagttgttttcagcttattttcataagctctccaatatagc 7244698  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 677 - 752
Target Start/End: Complemental strand, 34036010 - 34035935
Alignment:
Q  677 aagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 752  Q
    ||||||| |||||||  ||||||||||||||||||||||||||||   |||||||||  |||| ||| ||||||||    
T  34036010 aagaacttatgaaaataacttatgacattgttcataagttgttttcaacttattttcgcaagttctctaagatagc 34035935  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 801 - 871
Target Start/End: Complemental strand, 33128698 - 33128628
Alignment:
Q  801 agcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 871  Q
    ||||||| ||| |||| ||||||||| ||||| ||||| | |||||||||| |||||| ||||||||||||    
T  33128698 agcttatgcataagcacttatcatgataagtgtttgtgctgtaagctgcaaataagctgtttatccaaaca 33128628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 668 - 734
Target Start/End: Complemental strand, 36538009 - 36537944
Alignment:
Q  668 attgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttca 734  Q
    ||||||||| |||||| ||| |||| ||||||||||| ||||||||||||||||| |||| ||||||    
T  36538009 attgtttgagagaacttatggaaacaacttatgacat-gttcataagttgtttttagctttttttca 36537944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 670 - 739
Target Start/End: Original strand, 20526899 - 20526968
Alignment:
Q  670 tgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagt 739  Q
    ||||||| |||||||||||||||  ||||||| |||||| ||||| | ||||  ||||||||||||||||    
T  20526899 tgtttgagagaactgatgaaaacagcttatgagattgtttataagatcttttcagcttattttcataagt 20526968  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 677 - 737
Target Start/End: Original strand, 15740389 - 15740448
Alignment:
Q  677 aagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataa 737  Q
    ||||||| |||||||| ||||||||||| ||||||||| |||||||  |||||||||||||    
T  15740389 aagaacttatgaaaacaacttatgacat-gttcataagctgtttttaacttattttcataa 15740448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 668 - 752
Target Start/End: Original strand, 19022553 - 19022637
Alignment:
Q  668 attgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 752  Q
    ||||||||  |||| | |||||||| |||||||||| | |||||||||||| ||   ||||||||||||||| |||||| |||||    
T  19022553 attgtttgggagaatttatgaaaacaacttatgacaattttcataagttgtcttcaacttattttcataagttctccaatatagc 19022637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 796 - 856
Target Start/End: Complemental strand, 19718963 - 19718903
Alignment:
Q  796 gaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaag 856  Q
    ||||||||||| |||  ||  |||||||||| |||||||||||||||||||||||| ||||    
T  19718963 gaaatagcttacacacaagtgtttatcatgataagtgcttgtgttataagctgcaattaag 19718903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 803 - 872
Target Start/End: Complemental strand, 20428406 - 20428335
Alignment:
Q  803 cttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctat--ttatccaaacaa 872  Q
    ||||||||| |||  ||||||||| ||||| ||||| |||||||| ||||||||||||  ||||||||||||    
T  20428406 cttatacataagcgcttatcatgagaagtgtttgtgctataagctccaactaagctatacttatccaaacaa 20428335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 796 - 868
Target Start/End: Original strand, 33552935 - 33553007
Alignment:
Q  796 gaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaa 868  Q
    |||||||||||||||| |||  ||||||||  |||||||||||  ||||||||||| |||| | |||||||||    
T  33552935 gaaatagcttatacataagcgcttatcatggtaagtgcttgtgcaataagctgcaaataagttgtttatccaa 33553007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 696 - 752
Target Start/End: Complemental strand, 46140006 - 46139950
Alignment:
Q  696 ttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 752  Q
    |||||||||| ||||| | |||||||| |||| ||||||||||| ||||||||||||    
T  46140006 ttatgacatttttcattacttgtttttagcttgttttcataagttctccaagatagc 46139950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 796 - 876
Target Start/End: Complemental strand, 47795913 - 47795833
Alignment:
Q  796 gaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaacaaggcc 876  Q
    ||||||| |||||||| ||   ||||||||| ||| |||| || |||||||||||| |||||| |||||| ||||||||||    
T  47795913 gaaataggttatacataagtggttatcatgataagcgcttatgctataagctgcaaataagctgtttatctaaacaaggcc 47795833  T

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Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 503 - 577
Target Start/End: Complemental strand, 1011329 - 1011256
Alignment:
Q  503 aacaacaaccgccaagcctcatcacactaagtggggtctgctacatttgatcaaacaacaccaaaatgttctatc 577  Q
    |||||||||  |||||||| ||| |||||||||||||| |||||| | |||||||  |||||| |||||||||||    
T  1011329 aacaacaacaaccaagccttatcccactaagtggggtcggctaca-tagatcaaattacaccataatgttctatc 1011256  T

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Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 801 - 871
Target Start/End: Complemental strand, 9210569 - 9210499
Alignment:
Q  801 agcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 871  Q
    ||||||||||| |||  ||||||||| || || ||| | |||||||||||| |||||| ||||||||||||    
T  9210569 agcttatacataagcgattatcatgataaatgtttgcgctataagctgcaaataagctgtttatccaaaca 9210499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 670 - 752
Target Start/End: Complemental strand, 20526546 - 20526464
Alignment:
Q  670 tgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 752  Q
    ||||||| |||||| ||||||||   |||| ||||| ||| |||| ||||||| |||||||||||| ||| |||||| |||||    
T  20526546 tgtttgagagaacttatgaaaacagtttatcacatttttcgtaagctgtttttagcttattttcattagttctccaaaatagc 20526464  T

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Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 532 - 610
Target Start/End: Complemental strand, 22174254 - 22174177
Alignment:
Q  532 agtggggtctgctacatttgatcaaacaacaccaaaatgttctatcatctatcttatctctatcaaattcattaatctc 610  Q
    ||||||||| |||||||  ||||||||||| ||| ||||||||||||  || | ||| |||||| ||||||||||||||    
T  22174254 agtggggtcggctacatg-gatcaaacaacgccataatgttctatcacataccatatttctatctaattcattaatctc 22174177  T

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Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 678 - 752
Target Start/End: Complemental strand, 33678872 - 33678798
Alignment:
Q  678 agaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 752  Q
    |||||| |||||||| |||||| ||||||||||| || ||||||   |||||||||| ||||  |||||||||||    
T  33678872 agaacttatgaaaacaacttataacattgttcatgagatgttttcaacttattttcacaagttttccaagatagc 33678798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 503 - 609
Target Start/End: Original strand, 40008430 - 40008535
Alignment:
Q  503 aacaacaaccgccaagcctcatcacactaagtggggtctgctacatttgatcaaacaacaccaaaatgttctatcatctatcttatctctatcaaattca 602  Q
    |||||||||  ||||| || ||| || |||||| |||| |||||||  |||||||||||  || ||||||||||||| |||| | |||||||| || |||    
T  40008430 aacaacaacaaccaagtcttatctcattaagtgaggtcagctacatg-gatcaaacaacgacataatgttctatcatatatcatgtctctatccaactca 40008528  T
Q  603 ttaatct 609  Q
    |||||||    
T  40008529 ttaatct 40008535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 818 - 871
Target Start/End: Original strand, 38138625 - 38138678
Alignment:
Q  818 ttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 871  Q
    ||||||||||||||| ||||| ||||||  |||| |||||| ||||||||||||    
T  38138625 ttatcatgacaagtgattgtgctataagacgcaaataagctgtttatccaaaca 38138678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 705 - 746
Target Start/End: Original strand, 47559606 - 47559647
Alignment:
Q  705 tgttcataagttgtttttggcttattttcataagtcctccaa 746  Q
    ||||||||||||||||| |||| |||||||||||| ||||||    
T  47559606 tgttcataagttgttttcggctcattttcataagttctccaa 47559647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 801 - 872
Target Start/End: Original strand, 24030531 - 24030602
Alignment:
Q  801 agcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaacaa 872  Q
    |||||||||| | ||| ||||||||| ||||||||||| |||||||||||| |||||| |||||||||||||    
T  24030531 agcttatacacgcgcacttatcatgataagtgcttgtgctataagctgcaaataagctgtttatccaaacaa 24030602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 685 - 752
Target Start/End: Complemental strand, 39105549 - 39105482
Alignment:
Q  685 atgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 752  Q
    ||||||||  |||||||||||||||||||| | ||||| |||||||||||||||| ||||||||||||    
T  39105549 atgaaaacagcttatgacattgttcataagctatttttagcttattttcataagttctccaagatagc 39105482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 678 - 752
Target Start/End: Original strand, 1464998 - 1465072
Alignment:
Q  678 agaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 752  Q
    |||||| ||||||||  |||||| ||||| ||||||||||||||  ||||||||||| |||||||||||||||||    
T  1464998 agaacttatgaaaacagcttatggcattgctcataagttgttttcagcttattttcacaagtcctccaagatagc 1465072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 614 - 751
Target Start/End: Complemental strand, 10640109 - 10639972
Alignment:
Q  614 gggcatgtttgtattgtcttatttgagcttatatgctgacataaattaattgaaattgtttgaaagaactgatgaaaaccacttatgacattgttcataa 713  Q
    |||| |||||| |||  |||||||||| |||| | ||||||||| ||   ||| ||||||||  |||||| ||||||||  ||||||||||| |||||||    
T  10640109 gggcctgtttggattagcttatttgagtttatctactgacataagttttgtgatattgtttgggagaacttatgaaaacagcttatgacatttttcataa 10640010  T
Q  714 gttgtttttggcttattttcataagtcctccaagatag 751  Q
    | | ||| | |||||||||||||||| |||||| ||||    
T  10640009 gctttttctagcttattttcataagttctccaaaatag 10639972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 695 - 748
Target Start/End: Original strand, 42099867 - 42099920
Alignment:
Q  695 cttatgacattgttcataagttgtttttggcttattttcataagtcctccaaga 748  Q
    |||||||||||||||||||| |||||||||||||||||||||||| || |||||    
T  42099867 cttatgacattgttcataagctgtttttggcttattttcataagttcttcaaga 42099920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 685 - 752
Target Start/End: Original strand, 12459987 - 12460053
Alignment:
Q  685 atgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 752  Q
    |||||||| ||||||||||| ||||||| |||||||||||||||||||||||||  || |||||||||    
T  12459987 atgaaaacaacttatgacat-gttcatatgttgtttttggcttattttcataagctctgcaagatagc 12460053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 797 - 871
Target Start/End: Complemental strand, 28776930 - 28776856
Alignment:
Q  797 aaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 871  Q
    ||||||||||||||| |||| ||||||||| ||||||||  | |||||||||||| |||| | ||||||||||||    
T  28776930 aaatagcttatacataagcacttatcatgataagtgcttaggctataagctgcaaataagttgtttatccaaaca 28776856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 696 - 748
Target Start/End: Complemental strand, 40848819 - 40848767
Alignment:
Q  696 ttatgacattgttcataagttgtttttggcttattttcataagtcctccaaga 748  Q
    |||| ||||||||||||||||||||| | ||||||||||||||| ||||||||    
T  40848819 ttatcacattgttcataagttgttttcgccttattttcataagttctccaaga 40848767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 817 - 876
Target Start/End: Complemental strand, 3520356 - 3520297
Alignment:
Q  817 tttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaacaaggcc 876  Q
    |||||||||||||||||||||| ||||||||| || |||| | |||||||||||| ||||    
T  3520356 tttatcatgacaagtgcttgtgctataagctgaaaataagttgtttatccaaacatggcc 3520297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 615 - 752
Target Start/End: Complemental strand, 11700317 - 11700181
Alignment:
Q  615 ggcatgtttgtattgtcttatttgagcttatatgctgacataaattaattgaaattgtttgaaagaactgatgaaaaccacttatgacattgttcataag 714  Q
    |||||||||| |||  |||||||||||||||   ||| ||||| ||   ||| | ||||| | |||||| ||| |||| ||||||||||||||||||||     
T  11700317 ggcatgtttggatttgcttatttgagcttatccactggcataagttttgtgagactgtttcacagaacttatggaaacaacttatgacattgttcataaa 11700218  T
Q  715 ttgtttttggcttattttcataagtcctccaagatagc 752  Q
    ||||||    ||||||||||||||| ||||| ||||||    
T  11700217 ttgtttcat-cttattttcataagttctccacgatagc 11700181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 818 - 871
Target Start/End: Complemental strand, 32372548 - 32372495
Alignment:
Q  818 ttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 871  Q
    ||||||||| ||||||||||| |||||||||||| |||| | ||||||||||||    
T  32372548 ttatcatgataagtgcttgtgctataagctgcaaataagttgtttatccaaaca 32372495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 796 - 876
Target Start/End: Original strand, 9202862 - 9202942
Alignment:
Q  796 gaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaacaaggcc 876  Q
    ||||||||||||| || |||| ||||||||| ||   |||||| |||||||||||| |||| | |||||||||||| ||||    
T  9202862 gaaatagcttatatataagcacttatcatgataaacacttgtgctataagctgcaaataagatgtttatccaaacagggcc 9202942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 705 - 752
Target Start/End: Original strand, 4014429 - 4014476
Alignment:
Q  705 tgttcataagttgtttttggcttattttcataagtcctccaagatagc 752  Q
    |||||||||| ||||||  |||||||||||||||| ||||||||||||    
T  4014429 tgttcataagctgttttcagcttattttcataagttctccaagatagc 4014476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 695 - 750
Target Start/End: Original strand, 9202743 - 9202798
Alignment:
Q  695 cttatgacattgttcataagttgtttttggcttattttcataagtcctccaagata 750  Q
    |||||||||||||||||||| |||||   |||||||||||||||| || |||||||    
T  9202743 cttatgacattgttcataagctgtttccagcttattttcataagttcttcaagata 9202798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 609 - 647
Target Start/End: Complemental strand, 43301039 - 43301001
Alignment:
Q  609 tccaagggcatgtttgtattgtcttatttgagcttatat 647  Q
    |||||||||||||||| |||| |||||||||||||||||    
T  43301039 tccaagggcatgtttggattggcttatttgagcttatat 43301001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 703 - 752
Target Start/End: Original strand, 7319011 - 7319060
Alignment:
Q  703 attgttcataagttgtttttggcttattttcataagtcctccaagatagc 752  Q
    ||||| ||||||||||| |  |||||||||||||||| ||||||||||||    
T  7319011 attgtccataagttgttctcagcttattttcataagttctccaagatagc 7319060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 699 - 752
Target Start/End: Complemental strand, 7985040 - 7984987
Alignment:
Q  699 tgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 752  Q
    |||| ||||||||||| ||||||  |||||||||||||| | ||||||||||||    
T  7985040 tgacgttgttcataagctgttttcagcttattttcataaattctccaagatagc 7984987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 818 - 871
Target Start/End: Original strand, 13697905 - 13697958
Alignment:
Q  818 ttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 871  Q
    ||||||||| || ||||| ||||||||||||||| |||| | ||||||||||||    
T  13697905 ttatcatgataaatgcttatgttataagctgcaaataagttgtttatccaaaca 13697958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 801 - 874
Target Start/End: Original strand, 26005367 - 26005440
Alignment:
Q  801 agcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaacaagg 874  Q
    ||||||||||| |||| ||||||| | ||||| ||||| |||||||| | | |||| | |||||||||||||||    
T  26005367 agcttatacataagcaattatcataataagtgtttgtgctataagcttctaataagttgtttatccaaacaagg 26005440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 818 - 871
Target Start/End: Complemental strand, 40426686 - 40426633
Alignment:
Q  818 ttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 871  Q
    ||||||||| ||||||||||| |||||||||||| | || | ||||||||||||    
T  40426686 ttatcatgataagtgcttgtgctataagctgcaaatgagttgtttatccaaaca 40426633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 788 - 876
Target Start/End: Complemental strand, 42100286 - 42100195
Alignment:
Q  788 ttgctattgaaatagcttataca---tgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaacaaggcc 876  Q
    ||||||| ||||||||| |||||   | ||| ||||| || | ||| ||||||| |||||||||||| |||| |||||||||||||| ||||    
T  42100286 ttgctatcgaaatagctgatacaacataagcgtttattattataagcgcttgtgatataagctgcaaataagttatttatccaaacagggcc 42100195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 697 - 752
Target Start/End: Original strand, 38503462 - 38503517
Alignment:
Q  697 tatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 752  Q
    |||||||||||||||||||||||||  |||||||||||||||| ||||||||||||    
T  38503462 tatgacattgttcataagttgttttcagcttattttcataagttctccaagatagc 38503517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 670 - 744
Target Start/End: Original strand, 3887602 - 3887676
Alignment:
Q  670 tgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctcc 744  Q
    |||||| ||||||| ||||||||  |||||||||||||||||||| |||||||  ||||||||||||||| ||||    
T  3887602 tgtttggaagaacttatgaaaacatcttatgacattgttcataagctgtttttaacttattttcataagttctcc 3887676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 694 - 752
Target Start/End: Complemental strand, 15784405 - 15784347
Alignment:
Q  694 acttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 752  Q
    ||||||||||||||||| ||||||||||| ||||||||||| |||| ||||||||||||    
T  15784405 acttatgacattgttcacaagttgtttttagcttattttcacaagttctccaagatagc 15784347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 671 - 752
Target Start/End: Original strand, 7136970 - 7137050
Alignment:
Q  671 gtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 752  Q
    ||||||||||||| ||||||| | ||||||||||  |||||||||| ||||  |||||||||||||||| ||||||||||||    
T  7136970 gtttgaaagaacttatgaaaatcgcttatgacata-ttcataagttattttcagcttattttcataagttctccaagatagc 7137050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 668 - 739
Target Start/End: Original strand, 47498807 - 47498878
Alignment:
Q  668 attgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagt 739  Q
    ||||||||  |||||| |||||||   ||||||| |||||||||||||||||||| ||||||||||||||||    
T  47498807 attgtttgggagaacttatgaaaatagcttatgatattgttcataagttgtttttagcttattttcataagt 47498878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 672 - 750
Target Start/End: Original strand, 27145708 - 27145785
Alignment:
Q  672 tttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagata 750  Q
    |||| ||||||| | |||||| ||||||||||||||||||||||| ||||  |||||||||||||||| || |||||||    
T  27145708 tttggaagaacttaagaaaacgacttatgacattgttcataagtt-ttttcagcttattttcataagttcttcaagata 27145785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 797 - 871
Target Start/End: Complemental strand, 45975645 - 45975571
Alignment:
Q  797 aaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 871  Q
    |||||| |||||||| ||   ||||||||| ||||| |||||||||||||| ||| |||||||||||||||||||    
T  45975645 aaatagtttatacataagggcttatcatgataagtgtttgtgttataagctacaaataagctatttatccaaaca 45975571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 796 - 871
Target Start/End: Original strand, 5894277 - 5894352
Alignment:
Q  796 gaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 871  Q
    |||||||||||||||| |||  ||||||||| |||  |||||| |||||||| ||| |||||| ||||||||||||    
T  5894277 gaaatagcttatacataagcgcttatcatgataagcacttgtgctataagcttcaaataagctgtttatccaaaca 5894352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 694 - 752
Target Start/End: Complemental strand, 7069377 - 7069319
Alignment:
Q  694 acttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 752  Q
    |||||||||||||||||||| ||||||||   | |||||||||||| ||||||||||||    
T  7069377 acttatgacattgttcataatttgtttttaattcattttcataagttctccaagatagc 7069319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 670 - 752
Target Start/End: Original strand, 51695465 - 51695547
Alignment:
Q  670 tgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 752  Q
    |||||| ||||||| ||  |||| |||||| |||||||||||||| | ||||  |||||||||||||| | ||||||||||||    
T  51695465 tgtttggaagaacttatataaacaacttatcacattgttcataagctattttcagcttattttcataaattctccaagatagc 51695547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 669 - 750
Target Start/End: Complemental strand, 37473504 - 37473423
Alignment:
Q  669 ttgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagata 750  Q
    |||||||  ||||||  ||||||| |||||||||||| |||||||| | |||   |||||||||||||||| ||||||||||    
T  37473504 ttgtttgggagaacttttgaaaacaacttatgacatttttcataagctttttccagcttattttcataagttctccaagata 37473423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 670 - 734
Target Start/End: Complemental strand, 4482029 - 4481966
Alignment:
Q  670 tgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttca 734  Q
    ||||||| |||||| |||||||| |||||| |||| ||||||||| ||||||| |||||||||||    
T  4482029 tgtttgagagaacttatgaaaacaacttattacat-gttcataagctgtttttagcttattttca 4481966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 803 - 871
Target Start/End: Complemental strand, 5720920 - 5720852
Alignment:
Q  803 cttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 871  Q
    ||||||||| |||  ||||||||| | |||||||||||||||||  ||| |||| ||||||||||||||    
T  5720920 cttatacataagcgcttatcatgataggtgcttgtgttataagccacaaataagatatttatccaaaca 5720852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 514 - 610
Target Start/End: Original strand, 30396739 - 30396834
Alignment:
Q  514 ccaagcctcatcacactaagtggggtctgctacatttgatcaaacaacaccaaaatgttctatcatctatcttatctctatcaaattcattaatctc 610  Q
    |||||||| ||| |||||||||||||  ||||||   ||||||||  ||||| ||||||||||||| |||| |||| ||||| || |||||||||||    
T  30396739 ccaagccttatcccactaagtggggttggctacacg-gatcaaacgccaccataatgttctatcatatatcgtatccctatccaactcattaatctc 30396834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 803 - 871
Target Start/End: Original strand, 41195325 - 41195393
Alignment:
Q  803 cttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 871  Q
    ||||||||| |||  |||||| || ||| ||||||| |||||||||||| |||| ||||||||||||||    
T  41195325 cttatacataagcgattatcaggataagcgcttgtgctataagctgcaaataagttatttatccaaaca 41195393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 705 - 756
Target Start/End: Complemental strand, 15361105 - 15361054
Alignment:
Q  705 tgttcataagttgtttttggcttattttcataagtcctccaagatagccaat 756  Q
    |||||||||||||||||  |||||||||||||||  ||||| ||||||||||    
T  15361105 tgttcataagttgttttcagcttattttcataagctctccaggatagccaat 15361054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 551 - 610
Target Start/End: Complemental strand, 15577654 - 15577595
Alignment:
Q  551 gatcaaacaacaccaaaatgttctatcatctatcttatctctatcaaattcattaatctc 610  Q
    ||||||||||||| | ||||||||||||  |||| |||||||||| || |||||||||||    
T  15577654 gatcaaacaacacaataatgttctatcaaatatcatatctctatccaactcattaatctc 15577595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 695 - 750
Target Start/End: Original strand, 38116073 - 38116128
Alignment:
Q  695 cttatgacattgttcataagttgtttttggcttattttcataagtcctccaagata 750  Q
    ||||||||||||||| ||||||||||   ||||| |||||||||| ||||||||||    
T  38116073 cttatgacattgttcctaagttgtttccagcttactttcataagttctccaagata 38116128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 788 - 851
Target Start/End: Original strand, 38116291 - 38116354
Alignment:
Q  788 ttgctattgaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaa 851  Q
    |||||||||||||||||||||||| |||  ||||||||| ||| || |||  ||||||||||||    
T  38116291 ttgctattgaaatagcttatacataagcgcttatcatgataagcgcatgtactataagctgcaa 38116354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 828 - 871
Target Start/End: Complemental strand, 46423194 - 46423151
Alignment:
Q  828 aagtgcttgtgttataagctgcaactaagctatttatccaaaca 871  Q
    |||||||||||||||||||||||| |||| | ||||||||||||    
T  46423194 aagtgcttgtgttataagctgcaaataagttgtttatccaaaca 46423151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 621 - 751
Target Start/End: Complemental strand, 1432664 - 1432534
Alignment:
Q  621 tttgtattgtcttatttgagcttatatgctgacataaattaattgaaattgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgttt 720  Q
    |||| |||| |||||||||||||||   | ||||||||||   ||| | |||||| ||||||| |||||||   | ||||||||||||||||||   |      
T  1432664 tttggattggcttatttgagcttatccaccgacataaattttgtgagactgtttggaagaacttatgaaaatagcgtatgacattgttcataagacatac 1432565  T
Q  721 ttggcttattttcataagtcctccaagatag 751  Q
    || ||||| |||||||||| |||||||||||    
T  1432564 ttagcttactttcataagttctccaagatag 1432534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 678 - 752
Target Start/End: Original strand, 3233993 - 3234067
Alignment:
Q  678 agaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 752  Q
    |||||| |||||||| |||||| ||| | |||||||||| ||||   ||||||||||||||| |||||| |||||    
T  3233993 agaacttatgaaaacaacttataacagttttcataagtttttttctacttattttcataagttctccaatatagc 3234067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 695 - 749
Target Start/End: Original strand, 5886990 - 5887043
Alignment:
Q  695 cttatgacattgttcataagttgtttttggcttattttcataagtcctccaagat 749  Q
    |||||||||| ||||||||||||||||  |||||||||| ||||| |||||||||    
T  5886990 cttatgacat-gttcataagttgttttcagcttattttcgtaagttctccaagat 5887043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 626 - 752
Target Start/End: Complemental strand, 6102297 - 6102172
Alignment:
Q  626 attgtcttatttgagcttatatgctgacataaattaattgaaattgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggc 725  Q
    |||| |||||||||| |||| | | | ||||||||   ||| ||||||||  |||||| ||||||||  ||||||| ||||||||||| |||||||  ||    
T  6102297 attgacttatttgagtttatctaccggcataaattttgtgagattgtttgggagaact-atgaaaacagcttatgatattgttcataaattgttttcagc 6102199  T
Q  726 ttattttcataagtcctccaagatagc 752  Q
    |||||| ||||| | |||| |||||||    
T  6102198 ttatttccataaattctcccagatagc 6102172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 504 - 578
Target Start/End: Original strand, 21769711 - 21769784
Alignment:
Q  504 acaacaaccgccaagcctcatcacactaagtggggtctgctacatttgatcaaacaacaccaaaatgttctatca 578  Q
    ||||||||  |||||||| |||||||||||||||||| |||||| | |||||||  || ||| ||||||||||||    
T  21769711 acaacaacaaccaagccttatcacactaagtggggtcggctaca-tggatcaaattacgccataatgttctatca 21769784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 796 - 870
Target Start/End: Original strand, 27146362 - 27146436
Alignment:
Q  796 gaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaac 870  Q
    |||||| ||||||||| | |  ||||||||| | || ||| || |||||||||||| ||||||||||||||||||    
T  27146362 gaaataccttatacataaacgcttatcatgatatgtacttatgctataagctgcaaataagctatttatccaaac 27146436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 694 - 752
Target Start/End: Original strand, 46252677 - 46252734
Alignment:
Q  694 acttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 752  Q
    ||||||||||| ||||||||||||||||  | |||||||||||||  ||||||||||||    
T  46252677 acttatgacat-gttcataagttgttttcaggttattttcataagctctccaagatagc 46252734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 797 - 871
Target Start/End: Original strand, 47498958 - 47499032
Alignment:
Q  797 aaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 871  Q
    ||||||||||||||  |||  ||||||||| |||  |||||| |||||||||||| |||| | ||||||||||||    
T  47498958 aaatagcttatacacaagcgcttatcatgataagcacttgtgctataagctgcaaataagttgtttatccaaaca 47499032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 695 - 752
Target Start/End: Original strand, 27820332 - 27820389
Alignment:
Q  695 cttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 752  Q
    |||| ||||||||||||||| | ||||  |||||||||||||| | ||||||||||||    
T  27820332 cttacgacattgttcataagctattttcagcttattttcataaattctccaagatagc 27820389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 514 - 579
Target Start/End: Complemental strand, 29129056 - 29128991
Alignment:
Q  514 ccaagcctcatcacactaagtggggtctgctacatttgatcaaacaacaccaaaatgttctatcat 579  Q
    |||||||| ||| |||||||||||||| |||||||  ||||| |  |||||| |||||||||||||    
T  29129056 ccaagccttatctcactaagtggggtcggctacatgggatcatattacaccataatgttctatcat 29128991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 707 - 752
Target Start/End: Complemental strand, 34290299 - 34290254
Alignment:
Q  707 ttcataagttgtttttggcttattttcataagtcctccaagatagc 752  Q
    |||||||||||||||  |||||||||||||||| || |||||||||    
T  34290299 ttcataagttgttttcagcttattttcataagttcttcaagatagc 34290254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 798 - 851
Target Start/End: Complemental strand, 37841952 - 37841899
Alignment:
Q  798 aatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaa 851  Q
    ||||||||||||||||| | ||||||||| |||||||| || ||| ||||||||    
T  37841952 aatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaa 37841899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 818 - 871
Target Start/End: Complemental strand, 43990172 - 43990119
Alignment:
Q  818 ttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 871  Q
    ||||||||||||  ||||||| ||||| |||||| || ||||||||||||||||    
T  43990172 ttatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaaca 43990119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 678 - 736
Target Start/End: Original strand, 32840964 - 32841022
Alignment:
Q  678 agaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcata 736  Q
    |||||| |||||||| ||||||||||||||||||||||||||||  |||||||||||||    
T  32840964 agaacttatgaaaacaacttatgacattgttcataagttgttttcagcttattttcata 32841022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 668 - 739
Target Start/End: Complemental strand, 33808405 - 33808334
Alignment:
Q  668 attgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagt 739  Q
    ||||||||  |||||| |||||||   ||||||| |||||||||||||||||||| ||||||||||||||||    
T  33808405 attgtttgggagaacttatgaaaatagcttatgatattgttcataagttgtttttagcttattttcataagt 33808334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 671 - 751
Target Start/End: Original strand, 9956785 - 9956865
Alignment:
Q  671 gtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatag 751  Q
    |||||| |||||| |||||||    ||||| |||||||||||||| |||||  |||||||||||||||| |||||||||||    
T  9956785 gtttgagagaacttatgaaaatagtttatggcattgttcataagtagttttcagcttattttcataagttctccaagatag 9956865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 695 - 750
Target Start/End: Original strand, 3536940 - 3536995
Alignment:
Q  695 cttatgacattgttcataagttgtttttggcttattttcataagtcctccaagata 750  Q
    ||||||||||||||||||| |||||||  |||||||| ||||||| ||||||||||    
T  3536940 cttatgacattgttcataaattgttttcagcttatttccataagttctccaagata 3536995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 612 - 750
Target Start/End: Original strand, 1057989 - 1058126
Alignment:
Q  612 aagggcatgtttgtattgtcttatttgagcttatatgctgacataaattaattgaaattgtttgaaagaactgatgaaaaccacttatgacattgttcat 711  Q
    ||||||| ||||| | || ||||||||||||||| | || |||||| ||   ||| | ||||||  ||||||  |||||||  ||||||||||| |||||    
T  1057989 aagggcaagtttgaactggcttatttgagcttatctacttacataagttttgtgagactgtttgggagaacttttgaaaactgcttatgacatttttcat 1058088  T
Q  712 aagttgtttttggcttattttcataagtcctccaagata 750  Q
     |||| ||||  |||||||||||||||| ||||||||||    
T  1058089 tagtt-ttttccgcttattttcataagttctccaagata 1058126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 701 - 751
Target Start/End: Complemental strand, 1113127 - 1113077
Alignment:
Q  701 acattgttcataagttgtttttggcttattttcataagtcctccaagatag 751  Q
    |||||||||||||| ||||||| ||| |||||||||||| |||||||||||    
T  1113127 acattgttcataagctgtttttagctaattttcataagttctccaagatag 1113077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 678 - 752
Target Start/End: Complemental strand, 43504842 - 43504769
Alignment:
Q  678 agaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 752  Q
    ||||||||||||||| ||||| ||| ||||| ||||| ||||||  |||||||| ||||||| ||||||||||||    
T  43504842 agaactgatgaaaacaacttacgac-ttgtttataagctgttttcagcttatttccataagttctccaagatagc 43504769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 668 - 721
Target Start/End: Original strand, 779030 - 779082
Alignment:
Q  668 attgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttt 721  Q
    |||||||||||||||| | |||||| |||||||||| |||||||||||||||||    
T  779030 attgtttgaaagaacttacgaaaacaacttatgaca-tgttcataagttgtttt 779082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 670 - 751
Target Start/End: Complemental strand, 10120856 - 10120775
Alignment:
Q  670 tgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatag 751  Q
    ||||||| |||||| ||||||||  |||||||||||  ||||| | ||||||  |||||||||||||||| |||||| ||||    
T  10120856 tgtttgagagaacttatgaaaacagcttatgacatttatcatatgctgttttcagcttattttcataagttctccaatatag 10120775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 612 - 752
Target Start/End: Original strand, 30251366 - 30251506
Alignment:
Q  612 aagggcatgtttgtattgtcttatttgagcttatatgctgacataaattaattgaaattgtttgaaagaactgatgaaaaccacttatgacattgttcat 711  Q
    |||||| |||||| |||| ||||||||||||||| | ||||||||| ||   ||| | ||||||  |||||| | ||||||  |||||  |||| |||||    
T  30251366 aagggcctgtttggattggcttatttgagcttatctactgacataagtttcgtgagactgtttgggagaacttacgaaaacagcttattgcatttttcat 30251465  T
Q  712 aagttgtttttggcttattttcataagtcctccaagatagc 752  Q
    ||| | |||   ||||||||||||||||  |||||||||||    
T  30251466 aagctttttacagcttattttcataagtggtccaagatagc 30251506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 612 - 739
Target Start/End: Original strand, 10758169 - 10758296
Alignment:
Q  612 aagggcatgtttgtattgtcttatttgagcttatatgctgacataaattaattgaaattgtttgaaagaactgatgaaaaccacttatgacattgttcat 711  Q
    ||||||||||||| |||| ||||||||| ||||| |||| |||||| ||   ||| | ||||||| |||| | ||||||||  ||||||||| | ||||     
T  10758169 aagggcatgtttgaattgacttatttgaacttatctgctaacataagttttgtgagactgtttgatagaatttatgaaaacagcttatgacaattttcaa 10758268  T
Q  712 aagttgtttttggcttattttcataagt 739  Q
    ||| | ||||  |||| |||||||||||    
T  10758269 aagcttttttcagcttgttttcataagt 10758296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 504 - 579
Target Start/End: Complemental strand, 45419517 - 45419443
Alignment:
Q  504 acaacaaccgccaagcctcatcacactaagtggggtctgctacatttgatcaaacaacaccaaaatgttctatcat 579  Q
    ||||||||  |||||||| ||| |||||||||||||| |||||| | |||||||  |||||| |||||||||||||    
T  45419517 acaacaacaaccaagccttatcccactaagtggggtcggctaca-tggatcaaattacaccataatgttctatcat 45419443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 818 - 876
Target Start/End: Complemental strand, 40981054 - 40980996
Alignment:
Q  818 ttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaacaaggcc 876  Q
    |||||| || ||| ||||||| |||||||||||| |||||| |||||||||||| ||||    
T  40981054 ttatcaagataagcgcttgtgctataagctgcaaataagctgtttatccaaacagggcc 40980996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 800 - 870
Target Start/End: Original strand, 41475178 - 41475248
Alignment:
Q  800 tagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaac 870  Q
    |||||||||||| ||   ||||||||||||||| |||| ||||||| ||||| |||| | |||||||||||    
T  41475178 tagcttatacataagtgcttatcatgacaagtgtttgtcttataagttgcaaataagttgtttatccaaac 41475248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 515 - 608
Target Start/End: Complemental strand, 23492305 - 23492213
Alignment:
Q  515 caagcctcatcacactaagtggggtctgctacatttgatcaaacaacaccaaaatgttctatcatctatcttatctctatcaaattcattaatc 608  Q
    ||||||| ||| |||||||||||||| |||||| | ||| |||  |||||| | ||||||||||| |||| ||| |||||| || |||||||||    
T  23492305 caagccttatctcactaagtggggtcggctaca-tggattaaatgacaccatagtgttctatcatatatcatatttctatccaactcattaatc 23492213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 801 - 871
Target Start/End: Complemental strand, 6538458 - 6538388
Alignment:
Q  801 agcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 871  Q
    ||||||||||| |||  ||||||| | ||||||||||| |||||||||||| |||||||||||||||||||    
T  6538458 agcttatacataagcgcttatcattataagtgcttgtgctataagctgcaaataagctatttatccaaaca 6538388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 672 - 749
Target Start/End: Complemental strand, 2455357 - 2455280
Alignment:
Q  672 tttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagat 749  Q
    ||||| |||||| |||||||| |||||| |||||||| ||||||||||||  ||||||||||| || | |||||||||    
T  2455357 tttgagagaacttatgaaaacaacttattacattgtttataagttgttttcagcttattttcacaacttctccaagat 2455280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 670 - 739
Target Start/End: Complemental strand, 2735169 - 2735100
Alignment:
Q  670 tgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagt 739  Q
    ||||||| | |||| ||||||||  ||||||||||| |||||||| |||||| |||||||||||||||||    
T  2735169 tgtttgagataacttatgaaaacggcttatgacatttttcataagctgttttcggcttattttcataagt 2735100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 678 - 751
Target Start/End: Original strand, 9912169 - 9912242
Alignment:
Q  678 agaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatag 751  Q
    |||||| |||||| |  |||||||||||||||||||| ||||||  |||||||||||||||| |||||| ||||    
T  9912169 agaacttatgaaaccagcttatgacattgttcataagctgttttgagcttattttcataagttctccaatatag 9912242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 551 - 609
Target Start/End: Complemental strand, 3964025 - 3963967
Alignment:
Q  551 gatcaaacaacaccaaaatgttctatcatctatcttatctctatcaaattcattaatct 609  Q
    ||||||||||| ||  ||||||||||||| |||| ||||||||||||| ||||||||||    
T  3964025 gatcaaacaacgccgtaatgttctatcatatatcgtatctctatcaaactcattaatct 3963967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 678 - 736
Target Start/End: Original strand, 33832252 - 33832309
Alignment:
Q  678 agaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcata 736  Q
    |||||| |||||||| ||||||||||| ||| ||||||||||||| |||||||||||||    
T  33832252 agaacttatgaaaacaacttatgacat-gtttataagttgtttttagcttattttcata 33832309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 668 - 746
Target Start/End: Original strand, 34910377 - 34910455
Alignment:
Q  668 attgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaa 746  Q
    |||||||| |||||   ||||||||  ||||||||||||||||| |||||||||  ||||| |||||||||| ||||||    
T  34910377 attgtttggaagaaactatgaaaacagcttatgacattgttcatgagttgttttccgcttactttcataagttctccaa 34910455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 796 - 876
Target Start/End: Complemental strand, 264327 - 264247
Alignment:
Q  796 gaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaacaaggcc 876  Q
    ||||||||||||| || |||| ||||||||| |||  |||||| |||||||||||| | |||| || ||||||||| ||||    
T  264327 gaaatagcttatatataagcacttatcatgataagcacttgtgctataagctgcaaattagctgttaatccaaacagggcc 264247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 677 - 737
Target Start/End: Complemental strand, 1575987 - 1575928
Alignment:
Q  677 aagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataa 737  Q
    ||||||| |||||||| ||||||||||| ||||||||| |||||||  |||||||||||||    
T  1575987 aagaacttatgaaaacaacttatgacat-gttcataagctgtttttaacttattttcataa 1575928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 677 - 753
Target Start/End: Complemental strand, 31624182 - 31624107
Alignment:
Q  677 aagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagcc 753  Q
    ||||||| ||||||||  |||||||||| ||||||||| ||||||   ||||||||||||| | |||||||||||||    
T  31624182 aagaacttatgaaaacagcttatgacat-gttcataagctgttttcaacttattttcataatttctccaagatagcc 31624107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 788 - 876
Target Start/End: Complemental strand, 35069516 - 35069428
Alignment:
Q  788 ttgctattgaaatagcttatacatgagcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaacaaggcc 876  Q
    |||||||  ||||||||||| ||| |||| ||||||||| ||  ||||||| |||||||||||| |||| | |||||| ||||| ||||    
T  35069516 ttgctatataaatagcttatgcataagcacttatcatgataaacgcttgtgctataagctgcaaataagttgtttatcaaaacagggcc 35069428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 696 - 739
Target Start/End: Original strand, 34882417 - 34882460
Alignment:
Q  696 ttatgacattgttcataagttgtttttggcttattttcataagt 739  Q
    ||||||||||||||||||||||||||   |||||||||||||||    
T  34882417 ttatgacattgttcataagttgttttccacttattttcataagt 34882460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 678 - 752
Target Start/End: Complemental strand, 31813253 - 31813179
Alignment:
Q  678 agaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttcataagtcctccaagatagc 752  Q
    |||||| |||||||   ||||||| ||||||||||||  |||||  ||||||||||||| || ||||||||||||    
T  31813253 agaacttatgaaaattgcttatgagattgttcataagccgttttcagcttattttcatatgttctccaagatagc 31813179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 612 - 657
Target Start/End: Original strand, 35069524 - 35069569
Alignment:
Q  612 aagggcatgtttgtattgtcttatttgagcttatatgctgacataa 657  Q
    |||||| ||||||||||| ||||||||||||||| | |||||||||    
T  35069524 aagggcctgtttgtattggcttatttgagcttatctactgacataa 35069569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0608 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 670 - 734
Target Start/End: Original strand, 9608 - 9671
Alignment:
Q  670 tgtttgaaagaactgatgaaaaccacttatgacattgttcataagttgtttttggcttattttca 734  Q
    ||||||| |||||| |||||||| |||||| |||| ||||||||| ||||||| |||||||||||    
T  9608 tgtttgagagaacttatgaaaacaacttattacat-gttcataagctgtttttagcttattttca 9671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0699 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0699
Description:

Target: scaffold0699; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 821 - 871
Target Start/End: Complemental strand, 6835 - 6785
Alignment:
Q  821 tcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 871  Q
    |||||| ||||||||||| | |||||||||| ||||| |||||||||||||    
T  6835 tcatgataagtgcttgtgctctaagctgcaaataagcaatttatccaaaca 6785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 813 - 871
Target Start/End: Complemental strand, 158036 - 157978
Alignment:
Q  813 agcatttatcatgacaagtgcttgtgttataagctgcaactaagctatttatccaaaca 871  Q
    |||| ||||||| | ||||| ||||| |||||||||||| |||||| ||||||||||||    
T  158036 agcaattatcatcataagtgtttgtgctataagctgcaaataagctgtttatccaaaca 157978  T

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