View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18629_high_12 (Length: 366)
Name: NF18629_high_12
Description: NF18629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18629_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 365
Target Start/End: Complemental strand, 48675474 - 48675127
Alignment:
| Q |
18 |
atgtgacaaaatattcagactattaataaaatgttagagactatttattattattattatcannnnnnnnnnngaagaggcatttattatcatttgtttg |
117 |
Q |
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| T |
48675474 |
atgtgacaaaatattcagattattaataaaatgttagagactatttattattattatcaaattttttttttttgaagaggcatttattatcatttgtttg |
48675375 |
T |
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| Q |
118 |
atttaaataataagttgaaggacgaaattggtggttgaaaaatatatgtgctagtaatgtaaaatcactctccccaccaccttagggcaattctgtaagt |
217 |
Q |
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| T |
48675374 |
atttaaataataagttgaaggacgaaattggtggttgaaaaatatatgtgctagtaatgtaaaatcactctccccaccaccttagggcaattctgtaagt |
48675275 |
T |
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| Q |
218 |
tgaatttcaattttaactatacaatatatctattatttaaatgctgataatcacaatgtacagttcaatgaaagtcatttcattgtttgattcaataata |
317 |
Q |
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| T |
48675274 |
tgaatttcaattttaactatacaatatatctattatttaaaagcttataatcacaatgtacagttcaatgaaagtcatttcattgtttgattcaataata |
48675175 |
T |
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| Q |
318 |
tgaaatacttttagtattaattaaaagaacctacctttgcttctccac |
365 |
Q |
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| T |
48675174 |
tgaaatacttttagtattaattaaaagaacctaccattgattctccac |
48675127 |
T |
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