View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18629_high_16 (Length: 295)

Name: NF18629_high_16
Description: NF18629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18629_high_16
NF18629_high_16
[»] chr4 (1 HSPs)
chr4 (1-292)||(52807068-52807359)


Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 52807068 - 52807359
Alignment:
Q  1 agccaacacaagagaatgcttcaaaactgaagcagcctctgctgtgagggtctgctgcaatgcacaacctcctgagcgcatcacttgatatatacacacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52807068 agccaacacaagagaatgcttcaaaactgaagcagcctctgctgtgagggtctgctgcaatgcacaacctcctgagcgcatcacttgatatatacacacc 52807167  T
Q  101 ccctatacacttccctctttgtctttggaagctagtttagtttagttactctcttttgtttttctatcaaagaaacgtggaactagcttaaagagtttca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52807168 ccctatacacttccctctttgtctttggaagctagtttagtttagttactctcttttgtttttctatcaaagaaacgtggaactagcttaaagagtttca 52807267  T
Q  201 atgagtgagagagaatgaaagagctctagtaaacaggctttagaaataacaataactatgcctcactgctttctttatagttcatctcactc 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  52807268 atgagtgagagagaatgaaagagctctagtaaacaggctttagaaataacaataactatgcctcactgctttctttatagttcttgtcactc 52807359  T

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