View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18629_high_17 (Length: 291)

Name: NF18629_high_17
Description: NF18629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18629_high_17
NF18629_high_17
[»] chr3 (6 HSPs)
chr3 (1-291)||(40566719-40567009)
chr3 (75-277)||(40600748-40600953)
chr3 (49-281)||(40577848-40578085)
chr3 (77-288)||(40571418-40571632)
chr3 (171-285)||(40596108-40596222)
chr3 (85-285)||(40589698-40589904)
[»] chr2 (1 HSPs)
chr2 (72-282)||(2016736-2016946)


Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 40567009 - 40566719
Alignment:
Q  1 taggaaggtttggaccaaacttggcaagtcaaacttgagcctcatggtgaacatggatcataacaagggagaagaaatatatagtaccttggcaaccatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  40567009 taggaaggtttggaccaaacttggcaagtcaaacttgagcctcatggtgaacacggatcataacaagggagaagatatatatagtaccttggcaaccatg 40566910  T
Q  101 aatgaggtaaggatttccccgatatccatgcacacatctacaaaggtagccagatctctcggctgaattgtaacatgtacttttgctggccttacatgca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40566909 aatgaggtaaggatttccccgatatccatgcacacatctacaaaggtagccagatctctcggctgaattgtaacatgtacttttgctggccttacatgca 40566810  T
Q  201 taattggaaagatcattctgagcatgctggcatgtttggttccctactgcccagtcgaacaacacaggaaactccttcttctttaactcaa 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40566809 taattggaaagatcattctgagcatgctggcatgtttggttccctactgcccagtcgaacaacacaggaaactccttcttctttaactcaa 40566719  T

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Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 75 - 277
Target Start/End: Complemental strand, 40600953 - 40600748
Alignment:
Q  75 aaatatatagtaccttggcaaccatgaatgaggtaaggatttccccgatatccatgcacacatctacaaaggtagccagatctctcggctga---attgt 171  Q
    ||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||    |||||||||||||| |||||||| || | ||    || ||    
T  40600953 aaatatataataccttggcaaccatgaacgagataaggatttccccgatatccatgagagcatctacaaaggtaaccagatctgtcagttgttgcatcgt 40600854  T
Q  172 aacatgtacttttgctggccttacatgcataattggaaagatcattctgagcatgctggcatgtttggttccctactgcccagtcgaacaacacaggaaa 271  Q
    ||||||||||||||  ||||||||| |||||| |||||||||| |||||||| || || || ||||||||||||||||||||||| ||||||||||||||    
T  40600853 aacatgtacttttgtcggccttacacgcataagtggaaagatccttctgagcttgatgacaagtttggttccctactgcccagtccaacaacacaggaaa 40600754  T
Q  272 ctcctt 277  Q
    ||||||    
T  40600753 ctcctt 40600748  T

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Target: chr3; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 49 - 281
Target Start/End: Complemental strand, 40578085 - 40577848
Alignment:
Q  49 gaacatggatcataacaagggagaagaaa--tatatagtaccttggcaaccatgaatgaggtaaggatttccccgatatccatgcacacatctacaaagg 146  Q
    ||||||| ||||||||||  ||||| |||  |||||| ||||||||||||||| ||||||||||||||||||||||||||||||    ||||| ||||||    
T  40578085 gaacatgaatcataacaaaagagaaaaaaaatatataataccttggcaaccattaatgaggtaaggatttccccgatatccatgagagcatctgcaaagg 40577986  T
Q  147 tagccagatctctcgg---ctgaattgtaacatgtacttttgctggccttacatgcataattggaaagatcattctgagcatgctggcatgtttggttcc 243  Q
    || |||||| | | ||   |||  | |||||||||||||||  |||||||||| |||||||||||| |||  |||||||| ||| |||||||||| || |    
T  40577985 taaccagatttgttggttcctgtttcgtaacatgtacttttaatggccttacaagcataattggaatgattcttctgagcttgcaggcatgtttgatttc 40577886  T
Q  244 ctactgcccagtcgaacaacacaggaaactccttcttc 281  Q
    |||||  |||||| ||||||||||||||||||||||||    
T  40577885 ctactttccagtccaacaacacaggaaactccttcttc 40577848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 77 - 288
Target Start/End: Complemental strand, 40571632 - 40571418
Alignment:
Q  77 atatatagtaccttggcaaccatgaatgaggtaaggatttccccgatatccatgcacacatctacaaaggtagccagatctctcgg---ctgaattgtaa 173  Q
    ||||||| |||||| |||||||| ||||||||||||||||||||||||||||   |  ||||| |||||||| |||||| | | ||   ||| || ||||    
T  40571632 atatataataccttcgcaaccattaatgaggtaaggatttccccgatatccaccaaagcatctgcaaaggtaaccagatttgttggttcctggatcgtaa 40571533  T
Q  174 catgtacttttgctggccttacatgcataattggaaagatcattctgagcatgctggcatgtttggttccctactgcccagtcgaacaacacaggaaact 273  Q
    |||||||||||   ||||||||||||||||||| ||||||  |||||||| ||| ||||||||||||| ||||||| |||||  ||||||||||||||||    
T  40571532 catgtacttttctcggccttacatgcataattgaaaagattcttctgagcttgcaggcatgtttggtttcctactgtccagttcaacaacacaggaaact 40571433  T
Q  274 ccttcttctttaact 288  Q
    |||| ||||| ||||    
T  40571432 ccttattcttcaact 40571418  T

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Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 171 - 285
Target Start/End: Complemental strand, 40596222 - 40596108
Alignment:
Q  171 taacatgtacttttgctggccttacatgcataattggaaagatcattctgagcatgctggcatgtttggttccctactgcccagtcgaacaacacaggaa 270  Q
    |||||| ||||||||   ||||||||||||||| |||||||||| ||| |||| |||||||| ||||||||||||||||||||||| |||||||||||||    
T  40596222 taacatttacttttgtctgccttacatgcataagtggaaagatccttccgagcttgctggcacgtttggttccctactgcccagtccaacaacacaggaa 40596123  T
Q  271 actccttcttcttta 285  Q
    | | | |||||||||    
T  40596122 agttcctcttcttta 40596108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 85 - 285
Target Start/End: Complemental strand, 40589904 - 40589698
Alignment:
Q  85 taccttggcaaccatgaatgaggtaaggatttccccgatatccatgcacacatctacaaaggtagccagatctctcgg---ctgaattgtaacatgtact 181  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||  |  ||| | |||||||| |||||| |   ||   ||| || ||||||| ||||    
T  40589904 taccttcgcaaccatgaatgaggtaaggatttcccctatatccatcaaagcatttgcaaaggtaaccagatttgatggtttctgcatcgtaacatatact 40589805  T
Q  182 tttgctggccttacatgcataattg---gaaagatcattctgagcatgctggcatgtttggttccctactgcccagtcgaacaacacaggaaactccttc 278  Q
    | ||   |||||||| ||||| ||    |||||||| |||||||| ||||| || |||||||| |||||||||||||| |||||||||||||| | ||||    
T  40589804 tctgtctgccttacaagcatacttacttgaaagatccttctgagcttgctgacaggtttggtttcctactgcccagtccaacaacacaggaaagttcttc 40589705  T
Q  279 ttcttta 285  Q
    |||||||    
T  40589704 ttcttta 40589698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 72 - 282
Target Start/End: Original strand, 2016736 - 2016946
Alignment:
Q  72 aagaaatatatagtaccttggcaaccatgaatgaggtaaggatttccccgatatccatgcacacatctacaaaggtagccagatctctcggctgaattgt 171  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||| ||||||||| |  ||||| |||||||| |||||| |||| | || |||||    
T  2016736 aagaaatatatgataccttggcaaccatgaatgaggtaaggatttcccctatatccatgaaggcatctgcaaaggtaaccagatttctcaggtggattgt 2016835  T
Q  172 aacatgtacttttgctggccttacatgcataattggaaagatcattctgagcatgctggcatgtttggttccctactgcccagtcgaacaacacaggaaa 271  Q
    |||||||||||||| || ||||||| |||||||| | |||||| |||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||    
T  2016836 aacatgtacttttgttgtccttacaggcataatttgcaagatccttctgagcttgctggcacgtttggttccctactgcccagtccaacaacacaggaaa 2016935  T
Q  272 ctccttcttct 282  Q
     ||||||||||    
T  2016936 ttccttcttct 2016946  T

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