View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18629_high_18 (Length: 262)
Name: NF18629_high_18
Description: NF18629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18629_high_18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 2379523 - 2379279
Alignment:
| Q |
1 |
taaaaatgcatataagagtgttaggataggaagctaagaccgtctacaattgagtccttcccctatttagggagaaaatgacgtgctcaatttatttatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
2379523 |
taaaaatgcatataagagtgttaggataggaagctaagatcgtctacaattgagtccttcccctatttagggaaaaaatgacgtgttcaatttatttatg |
2379424 |
T |
|
| Q |
101 |
aaaattagagatgtccatttataactactcgaaaatatatctgttctttttgcttttacatctctaagctatattatttctttaacatgttatggtatat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2379423 |
aaaattagagatgtccatttataactactcgaaaatatatctgttctttttgcttttatatctctaagctatattatttctttaacatgtcatggtatat |
2379324 |
T |
|
| Q |
201 |
gttgctgagagatatggttgaacccaacaaagagaagactaaaat |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2379323 |
gttgctgagagatatggttgaacccaacaaagagaagactaaaat |
2379279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 2 - 245
Target Start/End: Complemental strand, 2383628 - 2383386
Alignment:
| Q |
2 |
aaaaatgcatataagagtgttaggataggaagctaagaccgtctacaattgagtccttcccctatttagggagaaaatgacgtgctcaatttatttatga |
101 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||| ||| | || | ||||||||||||||||| ||||| | ||| | ||||| |||||| |
|
|
| T |
2383628 |
aaaaatgcatacaagagtgttaggataggaaactaagaccatcttccatggggtccttcccctatttagatcaaaaataatgtgttgaatttgtttatgg |
2383529 |
T |
|
| Q |
102 |
aaattagagatgtccatttataactactcgaaaatatatctgttctttttgcttttacatctctaagctatattatttctttaacatgttatggtatatg |
201 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||| |
|
|
| T |
2383528 |
aaat-agagatgtccatttataactactcgaaaatatatttgttctttttgcttttacatctctaagctataatatttctttaacacatcatggtatatg |
2383430 |
T |
|
| Q |
202 |
ttgctgagagatatggttgaacccaacaaagagaagactaaaat |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2383429 |
ttgctgagagatatggttgaacccaacaaagagaagaataaaat |
2383386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University