View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18629_high_26 (Length: 230)
Name: NF18629_high_26
Description: NF18629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18629_high_26 |
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| [»] scaffold0531 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 216
Target Start/End: Original strand, 43854446 - 43854643
Alignment:
| Q |
19 |
gatgttgcatttgcctatgctggacacaatgtggtgttggagattcaagcaacaatcccttccacaccagagaaaccatccaagggtccaatgtggagag |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43854446 |
gatgttgcatttgcctatgctggacacaatgtggtgttggagattcaagcaacaatcccttccacaccagagaaaccatccaagggtccaatgtggagag |
43854545 |
T |
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| Q |
119 |
gagttttattagcatatattgtcgtagctttgtgttatttccctgttgctcttattggatattggatgtttggcaattcagttgctgataatattctt |
216 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43854546 |
gagttttattagcatatattgttgtagctttgtgttatttccctgttgctcttattggatattggatgtttggcaattcagttgctgataatattctt |
43854643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 21 - 195
Target Start/End: Complemental strand, 41381760 - 41381586
Alignment:
| Q |
21 |
tgttgcatttgcctatgctggacacaatgtggtgttggagattcaagcaacaatcccttccacaccagagaaaccatccaagggtccaatgtggagagga |
120 |
Q |
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| T |
41381760 |
tgttgcttttgcctatgcaggacacaatgtggtgttggaaattcaatctacaatcccatctacacctgagaaaccatctaagggtccaatgtggaaagga |
41381661 |
T |
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| Q |
121 |
gttttattagcatatattgtcgtagctttgtgttatttccctgttgctcttattggatattggatgtttggcaat |
195 |
Q |
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| T |
41381660 |
gttatctttgcctacatggttgttgctttgtgctactttcctgttgctattatcggttattatgtgtttggcaat |
41381586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 23 - 191
Target Start/End: Complemental strand, 7978254 - 7978086
Alignment:
| Q |
23 |
ttgcatttgcctatgctggacacaatgtggtgttggagattcaagcaacaatcccttccacaccagagaaaccatccaagggtccaatgtggagaggagt |
122 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||| ||||||||||| || || ||||| |||||||||||||||| |||||||||||||||||| |
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| T |
7978254 |
ttgcttttgcctatgctggacacaatgtggtgttagagatccaagcaacaattccgtcgacaccggagaaaccatccaaggttccaatgtggagaggagt |
7978155 |
T |
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| Q |
123 |
tttattagcatatattgtcgtagctttgtgttatttccctgttgctcttattggatattggatgtttgg |
191 |
Q |
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| T |
7978154 |
tgttgttgcatacattgttgttgctttgtgttacttccctgttgctcttattggttactggatatttgg |
7978086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 21 - 195
Target Start/End: Complemental strand, 7971323 - 7971149
Alignment:
| Q |
21 |
tgttgcatttgcctatgctggacacaatgtggtgttggagattcaagcaacaatcccttccacaccagagaaaccatccaagggtccaatgtggagagga |
120 |
Q |
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|||||||||||||| ||| |||||||| |||||| ||||||| ||||||||||| || || ||||| ||||||||||| |||||||||||||||| |||| |
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| T |
7971323 |
tgttgcatttgcctttgccggacacaacgtggtgctggagatccaagcaacaattccgtctacacctgagaaaccatctaagggtccaatgtggaaagga |
7971224 |
T |
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| Q |
121 |
gttttattagcatatattgtcgtagctttgtgttatttccctgttgctcttattggatattggatgtttggcaat |
195 |
Q |
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| T |
7971223 |
gttattgttgcatacattgttgttgctttgtgctactttcctgttgctcttatcggttattggatatttggcaat |
7971149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 191
Target Start/End: Original strand, 8032486 - 8032656
Alignment:
| Q |
21 |
tgttgcatttgcctatgctggacacaatgtggtgttggagattcaagcaacaatcccttccacaccagagaaaccatccaagggtccaatgtggagagga |
120 |
Q |
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|||||||||||||||||||||||| ||||||||| | ||||| ||||||||||| || || ||||| ||||||||||| |||||||||||||||||||| |
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| T |
8032486 |
tgttgcatttgcctatgctggacataatgtggtgctcgagatccaagcaacaattccatctacacctgagaaaccatctaagggtccaatgtggagaggt |
8032585 |
T |
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| Q |
121 |
gttttattagcatatattgtcgtagctttgtgttatttccctgttgctcttattggatattggatgtttgg |
191 |
Q |
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||| | | || || ||||| || |||||||| || || ||||||||| ||||||| |||||| ||||||| |
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| T |
8032586 |
gttgttgttgcctacattgttgttgctttgtgctactttcctgttgctattattggttattgggtgtttgg |
8032656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 195
Target Start/End: Original strand, 8042390 - 8042564
Alignment:
| Q |
21 |
tgttgcatttgcctatgctggacacaatgtggtgttggagattcaagcaacaatcccttccacaccagagaaaccatccaagggtccaatgtggagagga |
120 |
Q |
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| T |
8042390 |
tgttgcatttgcctttgctggacacattgtggtgctggagatccaagcaacaattccgtctacaccggagaaaccatctaagggtccaatgtggaaagga |
8042489 |
T |
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| Q |
121 |
gttttattagcatatattgtcgtagctttgtgttatttccctgttgctcttattggatattggatgtttggcaat |
195 |
Q |
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||| | | || || ||| | || |||||||| || |||||||||||| |||| || |||||||| ||||||||| |
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| T |
8042490 |
gttgttgttgcctacattattgttgctttgtgctacttccctgttgctattatcggttattggatatttggcaat |
8042564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 195
Target Start/End: Complemental strand, 2614 - 2447
Alignment:
| Q |
28 |
tttgcctatgctggacacaatgtggtgttggagattcaagcaacaatcccttccacaccagagaaaccatccaagggtccaatgtggagaggagttttat |
127 |
Q |
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| T |
2614 |
tttgcctatgccggacacaatgtggtactggagatccaagcaacaattccgtctacacctgagaaaccatctaagggtccaatgtggagaggtgttgttg |
2515 |
T |
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| Q |
128 |
tagcatatattgtcgtagctttgtgttatttccctgttgctcttattggatattggatgtttggcaat |
195 |
Q |
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| || || ||||| || ||| |||| || || ||||||||| | ||||| |||||||||||||||||| |
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| T |
2514 |
ttgcctacattgttgttgctgtgtgctactttcctgttgctataattggttattggatgtttggcaat |
2447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 14198210 - 14198037
Alignment:
| Q |
18 |
agatgttgcatttgcctatgctggacacaatgtggtgttggagattcaagcaacaatcccttccacaccagagaaaccatccaagggtccaatgtggaga |
117 |
Q |
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|||||| || ||||| ||||| |||||||| |||||||| || || ||||||||||| || || ||||| || |||||||| |||||||||||||||||| |
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| T |
14198210 |
agatgtggcttttgcttatgccggacacaacgtggtgttagaaatccaagcaacaattccatctacaccggaaaaaccatctaagggtccaatgtggaga |
14198111 |
T |
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| Q |
118 |
ggagttttattagcatatattgtcgtagctttgtgttatttccctgttgctcttattggatattggatgtttgg |
191 |
Q |
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| T |
14198110 |
ggagtgattgtagcctatatagttgtagctttgtgctactttccagttgctctcattggttattggatgtttgg |
14198037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 42985643 - 42985583
Alignment:
| Q |
23 |
ttgcatttgcctatgctggacacaatgtggtgttggagattcaagcaacaatcccttccac |
83 |
Q |
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||||||||| |||||||| ||||||||| | |||||||||||| |||||||||||||||| |
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| T |
42985643 |
ttgcatttggttatgctggccacaatgtgattttggagattcaatcaacaatcccttccac |
42985583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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